Wall clock time and date at job start Fri Apr 10 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99859 * 2 1 4 4 O 1.20829 * 120.00341 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00017 * 180.02562 * 3 2 1 6 6 H 1.09005 * 110.34941 * 330.83473 * 5 3 2 7 7 C 1.54597 * 110.30993 * 208.69902 * 5 3 2 8 8 C 1.54939 * 102.91929 * 219.12456 * 7 5 3 9 9 N 1.48534 * 103.22848 * 37.41115 * 8 7 5 10 10 C 1.46898 * 110.99975 * 200.27873 * 9 8 7 11 11 C 1.53003 * 109.47105 * 287.39833 * 10 9 8 12 12 C 1.50704 * 109.46933 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99913 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99770 * 180.02562 * 12 11 10 15 15 C 1.46503 * 120.00261 * 359.97438 * 14 12 11 16 16 C 1.46505 * 120.00026 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.46864 * 269.99852 * 16 14 12 18 18 H 1.07997 * 119.99967 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99571 * 180.02562 * 17 16 14 20 20 N 1.31519 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99722 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47285 * 179.97438 * 21 19 17 23 23 H 1.48493 * 109.47215 * 299.99623 * 21 19 17 24 24 H 1.48506 * 109.47185 * 59.99659 * 21 19 17 25 25 C 1.47898 * 105.81808 * 320.79422 * 9 8 7 26 26 H 1.09003 * 109.91622 * 265.97269 * 25 9 8 27 27 C 1.52999 * 109.91666 * 144.68429 * 25 9 8 28 28 H 1.09001 * 109.47378 * 300.00183 * 1 2 3 29 29 H 1.09000 * 109.47131 * 59.99728 * 1 2 3 30 30 H 1.09003 * 109.47336 * 179.97438 * 1 2 3 31 31 H 1.09002 * 110.72067 * 337.48090 * 7 5 3 32 32 H 1.08998 * 110.72723 * 100.58367 * 7 5 3 33 33 H 1.08997 * 110.66952 * 278.97453 * 8 7 5 34 34 H 1.09002 * 110.66453 * 155.84472 * 8 7 5 35 35 H 1.08998 * 109.47124 * 167.39479 * 10 9 8 36 36 H 1.09004 * 109.46934 * 47.39484 * 10 9 8 37 37 H 1.08998 * 109.47419 * 59.99826 * 11 10 9 38 38 H 1.09004 * 109.46939 * 299.99647 * 11 10 9 39 39 H 1.08995 * 109.47043 * 270.00883 * 15 14 12 40 40 H 1.08999 * 109.46696 * 30.00270 * 15 14 12 41 41 H 1.08992 * 109.46968 * 150.00591 * 15 14 12 42 42 H 1.08998 * 109.46870 * 149.99300 * 16 14 12 43 43 H 1.09005 * 109.46825 * 29.99467 * 16 14 12 44 44 H 0.96998 * 119.99568 * 0.02562 * 20 19 17 45 45 H 1.09001 * 109.47588 * 64.56207 * 27 25 9 46 46 H 1.08998 * 109.47603 * 184.56613 * 27 25 9 47 47 H 1.08999 * 109.47142 * 304.56769 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9918 0.4034 0.4971 7 6 4.0358 2.5728 0.6957 8 6 5.2326 3.0222 -0.1798 9 7 4.7954 2.6761 -1.5565 10 6 5.9457 2.5764 -2.4647 11 6 6.4910 3.9766 -2.7526 12 6 7.6707 3.8744 -3.6848 13 8 8.0393 2.7885 -4.0796 14 7 8.3168 4.9896 -4.0789 15 6 7.8719 6.3013 -3.6016 16 6 9.4640 4.8902 -4.9847 17 6 10.7292 4.7456 -4.1789 18 1 10.6834 4.7297 -3.1000 19 6 11.9452 4.6345 -4.8190 20 7 12.0011 4.6543 -6.1328 21 14 13.5136 4.4560 -3.8201 22 1 14.6764 4.3551 -4.7382 23 1 13.6781 5.6412 -2.9408 24 1 13.4331 3.2291 -2.9873 25 6 4.0956 1.3781 -1.4429 26 1 4.7909 0.5627 -1.6427 27 6 2.9288 1.3268 -2.4312 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.2461 3.3240 0.6844 32 1 4.3569 2.3683 1.7171 33 1 6.1337 2.4704 0.0878 34 1 5.3957 4.0959 -0.0865 35 1 5.6321 2.1095 -3.3983 36 1 6.7244 1.9717 -1.9997 37 1 6.8047 4.4435 -1.8190 38 1 5.7124 4.5813 -3.2176 39 1 7.1309 6.7065 -4.2906 40 1 7.4283 6.1963 -2.6115 41 1 8.7255 6.9768 -3.5476 42 1 9.5233 5.7907 -5.5960 43 1 9.3429 4.0202 -5.6302 44 1 11.1867 4.7473 -6.6515 45 1 3.3139 1.3619 -3.4503 46 1 2.3696 0.4026 -2.2857 47 1 2.2714 2.1797 -2.2619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346993953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:21 Heat of formation + Delta-G solvation = -143.891676 kcal Electronic energy + Delta-G solvation = -26515.969869 eV Core-core repulsion = 22697.843237 eV Total energy + Delta-G solvation = -3818.126632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01696 -40.84350 -39.75775 -37.48783 -36.81076 -35.05840 -34.56309 -32.50065 -31.19480 -29.32980 -28.61360 -27.31256 -26.93260 -25.39673 -23.78779 -23.66770 -21.83898 -20.75382 -20.07746 -19.05009 -18.68755 -18.04673 -17.62730 -17.53251 -17.13821 -16.74573 -16.49835 -15.93536 -15.70570 -15.49990 -15.06622 -14.70716 -14.62966 -14.22857 -14.00599 -13.82096 -13.71155 -13.61144 -13.44508 -13.26974 -13.15840 -13.00612 -12.92911 -12.85321 -12.61440 -12.46667 -12.25655 -12.04747 -11.95863 -11.89113 -11.75747 -11.72550 -11.42063 -11.20368 -10.71267 -10.62559 -9.53824 -9.47575 -8.70168 -6.46355 1.11254 1.49032 1.58342 1.70980 1.75270 1.78128 2.20430 2.53627 2.87031 3.09059 3.36378 3.39107 3.74841 3.82450 3.97036 4.05380 4.10540 4.21707 4.26839 4.30437 4.32996 4.34347 4.38446 4.55430 4.57663 4.58626 4.60872 4.71009 4.74089 4.77051 4.83122 4.90158 4.91311 4.93447 4.97329 4.99440 5.15963 5.16563 5.37918 5.53571 5.80824 5.83122 5.91408 6.12544 6.43267 6.66383 6.71147 7.27550 7.40103 8.64387 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.029020 B = 0.002420 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.631407 B =11568.775345 C =11673.932693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.480 3.520 4 O -0.529 6.529 5 C -0.091 4.091 6 H 0.131 0.869 7 C -0.107 4.107 8 C 0.030 3.970 9 N -0.516 5.516 10 C 0.074 3.926 11 C -0.112 4.112 12 C 0.495 3.505 13 O -0.600 6.600 14 N -0.609 5.609 15 C 0.079 3.921 16 C 0.244 3.756 17 C -0.615 4.615 18 H 0.046 0.954 19 C -0.034 4.034 20 N -0.931 5.931 21 Si 1.120 2.880 22 H -0.280 1.280 23 H -0.260 1.260 24 H -0.279 1.279 25 C 0.076 3.924 26 H 0.073 0.927 27 C -0.148 4.148 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.017 0.983 43 H -0.008 1.008 44 H 0.254 0.746 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.600 -5.235 16.980 28.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.324 3.676 4 O -0.418 6.418 5 C -0.111 4.111 6 H 0.149 0.851 7 C -0.145 4.145 8 C -0.097 4.097 9 N -0.240 5.240 10 C -0.055 4.055 11 C -0.152 4.152 12 C 0.284 3.716 13 O -0.482 6.482 14 N -0.340 5.340 15 C -0.063 4.063 16 C 0.122 3.878 17 C -0.654 4.654 18 H 0.065 0.935 19 C -0.232 4.232 20 N -0.568 5.568 21 Si 0.940 3.060 22 H -0.205 1.205 23 H -0.185 1.185 24 H -0.205 1.205 25 C -0.033 4.033 26 H 0.091 0.909 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.010 0.990 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.371 -5.230 16.412 27.448 hybrid contribution -1.211 -0.389 -0.344 1.317 sum -22.581 -5.619 16.068 28.278 Atomic orbital electron populations 1.23534 0.74956 1.05616 1.02492 1.86528 1.24875 1.32935 1.83726 1.23551 0.92054 0.81204 0.70751 1.90653 1.67535 1.37210 1.46362 1.22094 0.87331 1.03347 0.98343 0.85082 1.22579 0.98037 0.94519 0.99370 1.23407 0.96661 1.02849 0.86770 1.64710 1.22939 1.27598 1.08798 1.21787 0.91211 0.95468 0.97032 1.21481 0.94530 0.99738 0.99417 1.21426 0.84896 0.83279 0.81952 1.90629 1.69368 1.29066 1.59161 1.48056 1.30658 1.07924 1.47356 1.21942 1.00440 0.83022 1.00880 1.18880 0.84538 0.94830 0.89546 1.22522 0.93652 1.54787 0.94416 0.93532 1.27423 1.05837 0.92672 0.97295 1.70929 1.31356 1.48134 1.06425 0.82911 0.71346 0.77836 0.73877 1.20500 1.18508 1.20455 1.22252 0.96299 0.91888 0.92827 0.90875 1.21941 0.97355 1.01720 0.99517 0.91797 0.92218 0.85216 0.90096 0.87692 0.92529 0.88226 0.91577 0.94807 0.86964 0.86556 0.91128 0.88416 0.91773 0.96459 0.99027 0.93621 0.92064 0.91195 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.97 10.11 -51.37 -0.52 -6.49 16 3 C 0.48 9.15 4.84 71.24 0.34 9.49 16 4 O -0.53 -12.95 14.76 21.95 0.32 -12.62 16 5 C -0.09 -1.46 3.49 -10.66 -0.04 -1.50 16 6 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 7 C -0.11 -1.61 6.55 31.80 0.21 -1.40 16 8 C 0.03 0.52 5.91 86.65 0.51 1.03 16 9 N -0.52 -11.13 4.88 -858.10 -4.18 -15.31 16 10 C 0.07 1.99 3.99 86.30 0.34 2.33 16 11 C -0.11 -3.07 4.34 29.85 0.13 -2.94 16 12 C 0.50 20.57 7.67 87.66 0.67 21.24 16 13 O -0.60 -31.20 15.56 -3.03 -0.05 -31.25 16 14 N -0.61 -26.11 2.86 -851.12 -2.43 -28.54 16 15 C 0.08 2.36 10.24 127.77 1.31 3.67 16 16 C 0.24 13.30 4.47 85.63 0.38 13.69 16 17 C -0.62 -36.09 9.39 25.60 0.24 -35.85 16 18 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 19 C -0.03 -2.03 5.46 84.65 0.46 -1.56 16 20 N -0.93 -58.58 13.65 21.45 0.29 -58.29 16 21 Si 1.12 51.26 29.90 68.60 2.05 53.31 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.08 1.48 3.05 45.06 0.14 1.61 16 26 H 0.07 1.40 7.77 -2.39 -0.02 1.38 16 27 C -0.15 -2.99 8.36 71.98 0.60 -2.39 16 28 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.50 6.89 -2.39 -0.02 1.48 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 0.95 7.81 -2.39 -0.02 0.93 16 34 H 0.10 1.53 7.80 -2.39 -0.02 1.51 16 35 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 36 H 0.03 1.01 7.79 -2.39 -0.02 0.99 16 37 H 0.11 2.55 6.63 -2.39 -0.02 2.53 16 38 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 41 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 42 H 0.02 0.95 7.94 -2.39 -0.02 0.93 16 43 H -0.01 -0.52 7.29 -2.38 -0.02 -0.53 16 44 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.25 7.10 -2.39 -0.02 1.23 16 47 H 0.05 1.30 7.08 -2.39 -0.02 1.28 16 Total: -1.00 -80.43 378.13 3.03 -77.40 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.04 Total: 12.86 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.51 Total: 8.93 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -6.32 Total: -102.14 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.24 Total: -50.36 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Total: -80.43 3.03 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346993953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.493 kcal (2) G-P(sol) polarization free energy of solvation -80.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds