Wall clock time and date at job start Fri Apr 10 2020 18:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99898 * 2 1 4 4 O 1.20828 * 120.00263 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99911 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.47496 * 179.97438 * 5 3 2 7 7 N 1.46892 * 109.47358 * 180.02562 * 6 5 3 8 8 C 1.46894 * 111.00190 * 45.69719 * 7 6 5 9 9 C 1.52786 * 109.42060 * 187.11247 * 8 7 6 10 10 N 1.47082 * 108.76614 * 306.42540 * 9 8 7 11 11 C 1.34777 * 120.87892 * 231.11915 * 10 9 8 12 12 O 1.21283 * 120.00122 * 179.72147 * 11 10 9 13 13 C 1.50701 * 120.00078 * 359.72972 * 11 10 9 14 14 C 1.53004 * 109.47211 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47211 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48504 * 109.47209 * 89.99886 * 19 17 15 21 21 H 1.48501 * 109.47358 * 209.99377 * 19 17 15 22 22 H 1.48496 * 109.47341 * 329.99989 * 19 17 15 23 23 C 1.47076 * 118.23727 * 50.85530 * 10 9 8 24 24 C 1.46906 * 110.99792 * 170.00086 * 7 6 5 25 25 H 1.08998 * 109.49340 * 292.70422 * 24 7 6 26 26 C 1.52999 * 109.51661 * 52.76994 * 24 7 6 27 27 H 1.08993 * 109.47446 * 60.00216 * 1 2 3 28 28 H 1.09004 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46999 * 299.99622 * 1 2 3 30 30 H 1.09000 * 109.47591 * 60.00016 * 5 3 2 31 31 H 1.09000 * 109.47438 * 299.99485 * 5 3 2 32 32 H 1.09000 * 109.46605 * 59.99513 * 6 5 3 33 33 H 1.09000 * 109.46439 * 300.00197 * 6 5 3 34 34 H 1.09002 * 109.49405 * 307.21112 * 8 7 6 35 35 H 1.08998 * 109.49173 * 67.26799 * 8 7 6 36 36 H 1.09004 * 109.55533 * 186.60977 * 9 8 7 37 37 H 1.09003 * 109.46177 * 66.18245 * 9 8 7 38 38 H 1.09000 * 109.47827 * 59.99362 * 13 11 10 39 39 H 1.09007 * 109.47098 * 299.99085 * 13 11 10 40 40 H 1.09000 * 109.47211 * 59.99027 * 14 13 11 41 41 H 1.09007 * 109.46376 * 299.99569 * 14 13 11 42 42 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.63004 * 68.79285 * 23 10 9 44 44 H 1.08999 * 109.62581 * 189.18489 * 23 10 9 45 45 H 1.08992 * 109.47173 * 179.87865 * 26 24 7 46 46 H 1.09002 * 109.47476 * 299.88181 * 26 24 7 47 47 H 1.09006 * 109.47078 * 59.88007 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4671 2.8190 -0.0023 8 6 6.0421 1.8899 -0.9841 9 6 7.5624 1.8684 -0.8333 10 7 8.0654 3.2482 -0.9131 11 6 9.0679 3.5715 -1.7539 12 8 9.4668 4.7155 -1.8104 13 6 9.6929 2.5117 -2.6240 14 6 10.7976 3.1384 -3.4772 15 6 11.4231 2.0784 -4.3469 16 1 11.0685 1.0596 -4.2957 17 6 12.4521 2.4082 -5.2031 18 7 12.8841 3.6488 -5.2651 19 14 13.2327 1.0928 -6.2754 20 1 12.5106 1.0172 -7.5708 21 1 14.6565 1.4354 -6.5217 22 1 13.1516 -0.2201 -5.5862 23 6 7.4413 4.2670 -0.0553 24 6 5.9219 4.1953 -0.2410 25 1 5.6653 4.4920 -1.2579 26 6 5.2411 5.1382 0.7531 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 3.6107 3.2364 0.8889 33 1 3.6101 3.2359 -0.8911 34 1 5.6443 0.8893 -0.8145 35 1 5.7835 2.2184 -1.9907 36 1 8.0000 1.2722 -1.6341 37 1 7.8255 1.4380 0.1330 38 1 8.9322 2.0804 -3.2747 39 1 10.1188 1.7298 -1.9950 40 1 11.5584 3.5700 -2.8268 41 1 10.3714 3.9201 -4.1062 42 1 13.6083 3.8807 -5.8672 43 1 7.6925 4.0716 0.9872 44 1 7.8016 5.2556 -0.3397 45 1 5.5807 6.1588 0.5768 46 1 4.1603 5.0870 0.6208 47 1 5.4972 4.8407 1.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362973288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:15 Heat of formation + Delta-G solvation = -117.736370 kcal Electronic energy + Delta-G solvation = -26253.045094 eV Core-core repulsion = 22436.052642 eV Total energy + Delta-G solvation = -3816.992453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95331 -40.09836 -38.33112 -36.94037 -34.93187 -33.67062 -33.22446 -31.27703 -30.94697 -28.56090 -27.54998 -27.13813 -25.24320 -23.49971 -23.04034 -21.59425 -20.82313 -20.10222 -18.49499 -18.12060 -17.14580 -17.07536 -16.93437 -15.94270 -15.74487 -15.60269 -15.36566 -14.93306 -14.85406 -14.44418 -14.36305 -13.72949 -13.56381 -13.41048 -13.09040 -12.71965 -12.52539 -12.35967 -12.26223 -12.18629 -12.05572 -11.96610 -11.65497 -11.25743 -11.24665 -11.16599 -11.06104 -10.97067 -10.92299 -10.83134 -10.58306 -9.95987 -9.61435 -9.17379 -8.98765 -8.76554 -8.34718 -8.28104 -5.95784 -4.00321 1.78404 2.23183 3.20768 3.21939 3.33173 3.39451 3.41933 3.61147 4.23787 4.45548 4.46835 4.56853 4.65147 4.67838 4.74086 4.75410 4.97681 5.00556 5.08292 5.10726 5.12325 5.24498 5.32651 5.39063 5.41118 5.49303 5.52558 5.60697 5.70109 5.78552 5.87141 5.90127 5.95060 6.07405 6.19242 6.21893 6.64799 6.71234 6.78256 6.91255 7.31158 7.74370 7.76487 7.86482 8.07475 8.38509 8.74338 9.08127 9.63171 11.15150 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.002518 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.315538 B =11118.045227 C =12369.757282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.120 4.120 6 C 0.066 3.934 7 N -0.531 5.531 8 C 0.028 3.972 9 C 0.114 3.886 10 N -0.628 5.628 11 C 0.513 3.487 12 O -0.534 6.534 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.122 3.878 24 C 0.070 3.930 25 H 0.048 0.952 26 C -0.148 4.148 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 -7.173 14.203 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.158 4.158 6 C -0.062 4.062 7 N -0.257 5.257 8 C -0.101 4.101 9 C -0.009 4.009 10 N -0.364 5.364 11 C 0.303 3.697 12 O -0.409 6.409 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.001 4.001 24 C -0.039 4.039 25 H 0.066 0.934 26 C -0.206 4.206 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.634 -6.264 14.525 28.439 hybrid contribution -0.185 -0.505 -1.413 1.512 sum -23.819 -6.770 13.112 28.019 Atomic orbital electron populations 1.23282 0.76133 1.03812 1.02623 1.86511 1.23621 1.33456 1.84082 1.23759 0.92155 0.81334 0.72154 1.90690 1.67364 1.36327 1.45160 1.21588 0.87229 1.00221 1.06771 1.21925 0.87815 0.93625 1.02786 1.62086 1.06798 1.06949 1.49892 1.22643 0.95773 0.97504 0.94153 1.21685 0.92371 0.83651 1.03234 1.48365 1.36813 1.09272 1.41969 1.21602 0.78162 0.90819 0.79096 1.90659 1.61340 1.21903 1.67020 1.21876 1.00463 0.96692 0.97725 1.18909 0.91596 0.95764 0.93806 1.21210 1.17854 0.95070 1.22347 0.92617 1.25029 0.96883 0.95328 0.97183 1.69997 1.27695 1.17363 1.37743 0.86592 0.78593 0.81946 0.80816 1.20699 1.21225 1.19878 1.21610 0.89893 0.93905 0.94739 1.22036 0.95649 0.87655 0.98515 0.93417 1.21871 1.00394 0.98732 0.99559 0.91837 0.87983 0.91833 0.87107 0.86430 0.89218 0.93743 0.88923 0.93960 0.88593 0.90843 0.90388 0.90207 0.95802 0.95910 0.92952 0.91254 0.88762 0.91636 0.92123 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.84 10.57 -39.25 -0.41 -3.25 16 3 C 0.46 4.02 7.96 36.00 0.29 4.31 16 4 O -0.51 -5.84 15.73 -18.75 -0.29 -6.14 16 5 C -0.12 -0.79 5.06 -27.88 -0.14 -0.93 16 6 C 0.07 0.55 3.60 -3.82 -0.01 0.54 16 7 N -0.53 -4.98 4.63 -226.64 -1.05 -6.03 16 8 C 0.03 0.25 5.03 -3.94 -0.02 0.23 16 9 C 0.11 1.26 6.47 -3.83 -0.02 1.23 16 10 N -0.63 -9.34 3.02 -172.74 -0.52 -9.86 16 11 C 0.51 10.09 7.71 -10.98 -0.08 10.00 16 12 O -0.53 -12.78 15.43 5.55 0.09 -12.69 16 13 C -0.13 -2.60 4.01 -27.88 -0.11 -2.71 16 14 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.12 1.60 5.89 -3.60 -0.02 1.58 16 24 C 0.07 0.76 2.56 -67.59 -0.17 0.59 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 C -0.15 -1.30 8.73 37.16 0.32 -0.98 16 27 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.11 0.60 6.18 -51.93 -0.32 0.28 16 31 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.77 6.81 -51.93 -0.35 0.42 16 33 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16 34 H 0.09 0.59 5.73 -51.93 -0.30 0.30 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 1.03 6.02 -51.93 -0.31 0.72 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.44 7.65 -51.93 -0.40 1.04 16 39 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -35.81 375.63 -8.09 -43.91 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.83 Total: -3.82 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 0.56 Total: 2.36 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.83 Total: -42.63 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.62 Total: -22.08 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.81 -8.09 -43.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362973288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.831 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds