Wall clock time and date at job start Fri Apr 10 2020 18:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99665 * 2 1 4 4 O 1.42897 * 109.47062 * 134.99891 * 3 2 1 5 5 C 1.42906 * 114.00168 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47045 * 180.02562 * 5 4 3 7 7 O 1.21274 * 120.00413 * 0.27121 * 6 5 4 8 8 N 1.34784 * 119.99635 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 0.02562 * 8 6 5 10 10 C 1.50697 * 109.47293 * 90.00297 * 9 8 6 11 11 H 1.07997 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00091 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00242 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99879 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46938 * 90.00404 * 14 12 10 16 16 H 1.48499 * 109.47143 * 210.00686 * 14 12 10 17 17 H 1.48496 * 109.47136 * 330.00589 * 14 12 10 18 18 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 19 19 C 1.52999 * 109.47276 * 89.99654 * 18 8 6 20 20 N 1.46893 * 109.47361 * 180.02562 * 19 18 8 21 21 C 1.47013 * 110.99929 * 293.63619 * 20 19 18 22 22 C 1.53109 * 109.25866 * 177.60627 * 21 20 19 23 23 O 1.43011 * 109.25677 * 56.85034 * 22 21 20 24 24 C 1.43014 * 113.73945 * 301.32986 * 23 22 21 25 25 C 1.47012 * 111.00146 * 170.00252 * 20 19 18 26 26 H 1.08002 * 119.99673 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00518 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00518 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47279 * 14.99989 * 3 2 1 30 30 H 1.08995 * 109.46956 * 254.99725 * 3 2 1 31 31 H 1.09005 * 109.47002 * 59.99866 * 5 4 3 32 32 H 1.09002 * 109.46834 * 300.00233 * 5 4 3 33 33 H 1.08997 * 109.46865 * 210.00034 * 9 8 6 34 34 H 1.08998 * 109.47058 * 329.99547 * 9 8 6 35 35 H 0.96997 * 120.00230 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47416 * 209.99869 * 18 8 6 37 37 H 1.09008 * 109.47058 * 330.00468 * 18 8 6 38 38 H 1.08998 * 109.47074 * 300.00425 * 19 18 8 39 39 H 1.09007 * 109.46853 * 59.99785 * 19 18 8 40 40 H 1.08992 * 109.51039 * 297.54327 * 21 20 19 41 41 H 1.09006 * 109.50759 * 57.67723 * 21 20 19 42 42 H 1.08999 * 109.50103 * 296.91687 * 22 21 20 43 43 H 1.08994 * 109.53824 * 176.80489 * 22 21 20 44 44 H 1.08999 * 109.51245 * 298.73756 * 24 23 22 45 45 H 1.09006 * 109.54530 * 178.62599 * 24 23 22 46 46 H 1.09004 * 109.50986 * 302.32707 * 25 20 19 47 47 H 1.09010 * 109.50745 * 62.41541 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4351 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0930 1.2086 2.6636 8 7 5.8597 3.2600 2.3088 9 6 5.7438 4.5243 1.5777 10 6 4.8346 5.4595 2.3325 11 1 4.3875 5.1436 3.2635 12 6 4.5727 6.7180 1.8341 13 7 3.7789 7.5340 2.4925 14 14 5.3455 7.2642 0.2235 15 1 4.4487 6.9024 -0.9035 16 1 5.5456 8.7355 0.2443 17 1 6.6564 6.5887 0.0493 18 6 6.9154 3.0868 3.3097 19 6 8.1662 2.5164 2.6382 20 7 9.2245 2.3421 3.6419 21 6 9.6763 3.6408 4.1621 22 6 10.7338 3.4108 5.2451 23 8 11.8093 2.6427 4.6986 24 6 11.4051 1.3714 4.1832 25 6 10.3543 1.5807 3.0895 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2688 3.2698 1.3192 32 1 4.3586 2.6397 0.0608 33 1 6.7298 4.9780 1.4779 34 1 5.3292 4.3347 0.5876 35 1 3.5949 8.4195 2.1421 36 1 7.1520 4.0513 3.7589 37 1 6.5731 2.3996 4.0836 38 1 7.9296 1.5519 2.1890 39 1 8.5085 3.2035 1.8642 40 1 10.1075 4.2277 3.3512 41 1 8.8286 4.1766 4.5892 42 1 10.2880 2.8702 6.0800 43 1 11.1131 4.3712 5.5941 44 1 10.9788 0.7714 4.9873 45 1 12.2694 0.8564 3.7638 46 1 10.0016 0.6127 2.7336 47 1 10.7959 2.1343 2.2608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354782339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:55 Heat of formation + Delta-G solvation = -89.802172 kcal Electronic energy + Delta-G solvation = -26569.736318 eV Core-core repulsion = 22753.955183 eV Total energy + Delta-G solvation = -3815.781135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.74979 -39.21562 -37.51371 -36.11997 -34.92440 -33.75432 -32.65004 -31.29840 -30.35341 -28.13000 -27.80463 -25.99372 -24.92844 -24.07421 -22.65995 -21.95940 -20.38048 -20.03370 -18.47311 -17.22586 -16.98991 -16.58735 -16.25549 -16.04378 -15.95881 -15.43608 -15.19572 -15.08023 -14.78814 -14.68499 -14.32113 -13.78553 -13.75352 -13.36860 -13.04010 -12.85053 -12.47498 -12.41028 -12.18828 -12.10627 -11.82816 -11.74028 -11.47922 -11.40446 -11.01222 -10.90828 -10.84227 -10.73302 -10.48222 -10.30270 -9.80746 -9.77317 -9.69683 -9.24763 -9.09615 -8.81932 -8.41563 -7.87313 -6.31124 -4.34100 2.13354 3.07956 3.16140 3.17658 3.22343 3.28464 3.73880 3.89259 4.16573 4.37837 4.80275 4.93069 4.96001 4.98661 5.02196 5.07679 5.14397 5.19899 5.26607 5.37953 5.42348 5.47951 5.49406 5.56090 5.58270 5.59636 5.70791 5.75539 5.80416 5.87131 5.89893 5.92557 6.17127 6.30442 6.34736 6.52032 6.53036 6.63722 6.93207 6.93972 7.05823 7.16866 7.32332 7.38882 7.99627 8.29919 8.73791 8.84603 9.27348 10.81265 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.004097 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.862331 B = 6832.991706 C = 9283.233370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C 0.085 3.915 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.523 3.477 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.207 3.793 10 C -0.546 4.546 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.887 5.887 14 Si 0.869 3.131 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.128 3.872 19 C 0.044 3.956 20 N -0.533 5.533 21 C 0.011 3.989 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 -9.508 -3.159 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.162 4.162 3 C 0.008 3.992 4 O -0.283 6.283 5 C -0.033 4.033 6 C 0.310 3.690 7 O -0.423 6.423 8 N -0.323 5.323 9 C 0.086 3.914 10 C -0.584 4.584 11 H 0.099 0.901 12 C -0.126 4.126 13 N -0.524 5.524 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.189 1.189 18 C 0.004 3.996 19 C -0.085 4.085 20 N -0.258 5.258 21 C -0.117 4.117 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.000 -10.216 -2.347 12.605 hybrid contribution 0.225 1.305 -1.848 2.273 sum 7.224 -8.911 -4.195 12.215 Atomic orbital electron populations 1.23810 0.95557 1.02138 1.00819 1.22751 0.95593 0.98270 0.99537 1.21573 0.89227 0.95904 0.92482 1.87964 1.44174 1.35946 1.60251 1.22304 0.93714 0.88834 0.98484 1.20017 0.82041 0.83403 0.83546 1.90642 1.73104 1.27331 1.51241 1.47772 1.29357 1.14999 1.40168 1.19850 0.98131 0.81398 0.92031 1.21382 1.28895 0.98235 1.09877 0.90146 1.24876 0.94467 0.96225 0.97019 1.69883 1.35530 1.08166 1.38828 0.86961 0.80437 0.78734 0.84311 1.19796 1.20724 1.18944 1.21197 0.85701 1.01652 0.91030 1.22519 0.91744 1.01244 0.93019 1.62118 1.09671 1.17739 1.36305 1.22900 0.99305 0.91061 0.98419 1.22685 0.87373 0.96185 0.95011 1.87955 1.33547 1.30118 1.79159 1.22645 0.97214 0.85612 0.95737 1.22769 0.91987 0.99411 0.96816 0.87977 0.88360 0.86653 0.92407 0.92415 0.88564 0.90911 0.94762 0.95420 0.92233 0.90126 0.89687 0.90431 0.94574 0.93841 0.88740 0.92145 0.88439 0.92211 0.88687 0.89651 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 14.31 29.01 0.42 -1.56 16 2 C -0.14 -1.80 9.89 -36.02 -0.36 -2.15 16 3 C 0.08 1.19 6.35 36.01 0.23 1.42 16 4 O -0.36 -6.69 9.86 -55.14 -0.54 -7.23 16 5 C 0.05 0.85 4.97 36.00 0.18 1.02 16 6 C 0.52 10.88 7.75 -10.98 -0.09 10.80 16 7 O -0.55 -12.71 16.08 -14.35 -0.23 -12.94 16 8 N -0.59 -11.80 2.46 -175.06 -0.43 -12.23 16 9 C 0.21 4.37 4.03 -5.20 -0.02 4.34 16 10 C -0.55 -13.80 9.83 -34.44 -0.34 -14.14 16 11 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 12 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.89 -24.98 13.96 55.43 0.77 -24.21 16 14 Si 0.87 19.00 27.47 -169.99 -4.67 14.33 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 18 C 0.13 2.29 5.34 -4.04 -0.02 2.27 16 19 C 0.04 0.68 5.28 -3.83 -0.02 0.65 16 20 N -0.53 -7.38 4.73 -234.30 -1.11 -8.49 16 21 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 22 C 0.06 0.73 7.01 37.21 0.26 0.99 16 23 O -0.39 -4.89 10.83 -35.23 -0.38 -5.27 16 24 C 0.07 0.69 7.01 37.21 0.26 0.95 16 25 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 26 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.10 0.98 7.90 -52.49 -0.41 0.56 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.84 8.00 -51.93 -0.42 1.42 16 32 H 0.07 1.17 7.40 -51.93 -0.38 0.78 16 33 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 34 H 0.03 0.55 5.87 -51.93 -0.30 0.25 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.08 1.43 6.45 -51.93 -0.33 1.09 16 37 H 0.08 1.63 7.43 -51.92 -0.39 1.24 16 38 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 39 H 0.04 0.56 8.12 -51.92 -0.42 0.14 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 47 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -30.92 382.60 -8.46 -39.39 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.00 Total: 4.02 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 0.36 Total: 6.86 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.76 Total: -44.92 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.16 Total: -25.44 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.67 Total: 14.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.92 -8.46 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354782339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.414 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds