Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99677 * 2 1 4 4 O 1.20822 * 120.00168 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99748 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.64394 * 56.84676 * 5 3 2 7 7 C 1.54933 * 110.72514 * 293.49993 * 5 3 2 8 8 N 1.48813 * 103.35205 * 204.33261 * 7 5 3 9 9 C 1.46897 * 111.18681 * 159.50572 * 8 7 5 10 10 C 1.53003 * 109.47175 * 52.66416 * 9 8 7 11 11 C 1.50703 * 109.47070 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00071 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99863 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99930 * 359.97438 * 13 11 10 15 15 C 1.46498 * 119.99718 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47327 * 90.00147 * 15 13 11 17 17 H 1.07999 * 119.99735 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00090 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00054 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99992 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47192 * 90.00218 * 20 18 16 22 22 H 1.48501 * 109.47132 * 210.00246 * 20 18 16 23 23 H 1.48499 * 109.47032 * 329.99838 * 20 18 16 24 24 C 1.47905 * 105.67450 * 38.97719 * 8 7 5 25 25 C 1.53991 * 107.22505 * 334.90354 * 24 8 7 26 26 H 1.09005 * 110.30467 * 120.04331 * 25 24 8 27 27 C 1.52996 * 110.31182 * 242.20979 * 25 24 8 28 28 H 1.09002 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47317 * 299.99743 * 1 2 3 30 30 H 1.09003 * 109.47295 * 60.00230 * 1 2 3 31 31 H 1.08998 * 110.66828 * 322.66438 * 7 5 3 32 32 H 1.09004 * 110.66649 * 85.79359 * 7 5 3 33 33 H 1.09000 * 109.47143 * 172.66998 * 9 8 7 34 34 H 1.09011 * 109.46966 * 292.66611 * 9 8 7 35 35 H 1.09000 * 109.46888 * 299.99991 * 10 9 8 36 36 H 1.08995 * 109.46911 * 59.99977 * 10 9 8 37 37 H 1.08999 * 109.46863 * 90.00202 * 14 13 11 38 38 H 1.09001 * 109.47061 * 209.99691 * 14 13 11 39 39 H 1.09002 * 109.47450 * 330.00263 * 14 13 11 40 40 H 1.09000 * 109.46885 * 209.99673 * 15 13 11 41 41 H 1.09000 * 109.47306 * 329.99711 * 15 13 11 42 42 H 0.97003 * 119.99951 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.91668 * 215.45268 * 24 8 7 44 44 H 1.09002 * 109.91761 * 94.35443 * 24 8 7 45 45 H 1.08998 * 109.46981 * 58.54355 * 27 25 24 46 46 H 1.08994 * 109.47621 * 178.55108 * 27 25 24 47 47 H 1.09006 * 109.46811 * 298.55233 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9789 0.7382 -0.8548 7 6 4.1446 0.7264 1.3280 8 7 5.4666 1.4016 1.4321 9 6 5.9560 1.4000 2.8171 10 6 5.9316 -0.0284 3.3650 11 6 6.4342 -0.0301 4.7858 12 8 6.7776 1.0089 5.3088 13 7 6.5021 -1.1862 5.4751 14 6 6.0868 -2.4411 4.8435 15 6 6.9902 -1.1877 6.8564 16 6 5.8315 -0.9866 7.7989 17 1 4.8317 -0.8690 7.4079 18 6 6.0480 -0.9528 9.1601 19 7 5.0368 -0.7779 9.9826 20 14 7.7773 -1.1570 9.8362 21 1 8.4243 0.1746 9.9510 22 1 7.7129 -1.7933 11.1765 23 1 8.5694 -2.0149 8.9187 24 6 5.2493 2.7823 0.9483 25 6 4.0369 2.7475 -0.0005 26 1 3.2456 3.3976 0.3730 27 6 4.4533 3.1720 -1.4102 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.5073 1.0025 2.1680 32 1 4.2675 -0.3555 1.2764 33 1 6.9767 1.7815 2.8423 34 1 5.3155 2.0350 3.4295 35 1 4.9108 -0.4098 3.3399 36 1 6.5719 -0.6633 2.7527 37 1 6.9426 -2.8986 4.3471 38 1 5.7019 -3.1206 5.6040 39 1 5.3070 -2.2378 4.1095 40 1 7.4713 -2.1420 7.0706 41 1 7.7102 -0.3801 6.9883 42 1 5.1890 -0.7545 10.9403 43 1 6.1314 3.1306 0.4109 44 1 5.0430 3.4427 1.7905 45 1 5.2356 2.5060 -1.7740 46 1 3.5916 3.1179 -2.0754 47 1 4.8295 4.1948 -1.3854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366853256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -114.509031 kcal Electronic energy + Delta-G solvation = -26501.154356 eV Core-core repulsion = 22684.301851 eV Total energy + Delta-G solvation = -3816.852505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07783 -39.48385 -38.71065 -36.75149 -35.00821 -34.20401 -32.55269 -30.92062 -30.46350 -28.36313 -27.83172 -26.12509 -25.65278 -24.49061 -22.59582 -21.66972 -20.78304 -20.01573 -18.36489 -18.04767 -17.19122 -16.97352 -16.78895 -16.37872 -15.78807 -15.38377 -15.07353 -14.87628 -14.36645 -14.17736 -13.96161 -13.73957 -13.45985 -13.21509 -13.06557 -12.80731 -12.51663 -12.43552 -12.33171 -12.28286 -12.00295 -11.88847 -11.63458 -11.38595 -11.27819 -11.13278 -11.06752 -11.01136 -10.89671 -10.80525 -10.71482 -10.51148 -10.14650 -9.55283 -9.02229 -8.61251 -8.59588 -7.70749 -6.09455 -4.08328 1.87440 2.37043 3.28931 3.34128 3.35034 3.36712 3.62485 3.98570 4.09345 4.22647 4.39160 4.51077 4.73861 4.81380 4.88573 4.89785 5.00618 5.03410 5.11608 5.19814 5.22827 5.24342 5.27969 5.37689 5.47562 5.52209 5.55156 5.63153 5.74834 5.75733 5.79391 5.84409 5.96149 6.01924 6.07567 6.10383 6.16598 6.62236 6.70591 6.82839 6.94496 7.33007 7.42874 7.60501 8.24146 8.46240 8.91636 8.97835 9.50859 11.03978 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002828 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.548427 B = 9899.598215 C =10620.122261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.505 6.505 5 C -0.084 4.084 6 H 0.123 0.877 7 C 0.044 3.956 8 N -0.513 5.513 9 C 0.063 3.937 10 C -0.139 4.139 11 C 0.507 3.493 12 O -0.544 6.544 13 N -0.599 5.599 14 C 0.084 3.916 15 C 0.215 3.785 16 C -0.529 4.529 17 H 0.073 0.927 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.038 3.962 25 C -0.093 4.093 26 H 0.095 0.905 27 C -0.140 4.140 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 0.315 -24.876 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.392 6.392 5 C -0.104 4.104 6 H 0.140 0.860 7 C -0.084 4.084 8 N -0.238 5.238 9 C -0.065 4.065 10 C -0.179 4.179 11 C 0.294 3.706 12 O -0.421 6.421 13 N -0.330 5.330 14 C -0.060 4.060 15 C 0.094 3.906 16 C -0.568 4.568 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.090 4.090 25 C -0.112 4.112 26 H 0.113 0.887 27 C -0.198 4.198 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.328 0.891 -24.674 24.913 hybrid contribution -0.201 0.216 1.088 1.128 sum -3.529 1.107 -23.586 23.874 Atomic orbital electron populations 1.23303 0.76153 1.03907 1.02590 1.86525 1.23565 1.33215 1.83863 1.23587 0.91832 0.81395 0.71961 1.90660 1.67009 1.36391 1.45126 1.22089 0.86754 0.99520 1.02049 0.85955 1.23252 0.90298 1.00749 0.94058 1.64950 1.23615 1.13532 1.21658 1.22063 1.02081 0.96060 0.86335 1.21706 1.03013 0.98575 0.94627 1.20292 0.79038 0.83848 0.87468 1.90669 1.49347 1.31234 1.70894 1.47840 1.63781 1.06387 1.15037 1.21665 0.98862 0.87172 0.98337 1.19661 0.96038 0.97220 0.77663 1.21332 0.94690 1.50206 0.90529 0.90861 1.24868 0.96965 0.94461 0.96790 1.69900 1.30688 1.49884 1.03188 0.86829 0.85127 0.79027 0.78581 1.19897 1.21071 1.19036 1.23022 0.97812 0.90260 0.97887 1.22053 0.98018 0.93893 0.97248 0.88695 1.21820 1.01354 1.01755 0.94852 0.87889 0.91737 0.91934 0.92855 0.88298 0.89326 0.93354 0.89420 0.88573 0.93555 0.90628 0.92123 0.95230 0.94552 0.92559 0.89487 0.92914 0.91893 0.92629 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.47 10.57 -39.27 -0.41 -3.89 16 3 C 0.47 5.04 7.26 36.01 0.26 5.30 16 4 O -0.50 -6.66 15.19 -18.75 -0.28 -6.95 16 5 C -0.08 -0.77 3.11 -89.91 -0.28 -1.05 16 6 H 0.12 0.91 7.86 -51.93 -0.41 0.50 16 7 C 0.04 0.45 4.55 -1.74 -0.01 0.44 16 8 N -0.51 -5.65 5.40 -230.20 -1.24 -6.89 16 9 C 0.06 0.85 4.32 -3.82 -0.02 0.84 16 10 C -0.14 -1.94 3.92 -27.88 -0.11 -2.05 16 11 C 0.51 10.14 7.67 -10.99 -0.08 10.05 16 12 O -0.54 -13.23 15.56 5.56 0.09 -13.14 16 13 N -0.60 -12.24 2.86 -182.95 -0.52 -12.76 16 14 C 0.08 1.25 10.24 59.85 0.61 1.86 16 15 C 0.21 5.28 4.23 -5.19 -0.02 5.26 16 16 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 17 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 20 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 21 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 24 C 0.04 0.38 6.35 -2.75 -0.02 0.36 16 25 C -0.09 -0.85 2.99 -89.27 -0.27 -1.12 16 26 H 0.09 1.02 6.85 -51.93 -0.36 0.67 16 27 C -0.14 -1.03 8.89 37.16 0.33 -0.70 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.10 0.88 7.69 -51.93 -0.40 0.48 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.05 0.75 7.77 -51.92 -0.40 0.35 16 35 H 0.09 1.11 6.07 -51.93 -0.32 0.80 16 36 H 0.10 1.14 8.11 -51.93 -0.42 0.72 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 40 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 41 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.09 0.78 7.68 -51.93 -0.40 0.38 16 44 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 45 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -35.62 378.68 -7.49 -43.11 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.95 Total: -1.98 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 1.03 Total: 6.87 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.99 Total: -46.73 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.61 Total: -23.97 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.62 -7.49 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366853256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.397 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds