Wall clock time and date at job start Fri Apr 10 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34240 * 117.00293 * 2 1 4 4 O 1.20824 * 119.99147 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00077 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46754 * 179.97438 * 5 3 2 7 7 N 1.46900 * 109.47097 * 180.02562 * 6 5 3 8 8 C 1.46906 * 111.00068 * 293.96044 * 7 6 5 9 9 C 1.53235 * 109.36118 * 172.73181 * 8 7 6 10 10 N 1.47140 * 108.49298 * 53.81956 * 9 8 7 11 11 C 1.34779 * 120.87279 * 128.84875 * 10 9 8 12 12 O 1.21276 * 120.00209 * 184.79300 * 11 10 9 13 13 C 1.50700 * 119.99488 * 4.79733 * 11 10 9 14 14 C 1.53004 * 109.46799 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47088 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00321 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00211 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99525 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47506 * 59.99883 * 19 17 15 21 21 H 1.48506 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47148 * 299.99861 * 19 17 15 23 23 C 1.47087 * 118.24777 * 308.82905 * 10 9 8 24 24 H 1.09000 * 109.62458 * 291.47634 * 23 10 9 25 25 C 1.52995 * 109.62781 * 170.89282 * 23 10 9 26 26 C 1.46896 * 111.00271 * 169.65403 * 7 6 5 27 27 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47226 * 300.00253 * 1 2 3 29 29 H 1.09002 * 109.47133 * 60.00004 * 1 2 3 30 30 H 1.09002 * 109.46891 * 60.00452 * 5 3 2 31 31 H 1.08992 * 109.47267 * 299.99846 * 5 3 2 32 32 H 1.09002 * 109.46793 * 60.00710 * 6 5 3 33 33 H 1.08992 * 109.47367 * 300.00103 * 6 5 3 34 34 H 1.09004 * 109.48670 * 292.70336 * 8 7 6 35 35 H 1.08995 * 109.49183 * 52.75447 * 8 7 6 36 36 H 1.09001 * 109.62900 * 173.54709 * 9 8 7 37 37 H 1.08997 * 109.63310 * 294.13116 * 9 8 7 38 38 H 1.08995 * 109.47163 * 299.99899 * 13 11 10 39 39 H 1.09004 * 109.46879 * 60.00376 * 13 11 10 40 40 H 1.09000 * 109.46865 * 299.99772 * 14 13 11 41 41 H 1.09000 * 109.47049 * 59.99835 * 14 13 11 42 42 H 0.97008 * 119.99511 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.47294 * 306.73580 * 25 23 10 44 44 H 1.09007 * 109.47224 * 66.73701 * 25 23 10 45 45 H 1.08999 * 109.47325 * 186.73462 * 25 23 10 46 46 H 1.09000 * 109.49382 * 307.21993 * 26 7 6 47 47 H 1.09002 * 109.49259 * 67.29622 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0001 2.7421 -0.0002 7 7 5.4671 2.8190 -0.0002 8 6 6.0220 2.2910 1.2533 9 6 7.5487 2.2198 1.1428 10 7 8.0506 3.5459 0.7497 11 6 9.0396 4.1444 1.4428 12 8 9.3818 5.2728 1.1592 13 6 9.7201 3.4113 2.5699 14 6 10.7970 4.3077 3.1845 15 6 11.4780 3.5744 4.3112 16 1 11.1736 2.5694 4.5635 17 6 12.4899 4.1866 5.0202 18 7 12.8609 5.4102 4.7127 19 14 13.3345 3.2773 6.4163 20 1 13.9628 2.0383 5.8917 21 1 14.3788 4.1479 7.0138 22 1 12.3329 2.9232 7.4539 23 6 7.4449 4.2010 -0.4196 24 1 7.7135 3.6559 -1.3246 25 6 7.9443 5.6439 -0.5165 26 6 5.9222 4.1937 -0.2472 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 3.6101 3.2367 0.8894 33 1 3.6108 3.2356 -0.8906 34 1 5.7473 2.9487 2.0781 35 1 5.6235 1.2931 1.4356 36 1 7.9729 1.9381 2.1066 37 1 7.8274 1.4845 0.3880 38 1 8.9845 3.1522 3.3313 39 1 10.1812 2.5014 2.1855 40 1 11.5326 4.5664 2.4228 41 1 10.3364 5.2178 3.5687 42 1 13.5726 5.8410 5.2117 43 1 7.7722 6.1524 0.4321 44 1 9.0109 5.6449 -0.7411 45 1 7.4055 6.1624 -1.3096 46 1 5.4517 4.5753 -1.1534 47 1 5.6490 4.8248 0.5984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360766713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:00 Heat of formation + Delta-G solvation = -131.517022 kcal Electronic energy + Delta-G solvation = -26274.552290 eV Core-core repulsion = 22456.962263 eV Total energy + Delta-G solvation = -3817.590027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64464 -41.36926 -39.22376 -37.61137 -36.06619 -35.64773 -34.20679 -32.51067 -32.42705 -29.54377 -28.58098 -27.58610 -26.66799 -24.60205 -24.20606 -22.84983 -21.85406 -21.31788 -19.79276 -18.80642 -18.59996 -17.70542 -17.65765 -17.40114 -17.06370 -16.68806 -16.41316 -16.21383 -15.75228 -15.67088 -15.18677 -14.82109 -14.72531 -14.28946 -14.17479 -13.97550 -13.65338 -13.49331 -13.42566 -13.18651 -13.14253 -12.83214 -12.75232 -12.63939 -12.48327 -12.38913 -12.27189 -12.08295 -11.88230 -11.82420 -11.72415 -11.57409 -11.53464 -11.27444 -10.54972 -9.99690 -9.73273 -9.31254 -8.16830 -6.30882 1.16278 1.42490 1.47110 1.54716 1.68330 1.74908 2.04263 2.43945 2.85038 3.15929 3.64032 3.69743 3.84342 3.92506 4.04403 4.07499 4.24391 4.28483 4.31379 4.33197 4.35393 4.37948 4.49635 4.52874 4.56811 4.63127 4.70156 4.72440 4.77756 4.82883 4.86230 4.93965 5.00677 5.10969 5.18597 5.38508 5.39538 5.50355 5.64476 5.70559 5.86264 5.88523 5.95589 6.18838 6.49037 6.70637 6.87720 7.34677 7.39584 8.95464 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019648 B = 0.002450 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.731381 B =11427.109569 C =12552.191287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.545 6.545 5 C -0.103 4.103 6 C 0.071 3.929 7 N -0.531 5.531 8 C 0.035 3.965 9 C 0.106 3.894 10 N -0.617 5.617 11 C 0.508 3.492 12 O -0.574 6.574 13 C -0.117 4.117 14 C 0.045 3.955 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.262 1.262 23 C 0.149 3.851 24 H 0.091 0.909 25 C -0.128 4.128 26 C 0.054 3.946 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.101 0.899 40 H -0.019 1.019 41 H -0.021 1.021 42 H 0.262 0.738 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -15.146 -12.119 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.309 3.691 4 O -0.436 6.436 5 C -0.141 4.141 6 C -0.057 4.057 7 N -0.255 5.255 8 C -0.093 4.093 9 C -0.016 4.016 10 N -0.351 5.351 11 C 0.299 3.701 12 O -0.453 6.453 13 C -0.156 4.156 14 C 0.007 3.993 15 C -0.580 4.580 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.187 1.187 23 C 0.046 3.954 24 H 0.108 0.892 25 C -0.185 4.185 26 C -0.074 4.074 27 H 0.148 0.852 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.000 1.000 41 H -0.002 1.002 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -24.102 -14.438 -12.609 30.796 hybrid contribution 0.156 1.056 1.410 1.768 sum -23.947 -13.383 -11.199 29.630 Atomic orbital electron populations 1.23518 0.75023 1.05622 1.02360 1.86508 1.24806 1.32969 1.83684 1.24192 0.92969 0.80979 0.70980 1.90684 1.68318 1.37500 1.47064 1.21372 0.85373 0.98747 1.08568 1.21784 0.86569 0.95339 1.02006 1.61905 1.08150 1.20683 1.34766 1.22695 0.94524 1.02264 0.89838 1.22123 0.93434 0.83100 1.02928 1.48417 1.36247 1.20466 1.30011 1.21311 0.79259 0.86205 0.83359 1.90714 1.65506 1.20443 1.68658 1.21657 0.98657 0.99867 0.95464 1.18664 0.92564 0.93819 0.94224 1.21682 1.18451 1.01558 1.16312 0.90567 1.26156 0.97957 0.95746 1.00725 1.70180 1.30255 1.14890 1.42427 0.85372 0.77994 0.78304 0.78565 1.18579 1.21485 1.18684 1.21379 0.91853 0.93838 0.88361 0.89161 1.21969 1.00712 0.94912 1.00935 1.22486 0.94314 0.88907 1.01736 0.85163 0.92262 0.92034 0.84557 0.85450 0.95110 0.89900 0.95395 0.85881 0.88121 0.88581 0.88336 0.88076 1.00033 1.00228 0.92933 0.94231 0.93443 0.91378 0.87742 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.87 10.57 -51.51 -0.54 -5.41 16 3 C 0.46 7.10 7.96 71.23 0.57 7.67 16 4 O -0.55 -12.12 15.73 21.97 0.35 -11.77 16 5 C -0.10 -1.01 5.75 29.85 0.17 -0.84 16 6 C 0.07 1.02 4.25 86.30 0.37 1.38 16 7 N -0.53 -8.45 4.63 -895.27 -4.14 -12.59 16 8 C 0.04 0.54 5.46 86.38 0.47 1.01 16 9 C 0.11 2.02 6.49 86.34 0.56 2.58 16 10 N -0.62 -17.46 3.01 -793.95 -2.39 -19.85 16 11 C 0.51 19.90 7.60 87.66 0.67 20.56 16 12 O -0.57 -27.60 11.49 -3.02 -0.03 -27.63 16 13 C -0.12 -4.71 4.07 29.85 0.12 -4.59 16 14 C 0.04 2.52 4.26 29.85 0.13 2.64 16 15 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 16 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 17 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 18 N -0.94 -59.82 13.29 21.45 0.28 -59.54 16 19 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.15 3.71 3.65 44.96 0.16 3.88 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 C -0.13 -3.88 7.62 71.98 0.55 -3.33 16 26 C 0.05 1.09 4.91 86.38 0.42 1.51 16 27 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 30 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 0.78 6.41 -2.39 -0.02 0.77 16 32 H 0.03 0.54 8.08 -2.39 -0.02 0.53 16 33 H 0.08 1.26 7.92 -2.39 -0.02 1.24 16 34 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.12 1.07 6.18 -2.39 -0.01 1.05 16 36 H 0.10 1.85 6.05 -2.39 -0.01 1.84 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 3.51 7.46 -2.39 -0.02 3.49 16 39 H 0.10 3.60 8.14 -2.38 -0.02 3.58 16 40 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 41 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 42 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 43 H 0.04 1.44 6.77 -2.39 -0.02 1.43 16 44 H 0.05 1.72 6.79 -2.38 -0.02 1.70 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.10 1.70 7.99 -2.39 -0.02 1.68 16 47 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -81.05 374.00 2.57 -78.48 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.94 Total: 8.74 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.08 Total: 3.29 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -6.25 Total: -91.98 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.23 Total: -44.82 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -81.05 2.57 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360766713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.037 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds