Wall clock time and date at job start Fri Apr 10 2020 18:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99665 * 2 1 4 4 O 1.42897 * 109.47062 * 134.99891 * 3 2 1 5 5 C 1.42906 * 114.00168 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47045 * 180.02562 * 5 4 3 7 7 O 1.21274 * 120.00413 * 0.27121 * 6 5 4 8 8 N 1.34784 * 119.99635 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 0.02562 * 8 6 5 10 10 C 1.50697 * 109.47293 * 90.00297 * 9 8 6 11 11 H 1.07997 * 120.00010 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00091 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00242 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99879 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46938 * 90.00404 * 14 12 10 16 16 H 1.48499 * 109.47143 * 210.00686 * 14 12 10 17 17 H 1.48496 * 109.47136 * 330.00589 * 14 12 10 18 18 C 1.46499 * 119.99971 * 179.97438 * 8 6 5 19 19 C 1.52999 * 109.47276 * 89.99654 * 18 8 6 20 20 N 1.46893 * 109.47361 * 180.02562 * 19 18 8 21 21 C 1.47013 * 110.99929 * 293.63619 * 20 19 18 22 22 C 1.53109 * 109.25866 * 177.60627 * 21 20 19 23 23 O 1.43011 * 109.25677 * 56.85034 * 22 21 20 24 24 C 1.43014 * 113.73945 * 301.32986 * 23 22 21 25 25 C 1.47012 * 111.00146 * 170.00252 * 20 19 18 26 26 H 1.08002 * 119.99673 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00518 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00518 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47279 * 14.99989 * 3 2 1 30 30 H 1.08995 * 109.46956 * 254.99725 * 3 2 1 31 31 H 1.09005 * 109.47002 * 59.99866 * 5 4 3 32 32 H 1.09002 * 109.46834 * 300.00233 * 5 4 3 33 33 H 1.08997 * 109.46865 * 210.00034 * 9 8 6 34 34 H 1.08998 * 109.47058 * 329.99547 * 9 8 6 35 35 H 0.96997 * 120.00230 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47416 * 209.99869 * 18 8 6 37 37 H 1.09008 * 109.47058 * 330.00468 * 18 8 6 38 38 H 1.08998 * 109.47074 * 300.00425 * 19 18 8 39 39 H 1.09007 * 109.46853 * 59.99785 * 19 18 8 40 40 H 1.08992 * 109.51039 * 297.54327 * 21 20 19 41 41 H 1.09006 * 109.50759 * 57.67723 * 21 20 19 42 42 H 1.08999 * 109.50103 * 296.91687 * 22 21 20 43 43 H 1.08994 * 109.53824 * 176.80489 * 22 21 20 44 44 H 1.08999 * 109.51245 * 298.73756 * 24 23 22 45 45 H 1.09006 * 109.54530 * 178.62599 * 24 23 22 46 46 H 1.09004 * 109.50986 * 302.32707 * 25 20 19 47 47 H 1.09010 * 109.50745 * 62.41541 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4351 1.0321 6 6 4.9945 2.2566 2.0613 7 8 5.0930 1.2086 2.6636 8 7 5.8597 3.2600 2.3088 9 6 5.7438 4.5243 1.5777 10 6 4.8346 5.4595 2.3325 11 1 4.3875 5.1436 3.2635 12 6 4.5727 6.7180 1.8341 13 7 3.7789 7.5340 2.4925 14 14 5.3455 7.2642 0.2235 15 1 4.4487 6.9024 -0.9035 16 1 5.5456 8.7355 0.2443 17 1 6.6564 6.5887 0.0493 18 6 6.9154 3.0868 3.3097 19 6 8.1662 2.5164 2.6382 20 7 9.2245 2.3421 3.6419 21 6 9.6763 3.6408 4.1621 22 6 10.7338 3.4108 5.2451 23 8 11.8093 2.6427 4.6986 24 6 11.4051 1.3714 4.1832 25 6 10.3543 1.5807 3.0895 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2688 3.2698 1.3192 32 1 4.3586 2.6397 0.0608 33 1 6.7298 4.9780 1.4779 34 1 5.3292 4.3347 0.5876 35 1 3.5949 8.4195 2.1421 36 1 7.1520 4.0513 3.7589 37 1 6.5731 2.3996 4.0836 38 1 7.9296 1.5519 2.1890 39 1 8.5085 3.2035 1.8642 40 1 10.1075 4.2277 3.3512 41 1 8.8286 4.1766 4.5892 42 1 10.2880 2.8702 6.0800 43 1 11.1131 4.3712 5.5941 44 1 10.9788 0.7714 4.9873 45 1 12.2694 0.8564 3.7638 46 1 10.0016 0.6127 2.7336 47 1 10.7959 2.1343 2.2608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354782339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:54 Heat of formation + Delta-G solvation = -110.769042 kcal Electronic energy + Delta-G solvation = -26570.645510 eV Core-core repulsion = 22753.955183 eV Total energy + Delta-G solvation = -3816.690327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12323 -40.42449 -38.82374 -37.40858 -36.43737 -34.77255 -34.56099 -32.26134 -31.71129 -29.82648 -29.14155 -27.13982 -26.14131 -25.03427 -24.50391 -23.23750 -21.38187 -21.03336 -20.02777 -19.12714 -18.41727 -17.85732 -17.52315 -17.27894 -17.09437 -16.79067 -16.26763 -16.24105 -16.04302 -15.97471 -15.67413 -15.13659 -14.99729 -14.66930 -14.51890 -14.22846 -13.98632 -13.69649 -13.57720 -13.23148 -13.17606 -13.04125 -12.87791 -12.50979 -12.46502 -12.32457 -12.12313 -11.90695 -11.85001 -11.72186 -11.47257 -11.00080 -10.83376 -10.76056 -10.69255 -10.26426 -9.62730 -9.41539 -8.31280 -6.40265 1.19318 1.39214 1.41576 1.50291 1.58384 1.87370 2.32823 2.70786 2.93535 3.02391 3.07305 3.62015 3.82050 3.91573 3.97446 4.06342 4.09440 4.10976 4.18773 4.20791 4.30627 4.35201 4.37498 4.42883 4.43302 4.57308 4.62029 4.63900 4.71330 4.73489 4.77484 4.81090 4.89582 4.95937 4.97610 5.01064 5.39861 5.53756 5.64103 5.71549 5.85790 5.91304 6.08414 6.14228 6.15848 6.50756 6.66698 7.16694 7.28229 8.84895 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.004097 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.862331 B = 6832.991706 C = 9283.233370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.172 4.172 3 C 0.078 3.922 4 O -0.390 6.390 5 C 0.052 3.948 6 C 0.515 3.485 7 O -0.576 6.576 8 N -0.591 5.591 9 C 0.215 3.785 10 C -0.545 4.545 11 H 0.030 0.970 12 C 0.023 3.977 13 N -0.940 5.940 14 Si 0.938 3.062 15 H -0.258 1.258 16 H -0.287 1.287 17 H -0.239 1.239 18 C 0.129 3.871 19 C 0.060 3.940 20 N -0.543 5.543 21 C 0.011 3.989 22 C 0.067 3.933 23 O -0.402 6.402 24 C 0.065 3.935 25 C 0.018 3.982 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.269 0.731 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.115 0.885 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.242 -9.968 -5.287 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C 0.002 3.998 4 O -0.309 6.309 5 C -0.027 4.027 6 C 0.303 3.697 7 O -0.456 6.456 8 N -0.323 5.323 9 C 0.094 3.906 10 C -0.584 4.584 11 H 0.048 0.952 12 C -0.176 4.176 13 N -0.579 5.579 14 Si 0.760 3.240 15 H -0.182 1.182 16 H -0.213 1.213 17 H -0.162 1.162 18 C 0.005 3.995 19 C -0.069 4.069 20 N -0.269 5.269 21 C -0.117 4.117 22 C -0.010 4.010 23 O -0.321 6.321 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.141 0.859 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.138 0.862 46 H 0.111 0.889 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.252 -10.698 -4.476 14.233 hybrid contribution -0.264 1.402 -1.070 1.783 sum 7.988 -9.296 -5.546 13.453 Atomic orbital electron populations 1.24070 0.94932 1.03510 0.97799 1.22752 0.96297 0.97582 1.02332 1.21835 0.88451 0.97010 0.92493 1.87940 1.45305 1.35771 1.61877 1.22224 0.92933 0.88646 0.98923 1.20539 0.82385 0.83006 0.83726 1.90615 1.73951 1.28540 1.52531 1.47833 1.29732 1.14502 1.40201 1.19737 0.97749 0.80834 0.92314 1.21482 1.29152 0.99295 1.08425 0.95178 1.25768 0.94793 0.96049 1.01039 1.70048 1.37731 1.08815 1.41314 0.85858 0.80748 0.77957 0.79392 1.18199 1.21288 1.16190 1.21228 0.86367 1.01253 0.90614 1.22237 0.91105 1.00523 0.93042 1.62107 1.10313 1.18495 1.35998 1.22924 0.99489 0.90523 0.98757 1.22742 0.86854 0.97092 0.94330 1.87942 1.34047 1.30850 1.79262 1.22789 0.97844 0.85128 0.95416 1.22856 0.91485 0.99370 0.97270 0.85872 0.87667 0.86719 0.92217 0.90540 0.89780 0.88001 0.93345 0.93077 0.92180 0.90315 0.91520 0.91209 0.94194 0.94133 0.89447 0.92010 0.86662 0.92086 0.86191 0.88887 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 14.31 67.78 0.97 -2.23 16 2 C -0.17 -4.11 9.89 25.65 0.25 -3.86 16 3 C 0.08 2.12 6.35 71.24 0.45 2.57 16 4 O -0.39 -14.20 9.86 -129.94 -1.28 -15.48 16 5 C 0.05 1.88 4.97 71.23 0.35 2.24 16 6 C 0.51 21.60 7.75 87.65 0.68 22.28 16 7 O -0.58 -27.40 16.08 16.02 0.26 -27.14 16 8 N -0.59 -23.61 2.46 -826.17 -2.03 -25.64 16 9 C 0.22 8.79 4.03 85.63 0.35 9.14 16 10 C -0.55 -27.97 9.83 25.60 0.25 -27.71 16 11 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 12 C 0.02 1.19 5.47 84.65 0.46 1.66 16 13 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 14 Si 0.94 37.80 27.47 68.60 1.88 39.69 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.24 -8.58 6.54 99.48 0.65 -7.92 16 18 C 0.13 4.66 5.34 86.38 0.46 5.13 16 19 C 0.06 1.82 5.28 86.30 0.46 2.28 16 20 N -0.54 -14.61 4.73 -895.18 -4.23 -18.84 16 21 C 0.01 0.28 5.44 86.32 0.47 0.75 16 22 C 0.07 1.42 7.01 72.02 0.50 1.93 16 23 O -0.40 -9.35 10.83 -148.98 -1.61 -10.96 16 24 C 0.06 1.25 7.01 72.02 0.50 1.76 16 25 C 0.02 0.40 5.64 86.32 0.49 0.89 16 26 H 0.12 1.84 8.06 -2.91 -0.02 1.81 16 27 H 0.11 1.87 7.90 -2.91 -0.02 1.85 16 28 H 0.11 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.06 1.57 7.86 -2.39 -0.02 1.55 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 3.24 8.00 -2.38 -0.02 3.22 16 32 H 0.10 3.05 7.40 -2.39 -0.02 3.03 16 33 H 0.05 1.88 7.13 -2.39 -0.02 1.86 16 34 H 0.05 1.89 5.87 -2.39 -0.01 1.87 16 35 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.08 2.85 6.45 -2.39 -0.02 2.83 16 37 H 0.07 2.65 7.43 -2.38 -0.02 2.64 16 38 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 39 H 0.04 1.18 8.12 -2.38 -0.02 1.16 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 2.26 6.38 -2.38 -0.02 2.24 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 47 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -68.25 382.60 0.81 -67.44 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.87 Total: 28.03 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 6.65 Total: 16.80 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -5.96 Total: -98.37 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -2.64 Total: -53.59 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.88 Total: 39.69 kcal Total: -68.25 0.81 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354782339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.327 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds