Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46817 * 2 1 4 4 C 1.34227 * 116.99794 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00369 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99670 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46887 * 174.33309 * 6 4 3 8 8 C 1.46898 * 111.00127 * 288.34097 * 7 6 4 9 9 C 1.50704 * 109.47309 * 169.99899 * 8 7 6 10 10 O 1.21285 * 119.99763 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00063 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00183 * 0.02562 * 11 9 8 13 13 C 1.53000 * 109.47386 * 89.99410 * 12 11 9 14 14 C 1.46500 * 119.99791 * 180.02562 * 11 9 8 15 15 C 1.50696 * 109.47024 * 90.00679 * 14 11 9 16 16 H 1.08001 * 120.00297 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99870 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99685 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47066 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47193 * 119.99548 * 19 17 15 22 22 H 1.48499 * 109.47089 * 240.00016 * 19 17 15 23 23 C 1.46894 * 110.99917 * 164.38320 * 7 6 4 24 24 C 1.52998 * 117.50053 * 6.64590 * 23 7 6 25 25 C 1.53007 * 60.00232 * 252.50974 * 24 23 7 26 26 H 1.08998 * 109.47223 * 60.00653 * 1 2 3 27 27 H 1.08998 * 109.46797 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47811 * 299.99907 * 1 2 3 29 29 H 1.09000 * 109.47191 * 239.99717 * 2 1 3 30 30 H 1.08992 * 109.46799 * 119.99413 * 2 1 3 31 31 H 1.08996 * 109.47323 * 294.33389 * 6 4 3 32 32 H 1.09001 * 109.46968 * 54.33920 * 6 4 3 33 33 H 1.09000 * 109.46993 * 289.99477 * 8 7 6 34 34 H 1.08993 * 109.47345 * 49.99913 * 8 7 6 35 35 H 1.08999 * 109.47328 * 209.99768 * 12 11 9 36 36 H 1.09005 * 109.46969 * 329.99540 * 12 11 9 37 37 H 1.08995 * 109.47398 * 60.00482 * 13 12 11 38 38 H 1.09007 * 109.47050 * 180.02562 * 13 12 11 39 39 H 1.08998 * 109.46924 * 299.99522 * 13 12 11 40 40 H 1.09005 * 109.47213 * 210.00660 * 14 11 9 41 41 H 1.09001 * 109.47560 * 329.99989 * 14 11 9 42 42 H 0.97005 * 119.99294 * 180.02562 * 18 17 15 43 43 H 1.09004 * 115.55040 * 152.35562 * 23 7 6 44 44 H 1.08997 * 117.49643 * 359.97438 * 24 23 7 45 45 H 1.08995 * 117.50161 * 145.02298 * 24 23 7 46 46 H 1.08999 * 117.49705 * 252.51139 * 25 24 23 47 47 H 1.08994 * 117.52096 * 107.47663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3813 2.8634 0.1375 8 6 5.7621 2.4560 1.4965 9 6 7.2379 2.1533 1.5352 10 8 7.9067 2.2662 0.5297 11 7 7.8148 1.7580 2.6873 12 6 7.0071 1.6221 3.9020 13 6 6.4528 0.1987 3.9893 14 6 9.2495 1.4643 2.7250 15 6 10.0102 2.7189 3.0686 16 1 9.4783 3.6429 3.2411 17 6 11.3856 2.6876 3.1616 18 7 12.0334 1.5626 2.9510 19 14 12.3287 4.2430 3.5867 20 1 11.3741 5.3651 3.7737 21 1 13.0948 4.0302 4.8408 22 1 13.2667 4.5704 2.4830 23 6 6.0097 4.1408 -0.2248 24 6 5.0859 5.3259 -0.5127 25 6 5.8260 4.6363 -1.6607 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.6686 3.4346 -0.9367 32 1 3.5054 3.5027 0.8344 33 1 5.5385 3.2633 2.1939 34 1 5.2011 1.5655 1.7796 35 1 7.6271 1.8248 4.7752 36 1 6.1809 2.3324 3.8702 37 1 7.2789 -0.5116 4.0211 38 1 5.8515 0.0977 4.8929 39 1 5.8327 -0.0039 3.1161 40 1 9.4448 0.7027 3.4801 41 1 9.5716 1.0996 1.7496 42 1 13.0009 1.5405 3.0168 43 1 6.9619 4.3511 0.2622 44 1 4.0119 5.1577 -0.4337 45 1 5.4302 6.3163 -0.2150 46 1 6.6571 5.1730 -2.1181 47 1 5.2392 4.0143 -2.3365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353435715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -98.923071 kcal Electronic energy + Delta-G solvation = -27198.392240 eV Core-core repulsion = 23382.215593 eV Total energy + Delta-G solvation = -3816.176647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75251 -40.80342 -39.32944 -37.60329 -36.87986 -35.08213 -34.67938 -32.70229 -31.67309 -30.51528 -28.97204 -26.90922 -24.76104 -24.22632 -23.95314 -23.26408 -22.49648 -21.05697 -19.87302 -18.97131 -18.64208 -18.11928 -17.91789 -17.47317 -17.20574 -16.67761 -16.42027 -16.00063 -15.67690 -15.31891 -14.88986 -14.71548 -14.61772 -14.30039 -14.17049 -13.77912 -13.62177 -13.55935 -13.29524 -13.26682 -13.13464 -12.94461 -12.69027 -12.65351 -12.49126 -12.48540 -12.34211 -12.17909 -12.02453 -11.79382 -11.67286 -11.49852 -11.34934 -11.26355 -10.65507 -10.52143 -9.41326 -9.15858 -8.22030 -6.37304 1.18178 1.35442 1.38197 1.48419 1.50148 1.87959 2.19683 2.40107 2.75820 3.02673 3.07153 3.55851 3.75201 3.92272 3.95318 4.02116 4.07485 4.08762 4.11552 4.12569 4.24927 4.29372 4.36739 4.38409 4.43082 4.61344 4.76967 4.83794 4.86593 4.92679 4.95245 4.95867 5.02740 5.05347 5.17140 5.21791 5.25356 5.34346 5.46530 5.58370 5.77140 5.88777 5.90437 6.06832 6.71061 6.79177 6.82685 7.28990 7.53961 8.85456 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.003625 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.625020 B = 7722.605268 C = 8875.452118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.459 3.541 5 O -0.525 6.525 6 C 0.061 3.939 7 N -0.503 5.503 8 C 0.055 3.945 9 C 0.499 3.501 10 O -0.575 6.575 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.161 4.161 14 C 0.265 3.735 15 C -0.537 4.537 16 H 0.055 0.945 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.269 1.269 22 H -0.283 1.283 23 C 0.011 3.989 24 C -0.187 4.187 25 C -0.173 4.173 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.019 0.981 41 H -0.009 1.009 42 H 0.266 0.734 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.852 4.053 -1.699 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.302 3.698 5 O -0.413 6.413 6 C -0.067 4.067 7 N -0.226 5.226 8 C -0.075 4.075 9 C 0.287 3.713 10 O -0.454 6.454 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.219 4.219 14 C 0.144 3.856 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.795 3.205 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.209 1.209 23 C -0.097 4.097 24 C -0.225 4.225 25 C -0.211 4.211 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.009 0.991 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.146 0.854 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.978 3.313 -2.519 26.309 hybrid contribution 1.267 0.404 0.481 1.414 sum -24.711 3.717 -2.038 25.072 Atomic orbital electron populations 1.21809 0.90064 1.04279 1.03933 1.23260 0.97188 0.79306 1.02279 1.86476 1.23429 1.33530 1.83917 1.24014 0.80749 0.93012 0.72024 1.90731 1.61141 1.44130 1.45338 1.21878 0.87007 0.90174 1.07615 1.60838 1.06878 1.29931 1.24942 1.21983 0.92223 1.02747 0.90542 1.20986 0.90521 0.77054 0.82720 1.90640 1.66097 1.53455 1.35232 1.48269 1.09837 1.65948 1.09867 1.21726 0.95218 0.98201 0.87001 1.22149 1.00752 0.96093 1.02891 1.18654 0.76519 0.95416 0.95040 1.21713 0.92269 0.96050 1.47576 0.92658 1.25917 0.98594 0.99907 0.94997 1.70083 1.08689 1.27988 1.50314 0.85323 0.78280 0.78956 0.77962 1.18798 1.19416 1.20893 1.22410 0.98835 0.87053 1.01426 1.23769 0.99574 0.97148 1.02054 1.23086 1.03528 1.03113 0.91368 0.91080 0.88551 0.90879 0.91975 0.91578 0.83830 0.86598 0.89093 0.87409 0.90482 0.88319 0.94323 0.88313 0.93269 0.96338 0.99102 0.92469 0.89131 0.85441 0.87623 0.88787 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 10.29 71.98 0.74 -0.60 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.36 -6.86 10.22 -51.38 -0.53 -7.39 16 4 C 0.46 11.03 7.47 71.24 0.53 11.56 16 5 O -0.53 -17.50 14.92 21.97 0.33 -17.17 16 6 C 0.06 1.19 4.21 85.56 0.36 1.55 16 7 N -0.50 -15.00 4.05 -880.06 -3.56 -18.56 16 8 C 0.06 1.74 3.64 85.56 0.31 2.06 16 9 C 0.50 22.41 7.18 87.66 0.63 23.04 16 10 O -0.58 -31.81 14.42 -3.04 -0.04 -31.85 16 11 N -0.61 -27.34 2.46 -826.16 -2.03 -29.37 16 12 C 0.10 3.27 5.93 86.38 0.51 3.78 16 13 C -0.16 -4.50 10.24 71.98 0.74 -3.76 16 14 C 0.27 15.06 5.16 85.63 0.44 15.50 16 15 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 16 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 17 C 0.00 0.26 5.46 84.66 0.46 0.72 16 18 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 19 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 23 C 0.01 0.33 5.21 44.92 0.23 0.56 16 24 C -0.19 -3.41 9.53 30.60 0.29 -3.12 16 25 C -0.17 -4.14 9.96 30.60 0.30 -3.84 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.14 2.16 5.84 -2.39 -0.01 2.14 16 32 H 0.12 1.48 7.88 -2.39 -0.02 1.46 16 33 H 0.09 2.27 7.38 -2.39 -0.02 2.25 16 34 H 0.11 3.24 5.56 -2.39 -0.01 3.23 16 35 H 0.08 2.58 8.07 -2.39 -0.02 2.56 16 36 H 0.10 2.44 6.44 -2.38 -0.02 2.42 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.05 1.40 7.22 -2.39 -0.02 1.39 16 40 H 0.02 1.08 8.07 -2.38 -0.02 1.06 16 41 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 42 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 43 H 0.09 3.43 6.70 -2.39 -0.02 3.42 16 44 H 0.13 1.53 5.93 -2.39 -0.01 1.51 16 45 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.10 2.25 7.69 -2.39 -0.02 2.23 16 Total: -1.00 -83.67 383.64 3.67 -80.00 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.95 Total: 17.15 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 6.24 Total: 17.22 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.31 Total: -105.69 kcal Atomic # 8 Polarization: -56.17 SS G_CDS: -0.24 Total: -56.41 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -83.67 3.67 -80.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353435715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.923 kcal (2) G-P(sol) polarization free energy of solvation -83.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds