Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99901 * 2 1 4 4 O 1.20825 * 120.00428 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99881 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47064 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.47405 * 304.99947 * 6 5 3 8 8 C 1.52994 * 109.47368 * 65.00431 * 6 5 3 9 9 C 1.50706 * 109.47153 * 185.00408 * 6 5 3 10 10 O 1.21279 * 119.99870 * 359.97438 * 9 6 5 11 11 N 1.34773 * 119.99984 * 180.02562 * 9 6 5 12 12 C 1.46504 * 119.99966 * 179.97438 * 11 9 6 13 13 C 1.52994 * 109.47135 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.50142 * 304.99680 * 13 12 11 15 15 C 1.53045 * 109.49716 * 184.93675 * 13 12 11 16 16 C 1.53039 * 109.54031 * 178.68352 * 15 13 12 17 17 C 1.53197 * 109.31234 * 61.36052 * 16 15 13 18 18 N 1.46924 * 108.77501 * 305.36694 * 17 16 15 19 19 C 1.36935 * 120.63358 * 233.60325 * 18 17 16 20 20 H 1.07995 * 120.00394 * 152.79149 * 19 18 17 21 21 C 1.38818 * 119.99886 * 332.80366 * 19 18 17 22 22 N 1.31620 * 120.00181 * 159.74826 * 21 19 18 23 23 Si 1.86802 * 119.99876 * 339.74586 * 21 19 18 24 24 H 1.48504 * 109.46974 * 94.89723 * 23 21 19 25 25 H 1.48495 * 109.47245 * 214.89848 * 23 21 19 26 26 H 1.48505 * 109.47135 * 334.90128 * 23 21 19 27 27 C 1.46934 * 118.76521 * 53.58915 * 18 17 16 28 28 H 1.08997 * 109.47194 * 59.99605 * 1 2 3 29 29 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47363 * 299.99977 * 1 2 3 31 31 H 1.09001 * 109.46710 * 59.99812 * 5 3 2 32 32 H 1.08996 * 109.47239 * 300.00088 * 5 3 2 33 33 H 1.09005 * 109.47025 * 300.00018 * 8 6 5 34 34 H 1.08996 * 109.47628 * 180.02562 * 8 6 5 35 35 H 1.08998 * 109.47607 * 59.99707 * 8 6 5 36 36 H 0.97002 * 120.00317 * 359.97438 * 11 9 6 37 37 H 1.08995 * 109.46807 * 300.00058 * 12 11 9 38 38 H 1.09007 * 109.46861 * 59.99526 * 12 11 9 39 39 H 1.08998 * 109.45610 * 298.70349 * 15 13 12 40 40 H 1.09002 * 109.45856 * 58.67670 * 15 13 12 41 41 H 1.08992 * 109.50014 * 181.31568 * 16 15 13 42 42 H 1.09008 * 109.49825 * 301.41288 * 16 15 13 43 43 H 1.08997 * 109.58126 * 65.15763 * 17 16 15 44 44 H 1.08996 * 109.58673 * 185.57569 * 17 16 15 45 45 H 0.97002 * 119.99881 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.61619 * 186.63515 * 27 18 17 47 47 H 1.09005 * 109.56387 * 66.21134 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7420 0.0011 7 1 3.5382 3.2578 -0.8408 8 6 3.5597 3.4036 1.3084 9 6 5.4999 2.8225 -0.1223 10 8 6.1572 1.8064 -0.2022 11 7 6.1109 4.0236 -0.1427 12 6 7.5690 4.1018 -0.2620 13 6 8.0028 5.5689 -0.2616 14 1 7.4732 6.1052 -1.0491 15 6 9.5105 5.6559 -0.5095 16 6 9.9401 7.1244 -0.5420 17 6 9.6345 7.7717 0.8125 18 7 8.2140 7.5653 1.1256 19 6 7.4072 8.6264 1.4392 20 1 6.3466 8.5750 1.2426 21 6 7.9528 9.7683 2.0096 22 7 7.3006 10.9100 1.9496 23 14 9.6127 9.6846 2.8625 24 1 10.6801 10.0781 1.9080 25 1 9.6202 10.6110 4.0230 26 1 9.8574 8.2979 3.3344 27 6 7.6747 6.1988 1.0956 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 3.9563 0.7805 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 2.4749 3.3455 1.3976 34 1 3.8683 4.4490 1.3086 35 1 4.0216 2.8879 2.1503 36 1 5.5853 4.8363 -0.0784 37 1 8.0306 3.5858 0.5798 38 1 7.8831 3.6306 -1.1935 39 1 10.0404 5.1402 0.2913 40 1 9.7492 5.1868 -1.4640 41 1 11.0097 7.1863 -0.7418 42 1 9.3922 7.6465 -1.3265 43 1 10.2498 7.3104 1.5849 44 1 9.8464 8.8398 0.7631 45 1 7.6817 11.7078 2.3486 46 1 6.5937 6.2290 1.2328 47 1 8.1297 5.6093 1.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345045255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -137.772023 kcal Electronic energy + Delta-G solvation = -26447.908679 eV Core-core repulsion = 22630.047415 eV Total energy + Delta-G solvation = -3817.861264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.75541 -40.84908 -39.57273 -37.73180 -36.35160 -35.34366 -34.65963 -32.80857 -32.11431 -30.02744 -27.88426 -27.47105 -26.97504 -24.84936 -23.66033 -22.90267 -21.95443 -21.12893 -20.42781 -19.05481 -18.70995 -17.98365 -17.56024 -17.32164 -17.04478 -16.90341 -16.60744 -16.03862 -15.55362 -15.16845 -15.03635 -15.00095 -14.77992 -14.38969 -14.21785 -14.06042 -13.90349 -13.86553 -13.48465 -13.26964 -13.16668 -13.00170 -12.94715 -12.54682 -12.28476 -12.19987 -12.13352 -12.07391 -11.77280 -11.68244 -11.55646 -11.49203 -11.32767 -11.24980 -10.76640 -10.66205 -10.04377 -8.91662 -8.15792 -5.46844 1.14403 1.29572 1.41172 1.49553 1.59739 1.64747 2.34122 2.41924 3.06391 3.32860 3.42822 3.79329 3.87733 3.88546 3.98093 3.99698 4.05154 4.26279 4.31474 4.32928 4.34674 4.41553 4.55630 4.59809 4.64888 4.67181 4.72557 4.80922 4.83149 4.85310 4.87326 4.99818 5.00964 5.09675 5.17127 5.22246 5.27786 5.31017 5.43690 5.47735 5.59854 5.87457 6.13569 6.51688 6.70402 6.92945 7.19614 7.63874 8.04539 9.03888 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.002726 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.726672 B =10269.711063 C =11260.843694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.467 3.533 4 O -0.528 6.528 5 C -0.092 4.092 6 C -0.093 4.093 7 H 0.114 0.886 8 C -0.150 4.150 9 C 0.523 3.477 10 O -0.575 6.575 11 N -0.719 5.719 12 C 0.137 3.863 13 C -0.105 4.105 14 H 0.072 0.928 15 C -0.098 4.098 16 C -0.128 4.128 17 C 0.115 3.885 18 N -0.620 5.620 19 C -0.244 4.244 20 H 0.057 0.943 21 C -0.037 4.037 22 N -0.958 5.958 23 Si 0.945 3.055 24 H -0.278 1.278 25 H -0.314 1.314 26 H -0.261 1.261 27 C 0.152 3.848 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.410 0.590 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.260 0.740 46 H 0.058 0.942 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 -22.541 -6.114 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.311 3.689 4 O -0.418 6.418 5 C -0.129 4.129 6 C -0.114 4.114 7 H 0.132 0.868 8 C -0.207 4.207 9 C 0.310 3.690 10 O -0.455 6.455 11 N -0.370 5.370 12 C 0.013 3.987 13 C -0.125 4.125 14 H 0.090 0.910 15 C -0.136 4.136 16 C -0.167 4.167 17 C -0.009 4.009 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.074 0.926 21 C -0.232 4.232 22 N -0.604 5.604 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.244 1.244 26 H -0.185 1.185 27 C 0.027 3.973 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.139 -22.826 -6.120 24.416 hybrid contribution 0.064 1.299 0.699 1.476 sum -6.075 -21.527 -5.421 23.015 Atomic orbital electron populations 1.23542 0.74768 1.05634 1.02578 1.86505 1.25012 1.32922 1.83723 1.23886 0.92393 0.81219 0.71381 1.90658 1.67891 1.36858 1.46389 1.21147 0.86395 0.97375 1.08029 1.21029 0.91035 0.96726 1.02656 0.86821 1.21906 1.03167 1.01014 0.94645 1.20645 0.90298 0.83000 0.75058 1.90683 1.67748 1.35553 1.51523 1.46065 1.08545 1.08740 1.73676 1.21307 0.79554 0.95717 1.02169 1.21745 0.97898 0.94120 0.98779 0.90951 1.21363 0.93844 0.95678 1.02720 1.21913 1.01290 0.96640 0.96811 1.21437 0.84879 0.98481 0.96134 1.44487 1.06415 1.03159 1.80403 1.18888 0.92087 0.93080 1.33265 0.92562 1.25882 1.01408 0.95462 1.00429 1.69960 1.41953 0.99659 1.48847 0.85931 0.81225 0.77396 0.77971 1.20454 1.24373 1.18518 1.21109 0.97642 0.83742 0.94778 0.91891 0.85250 0.91946 0.86004 0.86194 0.90503 0.91400 0.91978 0.75398 0.91710 0.90704 0.91455 0.89740 0.90026 0.92733 0.95107 0.93750 0.93086 0.92397 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.37 -6.11 10.57 -51.42 -0.54 -6.65 16 3 C 0.47 8.77 7.68 71.24 0.55 9.32 16 4 O -0.53 -12.37 13.72 21.97 0.30 -12.07 16 5 C -0.09 -1.54 4.63 29.85 0.14 -1.40 16 6 C -0.09 -1.73 2.37 -11.54 -0.03 -1.76 16 7 H 0.11 2.00 7.96 -2.39 -0.02 1.98 16 8 C -0.15 -2.84 8.83 71.98 0.64 -2.21 16 9 C 0.52 11.95 7.15 87.66 0.63 12.57 16 10 O -0.57 -16.36 15.92 -3.03 -0.05 -16.41 16 11 N -0.72 -15.97 5.22 -463.06 -2.42 -18.38 16 12 C 0.14 3.17 5.07 86.38 0.44 3.61 16 13 C -0.11 -2.84 2.37 -10.72 -0.03 -2.87 16 14 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.10 -2.47 5.17 30.62 0.16 -2.31 16 16 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 17 C 0.12 4.70 4.19 86.36 0.36 5.06 16 18 N -0.62 -27.87 2.77 -699.09 -1.94 -29.81 16 19 C -0.24 -13.42 10.04 84.04 0.84 -12.58 16 20 H 0.06 3.35 8.05 -2.91 -0.02 3.33 16 21 C -0.04 -2.16 5.24 84.86 0.44 -1.71 16 22 N -0.96 -59.84 13.97 21.65 0.30 -59.53 16 23 Si 0.95 46.45 24.35 68.60 1.67 48.12 16 24 H -0.28 -12.95 6.70 99.48 0.67 -12.29 16 25 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16 26 H -0.26 -12.23 6.45 99.48 0.64 -11.59 16 27 C 0.15 5.34 5.60 86.36 0.48 5.82 16 28 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 29 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 8.13 -2.38 -0.02 0.71 16 31 H 0.12 1.89 7.96 -2.39 -0.02 1.87 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.58 5.96 -2.38 -0.01 1.57 16 34 H 0.07 1.29 7.56 -2.39 -0.02 1.27 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 8.54 7.12 -92.71 -0.66 7.88 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.03 1.23 6.98 -2.39 -0.02 1.21 16 44 H 0.04 2.04 4.49 -2.39 -0.01 2.02 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.06 2.02 7.13 -2.39 -0.02 2.00 16 47 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -71.67 369.12 3.53 -68.14 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.19 Total: 17.29 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 6.01 Total: 9.30 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.06 Total: -107.72 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.29 Total: -35.13 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.12 kcal Total: -71.67 3.53 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345045255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.627 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds