Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99782 * 2 1 4 4 O 1.20825 * 120.00036 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99995 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.27110 * 302.09329 * 5 3 2 7 7 C 1.54589 * 110.39258 * 64.23492 * 5 3 2 8 8 C 1.54940 * 102.92284 * 140.91840 * 7 5 3 9 9 N 1.48536 * 103.22415 * 322.58699 * 8 7 5 10 10 C 1.46896 * 110.99875 * 159.71904 * 9 8 7 11 11 C 1.53000 * 109.47074 * 52.60470 * 10 9 8 12 12 C 1.50706 * 109.47492 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99660 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00094 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00308 * 359.97438 * 14 12 11 16 16 C 1.46506 * 119.99594 * 179.97438 * 14 12 11 17 17 C 1.50699 * 109.46928 * 90.00049 * 16 14 12 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47174 * 120.00320 * 21 19 17 24 24 H 1.48497 * 109.47378 * 240.00235 * 21 19 17 25 25 C 1.47898 * 105.82097 * 39.20667 * 9 8 7 26 26 H 1.08999 * 109.92123 * 215.12052 * 25 9 8 27 27 C 1.52999 * 109.92061 * 94.02100 * 25 9 8 28 28 H 1.08995 * 109.47201 * 60.00003 * 1 2 3 29 29 H 1.09008 * 109.46690 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46907 * 299.99550 * 1 2 3 31 31 H 1.08999 * 110.72846 * 259.27819 * 7 5 3 32 32 H 1.09006 * 110.72349 * 22.38312 * 7 5 3 33 33 H 1.09003 * 110.66611 * 204.15472 * 8 7 5 34 34 H 1.08993 * 110.66814 * 81.02118 * 8 7 5 35 35 H 1.08996 * 109.47595 * 292.60632 * 10 9 8 36 36 H 1.09000 * 109.46993 * 172.60157 * 10 9 8 37 37 H 1.08997 * 109.47467 * 59.99946 * 11 10 9 38 38 H 1.09004 * 109.47390 * 299.99872 * 11 10 9 39 39 H 1.08999 * 109.46532 * 269.99942 * 15 14 12 40 40 H 1.09000 * 109.46877 * 29.99967 * 15 14 12 41 41 H 1.09000 * 109.47251 * 150.00072 * 15 14 12 42 42 H 1.09004 * 109.47073 * 209.99877 * 16 14 12 43 43 H 1.09000 * 109.47212 * 329.99960 * 16 14 12 44 44 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47110 * 61.44911 * 27 25 9 46 46 H 1.08994 * 109.47689 * 181.45061 * 27 25 9 47 47 H 1.09005 * 109.47112 * 301.45674 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9716 0.7523 0.8671 7 6 4.1378 0.6739 -1.3040 8 6 5.3089 1.6302 -1.6422 9 7 4.7834 2.9630 -1.2500 10 6 5.8782 3.9199 -1.0415 11 6 6.7861 3.9325 -2.2729 12 6 7.9097 4.9138 -2.0587 13 8 7.9773 5.5417 -1.0233 14 7 8.8387 5.0944 -3.0182 15 6 8.7568 4.3363 -4.2692 16 6 9.9306 6.0488 -2.8102 17 6 11.0970 5.3449 -2.1660 18 1 11.0317 4.2919 -1.9350 19 6 12.2480 6.0450 -1.8724 20 7 12.3277 7.3271 -2.1540 21 14 13.6936 5.1726 -1.0732 22 1 13.3529 3.7430 -0.8604 23 1 14.8821 5.2714 -1.9580 24 1 13.9953 5.8099 0.2338 25 6 4.0245 2.7451 0.0005 26 1 3.1588 3.4068 0.0297 27 6 4.9241 3.0107 1.2093 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.5034 -0.3389 -1.1344 32 1 3.3873 0.6841 -2.0945 33 1 5.5319 1.6032 -2.7089 34 1 6.1930 1.3778 -1.0568 35 1 6.4571 3.6248 -0.1663 36 1 5.4649 4.9163 -0.8846 37 1 6.2074 4.2277 -3.1481 38 1 7.1995 2.9361 -2.4298 39 1 9.3094 3.4026 -4.1650 40 1 7.7128 4.1177 -4.4938 41 1 9.1872 4.9248 -5.0795 42 1 10.2405 6.4613 -3.7704 43 1 9.5895 6.8553 -2.1612 44 1 13.1373 7.8197 -1.9471 45 1 5.2578 4.0482 1.1928 46 1 4.3655 2.8232 2.1262 47 1 5.7901 2.3499 1.1698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346993937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = -135.397758 kcal Electronic energy + Delta-G solvation = -26522.553658 eV Core-core repulsion = 22704.795350 eV Total energy + Delta-G solvation = -3817.758308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.95064 -40.82153 -39.91454 -37.52155 -36.60221 -34.86536 -34.48938 -32.36772 -31.12045 -29.57030 -28.61064 -27.27081 -27.08418 -25.61020 -23.94302 -23.37699 -21.53689 -20.41516 -19.80993 -18.82080 -18.71207 -18.08571 -17.78917 -17.42558 -17.14241 -16.78263 -16.42724 -16.25951 -15.73996 -15.23179 -15.02269 -14.53133 -14.32520 -14.20043 -14.08655 -13.90236 -13.74444 -13.48494 -13.40655 -13.18424 -13.15323 -12.98321 -12.80029 -12.64444 -12.56832 -12.41238 -12.25835 -12.20129 -12.03542 -11.85284 -11.81260 -11.70499 -11.66630 -11.34970 -10.65367 -10.58926 -9.41729 -9.36315 -8.22591 -6.37562 1.12492 1.35992 1.38386 1.50209 1.68287 1.85908 2.29795 2.43182 3.00278 3.06811 3.27909 3.56984 3.75788 3.85763 4.02324 4.07398 4.18394 4.25187 4.30715 4.32626 4.34496 4.37755 4.42529 4.55048 4.61480 4.63659 4.71938 4.74884 4.91986 4.93142 4.95747 4.99296 5.03134 5.05069 5.10699 5.14473 5.21439 5.24003 5.35551 5.56789 5.84842 5.89927 5.97442 6.06045 6.68543 6.69876 6.80637 7.28276 7.49973 8.84691 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.027801 B = 0.002480 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.922137 B =11289.047141 C =11468.789918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.087 4.087 6 H 0.137 0.863 7 C -0.099 4.099 8 C 0.022 3.978 9 N -0.516 5.516 10 C 0.066 3.934 11 C -0.119 4.119 12 C 0.494 3.506 13 O -0.600 6.600 14 N -0.612 5.612 15 C 0.080 3.920 16 C 0.257 3.743 17 C -0.539 4.539 18 H 0.054 0.946 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.269 1.269 24 H -0.282 1.282 25 C 0.068 3.932 26 H 0.088 0.912 27 C -0.174 4.174 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.068 0.932 42 H 0.023 0.977 43 H -0.004 1.004 44 H 0.267 0.733 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 -20.462 -0.031 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.107 4.107 6 H 0.155 0.845 7 C -0.137 4.137 8 C -0.105 4.105 9 N -0.240 5.240 10 C -0.063 4.063 11 C -0.159 4.159 12 C 0.283 3.717 13 O -0.482 6.482 14 N -0.343 5.343 15 C -0.062 4.062 16 C 0.135 3.865 17 C -0.578 4.578 18 H 0.072 0.928 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.208 1.208 25 C -0.040 4.040 26 H 0.106 0.894 27 C -0.233 4.233 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.014 0.986 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.263 -19.479 0.053 28.836 hybrid contribution 1.247 0.371 1.179 1.756 sum -20.016 -19.108 1.232 27.699 Atomic orbital electron populations 1.23553 0.74902 1.05744 1.02395 1.86500 1.24835 1.32410 1.83633 1.23796 0.92327 0.81175 0.70960 1.90659 1.67699 1.37489 1.46646 1.22034 0.86811 0.97835 1.04021 0.84517 1.22475 0.97332 1.00006 0.93881 1.23496 0.96686 0.87314 1.02981 1.65064 1.21769 1.08864 1.28278 1.21928 0.91300 0.96686 0.96376 1.21642 0.93903 0.99255 1.01098 1.21359 0.83748 0.83770 0.82781 1.90634 1.77539 1.51090 1.28959 1.48199 1.26180 1.41929 1.17997 1.21938 1.03601 0.96148 0.84529 1.18782 0.84131 0.87992 0.95556 1.21718 0.99396 0.96092 1.40575 0.92798 1.25909 1.01807 0.95620 0.96166 1.70061 1.29186 1.08952 1.48790 0.85337 0.78548 0.78686 0.78044 1.18923 1.19402 1.20839 1.22435 0.97530 0.94908 0.89159 0.89448 1.22390 1.00213 1.02212 0.98437 0.92173 0.84865 0.92139 0.86845 0.90368 0.87638 0.92536 0.93721 0.92194 0.86361 0.86700 0.92142 0.88094 0.91322 0.95895 0.98636 0.92427 0.92873 0.90710 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.62 10.56 -51.36 -0.54 -6.16 16 3 C 0.47 9.22 7.12 71.24 0.51 9.73 16 4 O -0.54 -14.16 14.99 21.97 0.33 -13.83 16 5 C -0.09 -1.39 3.13 -10.66 -0.03 -1.42 16 6 H 0.14 1.58 7.68 -2.39 -0.02 1.56 16 7 C -0.10 -1.23 6.60 31.80 0.21 -1.02 16 8 C 0.02 0.35 5.09 86.65 0.44 0.79 16 9 N -0.52 -11.52 5.39 -858.12 -4.62 -16.14 16 10 C 0.07 1.84 3.29 86.30 0.28 2.12 16 11 C -0.12 -3.24 3.91 29.85 0.12 -3.12 16 12 C 0.49 20.51 7.67 87.66 0.67 21.18 16 13 O -0.60 -31.41 15.56 -3.03 -0.05 -31.45 16 14 N -0.61 -26.03 2.86 -851.11 -2.43 -28.46 16 15 C 0.08 2.32 10.29 127.77 1.31 3.63 16 16 C 0.26 14.09 5.20 85.63 0.45 14.54 16 17 C -0.54 -31.35 9.39 25.60 0.24 -31.11 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 21 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 C 0.07 1.47 3.36 45.06 0.15 1.62 16 26 H 0.09 2.33 6.44 -2.39 -0.02 2.31 16 27 C -0.17 -3.69 7.60 71.98 0.55 -3.14 16 28 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 29 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.03 7.86 -2.38 -0.02 1.01 16 33 H 0.11 1.37 7.66 -2.39 -0.02 1.35 16 34 H 0.06 0.88 8.00 -2.39 -0.02 0.87 16 35 H 0.04 1.37 5.62 -2.39 -0.01 1.35 16 36 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.12 2.67 7.40 -2.39 -0.02 2.66 16 38 H 0.11 2.50 6.76 -2.38 -0.02 2.48 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 2.04 6.44 -2.39 -0.02 2.03 16 41 H 0.07 1.97 7.89 -2.39 -0.02 1.96 16 42 H 0.02 1.28 7.89 -2.38 -0.02 1.26 16 43 H 0.00 -0.29 7.42 -2.39 -0.02 -0.30 16 44 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.05 1.37 6.72 -2.39 -0.02 1.35 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.30 7.65 -2.38 -0.02 1.28 16 Total: -1.00 -80.40 376.65 2.50 -77.89 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.95 Total: 11.72 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.56 Total: 15.96 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -6.77 Total: -101.24 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.26 Total: -51.44 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -80.40 2.50 -77.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346993937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.505 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds