Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99911 * 2 1 4 4 O 1.20819 * 120.00087 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99929 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47245 * 179.97438 * 5 3 2 7 7 C 1.37103 * 120.00446 * 266.07160 * 6 5 3 8 8 H 1.07997 * 119.99940 * 201.32838 * 7 6 5 9 9 C 1.38943 * 119.99585 * 21.32350 * 7 6 5 10 10 N 1.31409 * 120.00705 * 8.13770 * 9 7 6 11 11 Si 1.86803 * 119.99828 * 188.13265 * 9 7 6 12 12 H 1.48500 * 109.47132 * 89.99796 * 11 9 7 13 13 H 1.48498 * 109.47414 * 210.00208 * 11 9 7 14 14 H 1.48506 * 109.47044 * 330.00250 * 11 9 7 15 15 C 1.34779 * 119.99757 * 86.06421 * 6 5 3 16 16 O 1.21298 * 120.00169 * 354.64547 * 15 6 5 17 17 C 1.50702 * 120.00040 * 174.64677 * 15 6 5 18 18 H 1.09006 * 109.47252 * 326.60526 * 17 15 6 19 19 C 1.53001 * 109.47177 * 86.60800 * 17 15 6 20 20 N 1.46898 * 109.47283 * 206.60938 * 17 15 6 21 21 C 1.48002 * 111.00498 * 192.61059 * 20 17 15 22 22 C 1.50437 * 112.83032 * 191.34547 * 21 20 17 23 23 C 1.54314 * 108.50289 * 93.72337 * 22 21 20 24 24 C 1.45874 * 112.18548 * 281.46788 * 23 22 21 25 25 C 1.54308 * 112.18780 * 61.12007 * 24 23 22 26 26 C 1.48009 * 111.00076 * 63.88736 * 20 17 15 27 27 H 1.08992 * 109.47115 * 299.99535 * 1 2 3 28 28 H 1.08998 * 109.47238 * 60.00613 * 1 2 3 29 29 H 1.09009 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47281 * 60.00212 * 5 3 2 31 31 H 1.08998 * 109.47358 * 299.99768 * 5 3 2 32 32 H 0.97000 * 120.00505 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47095 * 299.39056 * 19 17 15 34 34 H 1.09000 * 109.46958 * 179.39126 * 19 17 15 35 35 H 1.08998 * 109.47109 * 59.39407 * 19 17 15 36 36 H 1.09006 * 108.80534 * 312.20833 * 21 20 17 37 37 H 1.08995 * 108.80987 * 70.48140 * 21 20 17 38 38 H 1.08999 * 109.63082 * 334.02335 * 22 21 20 39 39 H 1.08995 * 109.63888 * 213.42982 * 22 21 20 40 40 H 1.08999 * 108.94055 * 160.76572 * 23 22 21 41 41 H 1.09007 * 108.93337 * 42.16002 * 23 22 21 42 42 H 1.08998 * 108.93943 * 300.41986 * 24 23 22 43 43 H 1.09000 * 108.93909 * 181.81514 * 24 23 22 44 44 H 1.09000 * 109.63305 * 161.76318 * 25 24 23 45 45 H 1.09001 * 109.63389 * 41.16098 * 25 24 23 46 46 H 1.08998 * 108.81038 * 205.70362 * 26 20 17 47 47 H 1.08995 * 108.80743 * 323.97649 * 26 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.2536 3.3138 -1.1858 8 1 4.8717 4.1994 -1.1948 9 6 3.7342 2.8170 -2.3749 10 7 2.8562 1.8395 -2.3508 11 14 4.2837 3.5386 -4.0079 12 1 5.4692 2.7945 -4.5040 13 1 3.1800 3.4265 -4.9951 14 1 4.6388 4.9686 -3.8227 15 6 4.0963 3.3489 1.1632 16 8 3.7631 2.8195 2.2024 17 6 4.6386 4.7550 1.1739 18 1 5.3874 4.8616 0.3890 19 6 3.4972 5.7436 0.9277 20 7 5.2540 5.0325 2.4786 21 6 5.5264 6.4783 2.6398 22 6 6.3953 6.7794 3.8304 23 6 7.8644 6.8390 3.3620 24 6 8.4383 5.5106 3.1782 25 6 7.6886 4.6955 2.1035 26 6 6.4229 4.1550 2.7112 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8891 32 1 2.4938 1.4924 -3.1809 33 1 3.0476 5.5446 -0.0451 34 1 3.8875 6.7612 0.9463 35 1 2.7433 5.6295 1.7066 36 1 6.0224 6.8448 1.7410 37 1 4.5784 7.0039 2.7546 38 1 6.2803 5.9926 4.5760 39 1 6.1086 7.7393 4.2598 40 1 8.4512 7.3782 4.1056 41 1 7.9124 7.3791 2.4163 42 1 8.3946 4.9722 4.1249 43 1 9.4815 5.6140 2.8798 44 1 8.3151 3.8694 1.7671 45 1 7.4434 5.3404 1.2596 46 1 6.5692 4.0417 3.7853 47 1 6.2174 3.1747 2.2813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358580139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -101.213999 kcal Electronic energy + Delta-G solvation = -28506.338851 eV Core-core repulsion = 24690.062862 eV Total energy + Delta-G solvation = -3816.275989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.76879 -39.07888 -37.92561 -35.43580 -34.55095 -34.36027 -31.98501 -31.52745 -30.34811 -28.30920 -26.26733 -25.97520 -24.99479 -24.38621 -22.50527 -20.59123 -20.19254 -19.40678 -18.80957 -16.94810 -16.59154 -16.42648 -15.82226 -15.53979 -15.28950 -15.13109 -14.53691 -14.45505 -13.92405 -13.78115 -13.52443 -13.25000 -13.01081 -12.80423 -12.40445 -12.39221 -12.08855 -11.95730 -11.61901 -11.47398 -11.35914 -11.27130 -11.17001 -11.09109 -10.81720 -10.74354 -10.65244 -10.52938 -10.43101 -10.36043 -10.31354 -9.99153 -9.73000 -9.46772 -8.96642 -8.45106 -7.89112 -7.55263 -6.45080 -4.02937 3.07761 3.16271 3.19114 3.58068 3.81423 3.91422 4.11106 4.26108 4.76358 4.77120 4.87865 5.01836 5.08854 5.28833 5.40304 5.57901 5.64730 5.68823 5.75650 5.77839 5.84100 5.84831 5.97185 6.00744 6.03761 6.08823 6.09812 6.14154 6.20029 6.23427 6.26720 6.34540 6.41397 6.43387 6.52623 6.55697 6.61130 6.78595 6.89688 7.31192 7.54492 7.58180 7.66098 7.69223 8.27058 9.00897 9.23906 9.42629 9.82481 10.61588 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.004910 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.999702 B = 5701.039811 C = 6723.643345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.490 3.510 4 O -0.504 6.504 5 C 0.163 3.837 6 N -0.437 5.437 7 C -0.327 4.327 8 H 0.101 0.899 9 C 0.037 3.963 10 N -0.882 5.882 11 Si 0.929 3.071 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.484 3.516 16 O -0.578 6.578 17 C 0.089 3.911 18 H 0.057 0.943 19 C -0.136 4.136 20 N -0.529 5.529 21 C 0.065 3.935 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.149 4.149 26 C 0.066 3.934 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.272 0.728 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 4.162 4.828 9.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.331 3.669 4 O -0.389 6.389 5 C 0.037 3.963 6 N -0.158 5.158 7 C -0.454 4.454 8 H 0.118 0.882 9 C -0.166 4.166 10 N -0.521 5.521 11 Si 0.756 3.244 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.272 3.728 16 O -0.461 6.461 17 C -0.022 4.022 18 H 0.074 0.926 19 C -0.193 4.193 20 N -0.255 5.255 21 C -0.062 4.062 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.189 4.189 26 C -0.062 4.062 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.706 3.993 5.533 8.895 hybrid contribution 0.407 0.581 -1.833 1.965 sum 6.114 4.573 3.701 8.485 Atomic orbital electron populations 1.22894 0.78998 1.01615 1.01498 1.86456 1.21453 1.35757 1.85823 1.23891 0.92245 0.80439 0.70286 1.90493 1.66483 1.36392 1.45492 1.20458 0.87241 0.85478 1.03115 1.43390 1.58544 1.08157 1.05695 1.19616 1.30258 1.12397 0.83157 0.88176 1.25214 0.94811 0.96675 0.99886 1.69611 1.27362 1.26833 1.28328 0.85891 0.78107 0.79275 0.81159 1.20305 1.20898 1.19504 1.20001 0.82128 0.86990 0.83680 1.90549 1.53562 1.69277 1.32699 1.21312 0.96808 0.94554 0.89507 0.92568 1.21725 0.97693 0.96633 1.03299 1.61528 1.28428 1.04226 1.31294 1.21755 0.99107 0.88583 0.96769 1.21433 0.94056 1.01852 0.98447 1.20600 0.96443 0.97547 1.01062 1.20540 0.99003 0.96487 0.99288 1.21961 0.98270 1.00068 0.98561 1.21783 0.87201 0.96439 1.00746 0.93258 0.92783 0.89775 0.85682 0.90815 0.91705 0.90651 0.92950 0.92069 0.95255 0.91090 0.90614 0.91492 0.92552 0.92444 0.92116 0.92753 0.91531 0.91814 0.91338 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.40 10.57 -39.25 -0.41 -8.82 16 3 C 0.49 12.42 5.94 36.01 0.21 12.63 16 4 O -0.50 -14.25 15.72 -18.74 -0.29 -14.55 16 5 C 0.16 3.95 5.13 -5.20 -0.03 3.92 16 6 N -0.44 -10.87 2.15 -116.10 -0.25 -11.12 16 7 C -0.33 -8.02 8.64 -14.93 -0.13 -8.15 16 8 H 0.10 2.32 5.95 -52.49 -0.31 2.01 16 9 C 0.04 0.92 5.17 -17.47 -0.09 0.83 16 10 N -0.88 -22.67 8.55 55.50 0.47 -22.20 16 11 Si 0.93 19.27 29.56 -169.99 -5.02 14.24 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 C 0.48 11.71 5.38 -10.98 -0.06 11.65 16 16 O -0.58 -15.44 15.80 5.54 0.09 -15.35 16 17 C 0.09 1.80 1.68 -68.86 -0.12 1.69 16 18 H 0.06 1.13 5.91 -51.93 -0.31 0.82 16 19 C -0.14 -2.61 8.50 37.16 0.32 -2.29 16 20 N -0.53 -9.47 4.26 -229.30 -0.98 -10.44 16 21 C 0.06 0.94 3.81 -4.50 -0.02 0.92 16 22 C -0.12 -1.43 5.63 -27.32 -0.15 -1.59 16 23 C -0.12 -1.28 5.30 -29.42 -0.16 -1.43 16 24 C -0.12 -1.31 5.30 -29.42 -0.16 -1.46 16 25 C -0.15 -2.04 5.57 -27.32 -0.15 -2.19 16 26 C 0.07 1.09 4.81 -4.49 -0.02 1.07 16 27 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.13 3.01 6.43 -51.93 -0.33 2.68 16 31 H 0.07 1.69 7.63 -51.93 -0.40 1.29 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.07 1.58 7.66 -51.93 -0.40 1.18 16 34 H 0.05 0.83 6.48 -51.93 -0.34 0.49 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.42 6.46 -51.93 -0.34 0.08 16 37 H 0.07 1.02 6.88 -51.93 -0.36 0.66 16 38 H 0.08 0.98 7.08 -51.93 -0.37 0.61 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 42 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.93 6.61 -51.93 -0.34 0.58 16 46 H 0.07 1.08 6.59 -51.93 -0.34 0.74 16 47 H 0.07 1.36 6.45 -51.93 -0.34 1.03 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -30.70 357.92 -7.95 -38.65 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.46 Total: 6.72 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 0.52 Total: 17.47 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.75 Total: -43.76 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.62 Total: -38.71 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.70 -7.95 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358580139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.568 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds