Wall clock time and date at job start Fri Apr 10 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42893 * 109.46973 * 2 1 4 4 C 1.42896 * 113.99901 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47276 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.47378 * 179.42840 * 5 4 3 7 7 C 1.50696 * 110.53701 * 298.52854 * 6 5 4 8 8 O 1.21273 * 120.00351 * 113.00812 * 7 6 5 9 9 N 1.34779 * 119.99652 * 293.00188 * 7 6 5 10 10 C 1.46503 * 119.99972 * 185.01783 * 9 7 6 11 11 C 1.50698 * 109.47388 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99827 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.37103 * 120.00210 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99488 * 0.02562 * 14 13 11 16 16 C 1.38946 * 120.00235 * 180.02562 * 14 13 11 17 17 N 1.31414 * 119.99654 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00107 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47136 * 90.00446 * 18 16 14 20 20 H 1.48497 * 109.47167 * 210.00354 * 18 16 14 21 21 H 1.48505 * 109.47419 * 330.00420 * 18 16 14 22 22 C 1.54887 * 110.48494 * 61.13715 * 6 5 4 23 23 C 1.54888 * 102.74823 * 156.62088 * 22 6 5 24 24 C 1.54267 * 104.19590 * 322.05685 * 23 22 6 25 25 C 1.53876 * 106.59518 * 23.61171 * 24 23 22 26 26 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.46873 * 299.99635 * 1 2 3 28 28 H 1.08996 * 109.46677 * 59.99804 * 1 2 3 29 29 H 1.09004 * 109.46776 * 240.00132 * 2 1 3 30 30 H 1.08996 * 109.46677 * 120.00196 * 2 1 3 31 31 H 1.09004 * 109.47062 * 60.00334 * 4 3 2 32 32 H 1.08998 * 109.47240 * 300.00150 * 4 3 2 33 33 H 1.09009 * 109.47085 * 59.43197 * 5 4 3 34 34 H 1.09002 * 109.47344 * 299.43008 * 5 4 3 35 35 H 0.96999 * 120.00690 * 5.01945 * 9 7 6 36 36 H 1.09006 * 109.47417 * 300.00481 * 10 9 7 37 37 H 1.09002 * 109.47284 * 60.00072 * 10 9 7 38 38 H 0.96998 * 120.00374 * 0.02562 * 13 11 10 39 39 H 0.97002 * 119.99917 * 180.02562 * 17 16 14 40 40 H 1.08999 * 110.75743 * 274.94045 * 22 6 5 41 41 H 1.09006 * 110.75435 * 38.30258 * 22 6 5 42 42 H 1.09003 * 110.48307 * 203.37642 * 23 22 6 43 43 H 1.09002 * 110.48387 * 80.73853 * 23 22 6 44 44 H 1.08998 * 110.03294 * 264.32799 * 24 23 22 45 45 H 1.08994 * 110.02773 * 142.89555 * 24 23 22 46 46 H 1.09003 * 110.02965 * 240.71239 * 25 24 23 47 47 H 1.09005 * 110.03183 * 119.28810 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3506 3.0592 0.0162 7 6 5.9184 2.4319 1.2632 8 8 6.5976 1.4304 1.1830 9 7 5.6714 2.9840 2.4677 10 6 6.3119 2.4403 3.6679 11 6 5.8718 3.2299 4.8737 12 8 5.0989 4.1555 4.7433 13 7 6.3363 2.9070 6.0969 14 6 5.9356 3.6250 7.1940 15 1 5.2473 4.4492 7.0779 16 6 6.4149 3.2924 8.4550 17 7 6.0303 3.9804 9.5066 18 14 7.6047 1.8665 8.6558 19 1 8.9985 2.3633 8.5299 20 1 7.4178 1.2505 9.9940 21 1 7.3438 0.8520 7.6031 22 6 5.9590 2.4009 -1.2470 23 6 7.3268 3.1155 -1.3797 24 6 7.0325 4.5743 -0.9734 25 6 5.7760 4.5384 -0.0859 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8340 0.9764 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 3.4138 3.4239 0.8861 34 1 3.4316 3.4199 -0.8939 35 1 5.0697 3.7413 2.5400 36 1 6.0234 1.3965 3.7925 37 1 7.3948 2.5080 3.5643 38 1 6.9542 2.1665 6.2012 39 1 6.3652 3.7484 10.3869 40 1 6.0955 1.3300 -1.0968 41 1 5.3363 2.5932 -2.1207 42 1 7.6824 3.0704 -2.4091 43 1 8.0566 2.6708 -0.7031 44 1 6.8455 5.1786 -1.8611 45 1 7.8737 4.9828 -0.4135 46 1 4.9793 5.1254 -0.5429 47 1 6.0074 4.9297 0.9048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344187078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:31 Heat of formation + Delta-G solvation = -164.678947 kcal Electronic energy + Delta-G solvation = -26741.789346 eV Core-core repulsion = 22922.761310 eV Total energy + Delta-G solvation = -3819.028036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79073 -40.37994 -39.03441 -38.13252 -36.32451 -35.40237 -33.93507 -33.82750 -31.82335 -30.06386 -29.25584 -27.92189 -26.29172 -23.75207 -23.64438 -23.27005 -21.53274 -21.27387 -20.76512 -20.10117 -18.09488 -17.76748 -17.53491 -17.22199 -17.01765 -16.75613 -16.66177 -16.09525 -15.78354 -15.43444 -15.26773 -15.15928 -14.93868 -14.51651 -14.34334 -14.09679 -14.02705 -13.64967 -13.34042 -13.21748 -13.02805 -12.97829 -12.47264 -12.46021 -12.25081 -12.14685 -12.06693 -12.02609 -11.90179 -11.76279 -11.60643 -11.54853 -11.31615 -10.78184 -10.67717 -10.58988 -10.35855 -10.18736 -8.47646 -6.09794 1.28698 1.31559 1.41595 1.55082 1.76780 1.99067 2.18302 2.60513 2.83741 3.08326 3.42251 3.56982 3.69437 3.93994 4.03212 4.06105 4.12551 4.14568 4.30628 4.35482 4.35775 4.38003 4.41745 4.45764 4.51558 4.56269 4.65863 4.79490 4.84739 4.93501 4.99332 5.03320 5.05382 5.08921 5.14390 5.22010 5.25021 5.29253 5.36262 5.46588 5.50975 5.85809 6.20457 6.44998 6.48021 6.75758 7.12076 7.27042 7.75164 8.68845 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.003463 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.575908 B = 8083.442584 C = 9502.860416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.063 3.937 5 C -0.098 4.098 6 C -0.074 4.074 7 C 0.527 3.473 8 O -0.570 6.570 9 N -0.712 5.712 10 C 0.117 3.883 11 C 0.444 3.556 12 O -0.613 6.613 13 N -0.578 5.578 14 C -0.332 4.332 15 H 0.063 0.937 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.958 3.042 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.235 1.235 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.411 0.589 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.391 0.609 39 H 0.282 0.718 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 -7.336 -24.671 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.326 6.326 4 C -0.013 4.013 5 C -0.136 4.136 6 C -0.077 4.077 7 C 0.315 3.685 8 O -0.450 6.450 9 N -0.365 5.365 10 C -0.011 4.011 11 C 0.232 3.768 12 O -0.499 6.499 13 N -0.217 5.217 14 C -0.461 4.461 15 H 0.081 0.919 16 C -0.207 4.207 17 N -0.565 5.565 18 Si 0.778 3.222 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.158 1.158 22 C -0.137 4.137 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.154 4.154 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.249 0.751 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.227 0.773 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.118 0.882 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.251 -7.213 -24.547 25.616 hybrid contribution 0.485 -0.429 1.352 1.499 sum -0.766 -7.642 -23.195 24.433 Atomic orbital electron populations 1.21758 0.92565 1.03424 1.02785 1.22660 0.96607 0.83019 1.00545 1.87829 1.21402 1.27877 1.95530 1.22527 0.80934 0.97722 1.00149 1.21530 0.91769 0.95331 1.04974 1.21610 0.95423 0.97950 0.92708 1.20888 0.79521 0.83351 0.84735 1.90639 1.41025 1.26048 1.87239 1.45792 1.48742 1.36362 1.05650 1.20879 0.99396 0.97821 0.82988 1.20486 0.84560 0.86886 0.84877 1.90529 1.39708 1.33826 1.85788 1.41930 1.42851 1.31023 1.05941 1.19034 1.27585 1.13948 0.85548 0.91851 1.26056 0.99587 1.01183 0.93875 1.69780 1.44949 1.41782 0.99939 0.85452 0.78745 0.78242 0.79723 1.17986 1.19717 1.15798 1.22508 0.96506 0.99707 0.95011 1.22350 0.96872 0.95050 1.01919 1.22151 0.96719 0.97166 0.99931 1.22333 0.99548 0.92524 1.00972 0.89154 0.92831 0.91515 0.91963 0.94016 0.91472 0.95664 0.91486 0.87355 0.75066 0.88290 0.87797 0.77282 0.90876 0.91538 0.88062 0.89555 0.93604 0.89275 0.92480 0.88151 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.99 0.74 -1.58 16 2 C 0.05 0.92 6.66 71.99 0.48 1.40 16 3 O -0.41 -9.78 10.34 -148.98 -1.54 -11.32 16 4 C 0.06 1.42 5.51 71.98 0.40 1.81 16 5 C -0.10 -1.97 4.53 30.60 0.14 -1.83 16 6 C -0.07 -1.54 0.47 -51.85 -0.02 -1.57 16 7 C 0.53 15.08 5.15 87.66 0.45 15.54 16 8 O -0.57 -19.04 15.49 -3.01 -0.05 -19.09 16 9 N -0.71 -22.28 5.09 -466.78 -2.38 -24.66 16 10 C 0.12 3.92 6.16 85.63 0.53 4.44 16 11 C 0.44 19.63 7.85 87.66 0.69 20.31 16 12 O -0.61 -31.89 15.24 -3.05 -0.05 -31.94 16 13 N -0.58 -26.81 5.09 -307.00 -1.56 -28.37 16 14 C -0.33 -18.97 10.16 84.04 0.85 -18.12 16 15 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 16 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 17 N -0.92 -54.45 13.96 21.66 0.30 -54.15 16 18 Si 0.96 38.25 27.74 68.60 1.90 40.15 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.23 -8.04 6.52 99.48 0.65 -7.40 16 22 C -0.10 -1.79 4.49 31.88 0.14 -1.64 16 23 C -0.12 -2.19 6.56 31.67 0.21 -1.98 16 24 C -0.12 -1.99 6.80 31.32 0.21 -1.78 16 25 C -0.12 -2.13 5.85 31.32 0.18 -1.95 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.29 7.22 -2.38 -0.02 1.27 16 32 H 0.03 0.68 7.30 -2.39 -0.02 0.66 16 33 H 0.07 1.53 8.00 -2.38 -0.02 1.51 16 34 H 0.11 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.41 13.27 6.83 -92.71 -0.63 12.64 16 36 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 39 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.07 1.42 7.16 -2.39 -0.02 1.40 16 41 H 0.10 1.30 8.06 -2.38 -0.02 1.28 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.03 8.01 -2.39 -0.02 1.01 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.10 1.41 7.81 -2.39 -0.02 1.39 16 47 H 0.06 1.27 7.11 -2.38 -0.02 1.25 16 Total: -1.00 -73.05 378.15 1.84 -71.20 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: -0.26 Total: 45.02 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.47 Total: 13.15 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -3.64 Total: -107.18 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -1.63 Total: -62.35 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.90 Total: 40.15 kcal Total: -73.05 1.84 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344187078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.474 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds