Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99859 * 2 1 4 4 O 1.20829 * 120.00341 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00017 * 180.02562 * 3 2 1 6 6 H 1.09005 * 110.34941 * 330.83473 * 5 3 2 7 7 C 1.54597 * 110.30993 * 208.69902 * 5 3 2 8 8 C 1.54939 * 102.91929 * 219.12456 * 7 5 3 9 9 N 1.48534 * 103.22848 * 37.41115 * 8 7 5 10 10 C 1.46898 * 110.99975 * 200.27873 * 9 8 7 11 11 C 1.53003 * 109.47105 * 287.39833 * 10 9 8 12 12 C 1.50704 * 109.46933 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99913 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99770 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00261 * 359.97438 * 14 12 11 16 16 C 1.46505 * 120.00026 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.46864 * 269.99852 * 16 14 12 18 18 H 1.07997 * 119.99967 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99571 * 180.02562 * 17 16 14 20 20 N 1.31519 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99722 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47285 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47215 * 299.99623 * 21 19 17 24 24 H 1.48506 * 109.47185 * 59.99659 * 21 19 17 25 25 C 1.47898 * 105.81808 * 320.79422 * 9 8 7 26 26 H 1.09003 * 109.91622 * 265.97269 * 25 9 8 27 27 C 1.52999 * 109.91666 * 144.68429 * 25 9 8 28 28 H 1.09001 * 109.47378 * 300.00183 * 1 2 3 29 29 H 1.09000 * 109.47131 * 59.99728 * 1 2 3 30 30 H 1.09003 * 109.47336 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.72067 * 337.48090 * 7 5 3 32 32 H 1.08998 * 110.72723 * 100.58367 * 7 5 3 33 33 H 1.08997 * 110.66952 * 278.97453 * 8 7 5 34 34 H 1.09002 * 110.66453 * 155.84472 * 8 7 5 35 35 H 1.08998 * 109.47124 * 167.39479 * 10 9 8 36 36 H 1.09004 * 109.46934 * 47.39484 * 10 9 8 37 37 H 1.08998 * 109.47419 * 59.99826 * 11 10 9 38 38 H 1.09004 * 109.46939 * 299.99647 * 11 10 9 39 39 H 1.08995 * 109.47043 * 270.00883 * 15 14 12 40 40 H 1.08999 * 109.46696 * 30.00270 * 15 14 12 41 41 H 1.08992 * 109.46968 * 150.00591 * 15 14 12 42 42 H 1.08998 * 109.46870 * 149.99300 * 16 14 12 43 43 H 1.09005 * 109.46825 * 29.99467 * 16 14 12 44 44 H 0.96998 * 119.99568 * 0.02562 * 20 19 17 45 45 H 1.09001 * 109.47588 * 64.56207 * 27 25 9 46 46 H 1.08998 * 109.47603 * 184.56613 * 27 25 9 47 47 H 1.08999 * 109.47142 * 304.56769 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9918 0.4034 0.4971 7 6 4.0358 2.5728 0.6957 8 6 5.2326 3.0222 -0.1798 9 7 4.7954 2.6761 -1.5565 10 6 5.9457 2.5764 -2.4647 11 6 6.4910 3.9766 -2.7526 12 6 7.6707 3.8744 -3.6848 13 8 8.0393 2.7885 -4.0796 14 7 8.3168 4.9896 -4.0789 15 6 7.8719 6.3013 -3.6016 16 6 9.4640 4.8902 -4.9847 17 6 10.7292 4.7456 -4.1789 18 1 10.6834 4.7297 -3.1000 19 6 11.9452 4.6345 -4.8190 20 7 12.0011 4.6543 -6.1328 21 14 13.5136 4.4560 -3.8201 22 1 14.6764 4.3551 -4.7382 23 1 13.6781 5.6412 -2.9408 24 1 13.4331 3.2291 -2.9873 25 6 4.0956 1.3781 -1.4429 26 1 4.7909 0.5627 -1.6427 27 6 2.9288 1.3268 -2.4312 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.2461 3.3240 0.6844 32 1 4.3569 2.3683 1.7171 33 1 6.1337 2.4704 0.0878 34 1 5.3957 4.0959 -0.0865 35 1 5.6321 2.1095 -3.3983 36 1 6.7244 1.9717 -1.9997 37 1 6.8047 4.4435 -1.8190 38 1 5.7124 4.5813 -3.2176 39 1 7.1309 6.7065 -4.2906 40 1 7.4283 6.1963 -2.6115 41 1 8.7255 6.9768 -3.5476 42 1 9.5233 5.7907 -5.5960 43 1 9.3429 4.0202 -5.6302 44 1 11.1867 4.7473 -6.6515 45 1 3.3139 1.3619 -3.4503 46 1 2.3696 0.4026 -2.2857 47 1 2.2714 2.1797 -2.2619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346993953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -119.526680 kcal Electronic energy + Delta-G solvation = -26514.913324 eV Core-core repulsion = 22697.843237 eV Total energy + Delta-G solvation = -3817.070086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24190 -39.43060 -38.68598 -36.70573 -34.99716 -33.66539 -32.79089 -31.71825 -30.01213 -28.20456 -27.30463 -26.26071 -25.60285 -23.67716 -22.92484 -22.29391 -20.90767 -19.95384 -18.48262 -17.92807 -17.02625 -16.89065 -16.83442 -16.54246 -15.58972 -15.55713 -15.27879 -14.87352 -14.46398 -14.01780 -13.85666 -13.71182 -13.42284 -13.06206 -12.89223 -12.53183 -12.42956 -12.38733 -12.35361 -12.17395 -12.05942 -11.76598 -11.62855 -11.49034 -11.27028 -11.23154 -11.11795 -11.02193 -10.90243 -10.74242 -10.61765 -10.57034 -10.10499 -9.12826 -8.98945 -8.62237 -8.38859 -7.62023 -6.38648 -4.10565 1.88759 2.35949 3.36642 3.42650 3.46353 3.53648 3.64012 4.01191 4.12187 4.18141 4.49853 4.53853 4.74338 4.78978 4.82810 4.88702 5.01167 5.10178 5.12987 5.14795 5.16091 5.22902 5.36775 5.38567 5.40226 5.55647 5.56671 5.60857 5.71818 5.79166 5.83255 5.87599 5.98745 6.01646 6.05688 6.12185 6.16012 6.69419 6.81572 6.86832 7.13027 7.40088 7.45020 8.04006 8.29212 8.42924 8.77531 9.01574 9.59246 10.98626 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029020 B = 0.002420 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.631407 B =11568.775345 C =11673.932693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.478 3.522 4 O -0.500 6.500 5 C -0.093 4.093 6 H 0.108 0.892 7 C -0.114 4.114 8 C 0.034 3.966 9 N -0.512 5.512 10 C 0.064 3.936 11 C -0.131 4.131 12 C 0.505 3.495 13 O -0.546 6.546 14 N -0.600 5.600 15 C 0.085 3.915 16 C 0.235 3.765 17 C -0.605 4.605 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.909 5.909 21 Si 1.072 2.928 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.080 3.920 26 H 0.071 0.929 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.021 0.979 43 H 0.033 0.967 44 H 0.267 0.733 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.880 -5.524 14.361 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.321 3.679 4 O -0.387 6.387 5 C -0.113 4.113 6 H 0.126 0.874 7 C -0.152 4.152 8 C -0.094 4.094 9 N -0.237 5.237 10 C -0.064 4.064 11 C -0.171 4.171 12 C 0.291 3.709 13 O -0.424 6.424 14 N -0.332 5.332 15 C -0.060 4.060 16 C 0.115 3.885 17 C -0.644 4.644 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.545 5.545 21 Si 0.900 3.100 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.214 1.214 25 C -0.028 4.028 26 H 0.089 0.911 27 C -0.212 4.212 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.594 -5.550 13.769 25.387 hybrid contribution -1.316 -0.272 0.496 1.432 sum -21.910 -5.822 14.265 26.785 Atomic orbital electron populations 1.23270 0.76377 1.03689 1.02605 1.86536 1.23422 1.33617 1.84183 1.23347 0.91639 0.81331 0.71606 1.90664 1.66810 1.36253 1.44938 1.22034 0.87982 1.02072 0.99185 0.87404 1.22614 0.99069 0.95224 0.98291 1.23293 0.96065 1.02174 0.87831 1.64718 1.24185 1.26827 1.07959 1.21996 0.90862 0.96368 0.97186 1.21558 0.96948 0.98607 1.00017 1.20337 0.83997 0.84461 0.82077 1.90660 1.67600 1.27015 1.57174 1.47964 1.31891 1.05311 1.47992 1.21637 1.00059 0.85932 0.98323 1.19336 0.82981 0.96953 0.89244 1.22234 0.92468 1.55231 0.94467 0.93143 1.25825 1.01972 0.93726 0.97057 1.70803 1.32011 1.46257 1.05463 0.83503 0.75254 0.76493 0.74772 1.20642 1.21453 1.21436 1.22200 0.96473 0.92344 0.91824 0.91122 1.22010 0.97478 1.01917 0.99753 0.91923 0.91806 0.88106 0.88653 0.90146 0.92927 0.89121 0.89911 0.93309 0.89570 0.88809 0.93683 0.92186 0.90885 0.96124 0.94880 0.92231 0.91412 0.92149 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.27 10.11 -39.25 -0.40 -3.66 16 3 C 0.48 4.90 4.84 36.01 0.17 5.08 16 4 O -0.50 -6.34 14.76 -18.75 -0.28 -6.62 16 5 C -0.09 -0.84 3.49 -90.42 -0.32 -1.15 16 6 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.11 -1.00 6.55 -24.87 -0.16 -1.16 16 8 C 0.03 0.33 5.91 -1.90 -0.01 0.32 16 9 N -0.51 -5.96 4.88 -222.58 -1.09 -7.05 16 10 C 0.06 0.89 3.99 -3.82 -0.02 0.88 16 11 C -0.13 -1.93 4.34 -27.88 -0.12 -2.05 16 12 C 0.50 10.51 7.67 -10.98 -0.08 10.43 16 13 O -0.55 -13.73 15.56 5.56 0.09 -13.65 16 14 N -0.60 -12.93 2.86 -182.95 -0.52 -13.45 16 15 C 0.08 1.36 10.24 59.85 0.61 1.97 16 16 C 0.23 6.20 4.47 -5.19 -0.02 6.18 16 17 C -0.61 -17.51 9.39 -34.44 -0.32 -17.83 16 18 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 19 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 20 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 21 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.08 0.83 3.05 -66.65 -0.20 0.63 16 26 H 0.07 0.72 7.77 -51.93 -0.40 0.31 16 27 C -0.15 -1.61 8.36 37.16 0.31 -1.30 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.97 6.89 -51.93 -0.36 0.62 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.51 7.81 -51.93 -0.41 0.11 16 34 H 0.09 0.85 7.80 -51.93 -0.41 0.44 16 35 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 36 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 37 H 0.09 1.14 6.63 -51.93 -0.34 0.79 16 38 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 41 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.02 0.55 7.94 -51.93 -0.41 0.13 16 43 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 44 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.57 7.10 -51.93 -0.37 0.20 16 47 H 0.07 0.84 7.08 -51.93 -0.37 0.47 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -35.68 378.13 -7.91 -43.60 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.90 Total: -2.00 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.81 Total: 3.72 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.85 Total: -47.71 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.59 Total: -23.93 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.68 -7.91 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346993953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.931 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds