Wall clock time and date at job start Fri Apr 10 2020 18:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 C 1.52990 * 109.47148 * 240.00188 * 2 1 3 5 5 C 1.53001 * 109.47125 * 174.99698 * 4 2 1 6 6 H 1.09002 * 110.27538 * 55.64005 * 5 4 2 7 7 C 1.54954 * 110.30992 * 177.83472 * 5 4 2 8 8 C 1.55306 * 100.93966 * 155.36191 * 7 5 4 9 9 C 1.54378 * 102.25397 * 325.86521 * 8 7 5 10 10 O 1.43238 * 107.58721 * 21.35819 * 9 8 7 11 11 N 1.46496 * 109.46927 * 119.99900 * 2 1 3 12 12 C 1.34778 * 120.00073 * 274.99654 * 11 2 1 13 13 O 1.21345 * 120.00035 * 0.02562 * 12 11 2 14 14 C 1.49450 * 119.99804 * 179.97438 * 12 11 2 15 15 O 1.21345 * 120.00161 * 0.02562 * 14 12 11 16 16 N 1.34778 * 119.99804 * 179.97438 * 14 12 11 17 17 C 1.46506 * 119.99948 * 180.02562 * 16 14 12 18 18 C 1.52996 * 109.46954 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46929 * 180.02562 * 18 17 16 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99302 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00436 * 179.72505 * 20 19 18 23 23 N 1.31515 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47050 * 59.99579 * 24 22 20 26 26 H 1.48496 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46492 * 299.99554 * 24 22 20 28 28 H 1.08995 * 109.47034 * 60.00021 * 1 2 3 29 29 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47282 * 299.99763 * 1 2 3 31 31 H 1.08999 * 109.47171 * 294.99580 * 4 2 1 32 32 H 1.09004 * 109.47303 * 54.99740 * 4 2 1 33 33 H 1.09004 * 111.11969 * 273.27660 * 7 5 4 34 34 H 1.08995 * 111.12554 * 37.44068 * 7 5 4 35 35 H 1.09000 * 110.84124 * 207.67089 * 8 7 5 36 36 H 1.09000 * 111.01829 * 84.13982 * 8 7 5 37 37 H 1.09000 * 109.82946 * 261.84857 * 9 8 7 38 38 H 1.08995 * 109.82946 * 140.87086 * 9 8 7 39 39 H 0.96998 * 119.99776 * 95.00923 * 11 2 1 40 40 H 0.96998 * 120.00150 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.46635 * 60.00517 * 17 16 14 42 42 H 1.08994 * 109.47340 * 300.00676 * 17 16 14 43 43 H 1.09000 * 109.47441 * 60.00504 * 18 17 16 44 44 H 1.09002 * 109.47087 * 299.99950 * 18 17 16 45 45 H 1.09001 * 109.47671 * 60.00109 * 19 18 17 46 46 H 1.08998 * 109.47454 * 300.00107 * 19 18 17 47 47 H 0.97004 * 120.00247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 1 4.0100 -0.9995 -0.3967 7 6 4.1071 -1.3840 -2.5436 8 6 5.4515 -0.6449 -2.7855 9 6 5.1064 0.8040 -2.3795 10 8 3.9596 0.7520 -1.5228 11 7 2.0183 -0.6906 1.1962 12 6 2.1471 -0.0182 2.3571 13 8 1.8581 1.1591 2.4117 14 6 2.6447 -0.7229 3.5775 15 8 2.9332 -1.9003 3.5230 16 7 2.7739 -0.0504 4.7384 17 6 3.2622 -0.7410 5.9346 18 6 3.3138 0.2421 7.1057 19 6 3.8243 -0.4790 8.3548 20 6 3.8757 0.4895 9.5083 21 1 3.5747 1.5167 9.3646 22 6 4.3020 0.0630 10.7481 23 7 4.6634 -1.1892 10.9243 24 14 4.3651 1.2633 12.1781 25 1 3.0049 1.8023 12.4322 26 1 4.8538 0.5617 13.3922 27 1 5.2861 2.3800 11.8466 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -1.7714 -1.2055 32 1 1.6054 -0.2617 -2.1369 33 1 4.2737 -2.4348 -2.3064 34 1 3.4406 -1.2772 -3.3993 35 1 5.7384 -0.6957 -3.8358 36 1 6.2395 -1.0487 -2.1499 37 1 4.8778 1.3925 -3.2680 38 1 5.9465 1.2486 -1.8461 39 1 2.2491 -1.6317 1.1526 40 1 2.5437 0.8909 4.7818 41 1 4.2613 -1.1336 5.7450 42 1 2.5895 -1.5628 6.1798 43 1 2.3146 0.6343 7.2952 44 1 3.9864 1.0641 6.8607 45 1 4.8236 -0.8709 8.1652 46 1 3.1521 -1.3012 8.6000 47 1 4.9630 -1.4894 11.7967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358710406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:45 Heat of formation + Delta-G solvation = -168.643586 kcal Electronic energy + Delta-G solvation = -25541.476476 eV Core-core repulsion = 21722.276520 eV Total energy + Delta-G solvation = -3819.199955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80582 -40.52228 -39.68249 -37.43716 -36.94454 -35.23921 -33.27390 -33.04550 -32.82783 -30.84102 -28.97225 -26.96106 -26.26812 -24.44290 -22.96565 -22.37840 -22.28512 -21.59364 -21.39704 -19.52792 -18.50340 -18.10322 -17.67414 -17.21851 -16.90132 -16.81767 -16.50469 -16.23676 -16.08220 -15.59331 -15.11148 -14.94089 -14.85956 -14.27313 -14.22958 -13.90720 -13.79180 -13.51246 -13.46333 -13.18311 -13.01780 -12.81512 -12.73318 -12.64137 -12.54976 -12.44049 -12.25726 -12.00091 -11.70464 -11.69055 -11.55843 -11.53098 -11.25455 -10.69401 -10.54527 -10.52767 -10.33081 -10.23145 -8.19573 -6.30581 0.31290 1.29599 1.41873 1.44524 1.52415 2.11153 2.41529 2.62513 2.88762 3.14069 3.39164 3.54914 3.60977 3.97036 4.01523 4.07249 4.11427 4.16995 4.17086 4.33696 4.44550 4.51532 4.59301 4.69642 4.78550 4.80947 4.84187 4.85941 4.90560 4.92202 4.99406 5.03763 5.13636 5.14136 5.21491 5.25488 5.28440 5.35762 5.50850 5.70058 5.83893 5.90289 6.11483 6.22715 6.33746 6.71663 6.85922 6.91951 7.38603 8.92096 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.002044 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.540136 B =13692.490044 C =14125.138473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.116 4.116 5 C 0.068 3.932 6 H 0.057 0.943 7 C -0.145 4.145 8 C -0.155 4.155 9 C 0.041 3.959 10 O -0.406 6.406 11 N -0.682 5.682 12 C 0.513 3.487 13 O -0.542 6.542 14 C 0.501 3.499 15 O -0.547 6.547 16 N -0.688 5.688 17 C 0.127 3.873 18 C -0.106 4.106 19 C 0.025 3.975 20 C -0.543 4.543 21 H 0.064 0.936 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.285 1.285 27 H -0.267 1.267 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.418 0.582 40 H 0.418 0.582 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.066 0.934 45 H -0.004 1.004 46 H -0.003 1.003 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 -0.224 -32.908 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.154 4.154 5 C 0.011 3.989 6 H 0.075 0.925 7 C -0.183 4.183 8 C -0.193 4.193 9 C -0.035 4.035 10 O -0.326 6.326 11 N -0.335 5.335 12 C 0.293 3.707 13 O -0.419 6.419 14 C 0.282 3.718 15 O -0.425 6.425 16 N -0.340 5.340 17 C 0.004 3.996 18 C -0.144 4.144 19 C -0.012 4.012 20 C -0.581 4.581 21 H 0.082 0.918 22 C -0.200 4.200 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.210 1.210 27 H -0.192 1.192 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.713 -0.159 -32.708 33.046 hybrid contribution 0.498 0.255 1.208 1.331 sum -4.215 0.096 -31.500 31.781 Atomic orbital electron populations 1.22161 0.93625 1.03278 1.02740 1.21192 0.94933 0.97225 0.83038 0.90840 1.22080 0.93275 1.02918 0.97112 1.23160 0.95606 0.81937 0.98236 0.92492 1.23312 0.96504 1.00657 0.97794 1.23131 0.98274 0.94099 1.03748 1.23259 0.88063 0.98150 0.94056 1.88424 1.47723 1.27043 1.69407 1.45886 1.64220 1.15023 1.08400 1.19964 0.79055 0.86632 0.85001 1.90753 1.49881 1.16168 1.85108 1.20379 0.79450 0.86898 0.85115 1.90734 1.50223 1.16156 1.85396 1.45903 1.63862 1.15342 1.08864 1.21478 0.99334 0.95687 0.83052 1.21643 1.01743 0.97778 0.93248 1.18927 0.94957 0.95205 0.92134 1.21646 1.43906 0.97127 0.95449 0.91824 1.25989 0.94913 0.97030 1.02055 1.70091 1.45463 1.17253 1.24477 0.85489 0.78939 0.78724 0.77824 1.19164 1.21009 1.19175 0.89441 0.90733 0.94095 0.87300 0.87754 0.88506 0.88812 0.88248 0.90776 0.90374 0.92208 0.74466 0.74445 0.91749 0.91634 0.91478 0.91567 0.98537 0.98473 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 71.98 0.68 -1.54 16 2 C 0.14 2.29 2.54 44.99 0.11 2.40 16 3 H 0.07 1.66 7.22 -2.39 -0.02 1.64 16 4 C -0.12 -1.17 4.50 30.59 0.14 -1.04 16 5 C 0.07 0.93 3.35 31.26 0.10 1.03 16 6 H 0.06 0.95 7.68 -2.39 -0.02 0.93 16 7 C -0.15 -1.20 6.57 32.05 0.21 -0.99 16 8 C -0.16 -1.44 7.02 31.85 0.22 -1.22 16 9 C 0.04 0.57 7.79 72.45 0.56 1.13 16 10 O -0.41 -7.84 10.61 -148.98 -1.58 -9.42 16 11 N -0.68 -13.48 4.48 -443.88 -1.99 -15.47 16 12 C 0.51 13.79 7.85 87.27 0.69 14.48 16 13 O -0.54 -16.94 16.14 -3.23 -0.05 -16.99 16 14 C 0.50 15.14 7.89 87.27 0.69 15.83 16 15 O -0.55 -18.46 16.48 -3.23 -0.05 -18.51 16 16 N -0.69 -20.93 5.55 -464.42 -2.58 -23.51 16 17 C 0.13 4.45 5.67 86.38 0.49 4.94 16 18 C -0.11 -4.17 5.27 30.59 0.16 -4.01 16 19 C 0.03 1.32 4.97 29.85 0.15 1.47 16 20 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 21 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 22 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 23 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 24 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.09 0.54 8.06 -2.39 -0.02 0.53 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.42 6.97 8.07 -92.71 -0.75 6.23 16 40 H 0.42 11.64 7.94 -92.71 -0.74 10.90 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.70 390.17 0.44 -71.25 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.52 Total: 20.41 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 4.91 Total: 2.52 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.28 Total: -95.46 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.69 Total: -44.92 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.70 0.44 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358710406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.390 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds