Wall clock time and date at job start Fri Apr 10 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99677 * 2 1 4 4 O 1.20822 * 120.00168 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99748 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.64394 * 56.84676 * 5 3 2 7 7 C 1.54933 * 110.72514 * 293.49993 * 5 3 2 8 8 N 1.48813 * 103.35205 * 204.33261 * 7 5 3 9 9 C 1.46897 * 111.18681 * 159.50572 * 8 7 5 10 10 C 1.53003 * 109.47175 * 52.66416 * 9 8 7 11 11 C 1.50703 * 109.47070 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00071 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99863 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99930 * 359.97438 * 13 11 10 15 15 C 1.46498 * 119.99718 * 180.02562 * 13 11 10 16 16 C 1.50702 * 109.47327 * 90.00147 * 15 13 11 17 17 H 1.07999 * 119.99735 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00090 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00054 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99992 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47192 * 90.00218 * 20 18 16 22 22 H 1.48501 * 109.47132 * 210.00246 * 20 18 16 23 23 H 1.48499 * 109.47032 * 329.99838 * 20 18 16 24 24 C 1.47905 * 105.67450 * 38.97719 * 8 7 5 25 25 C 1.53991 * 107.22505 * 334.90354 * 24 8 7 26 26 H 1.09005 * 110.30467 * 120.04331 * 25 24 8 27 27 C 1.52996 * 110.31182 * 242.20979 * 25 24 8 28 28 H 1.09002 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47317 * 299.99743 * 1 2 3 30 30 H 1.09003 * 109.47295 * 60.00230 * 1 2 3 31 31 H 1.08998 * 110.66828 * 322.66438 * 7 5 3 32 32 H 1.09004 * 110.66649 * 85.79359 * 7 5 3 33 33 H 1.09000 * 109.47143 * 172.66998 * 9 8 7 34 34 H 1.09011 * 109.46966 * 292.66611 * 9 8 7 35 35 H 1.09000 * 109.46888 * 299.99991 * 10 9 8 36 36 H 1.08995 * 109.46911 * 59.99977 * 10 9 8 37 37 H 1.08999 * 109.46863 * 90.00202 * 14 13 11 38 38 H 1.09001 * 109.47061 * 209.99691 * 14 13 11 39 39 H 1.09002 * 109.47450 * 330.00263 * 14 13 11 40 40 H 1.09000 * 109.46885 * 209.99673 * 15 13 11 41 41 H 1.09000 * 109.47306 * 329.99711 * 15 13 11 42 42 H 0.97003 * 119.99951 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.91668 * 215.45268 * 24 8 7 44 44 H 1.09002 * 109.91761 * 94.35443 * 24 8 7 45 45 H 1.08998 * 109.46981 * 58.54355 * 27 25 24 46 46 H 1.08994 * 109.47621 * 178.55108 * 27 25 24 47 47 H 1.09006 * 109.46811 * 298.55233 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9789 0.7382 -0.8548 7 6 4.1446 0.7264 1.3280 8 7 5.4666 1.4016 1.4321 9 6 5.9560 1.4000 2.8171 10 6 5.9316 -0.0284 3.3650 11 6 6.4342 -0.0301 4.7858 12 8 6.7776 1.0089 5.3088 13 7 6.5021 -1.1862 5.4751 14 6 6.0868 -2.4411 4.8435 15 6 6.9902 -1.1877 6.8564 16 6 5.8315 -0.9866 7.7989 17 1 4.8317 -0.8690 7.4079 18 6 6.0480 -0.9528 9.1601 19 7 5.0368 -0.7779 9.9826 20 14 7.7773 -1.1570 9.8362 21 1 8.4243 0.1746 9.9510 22 1 7.7129 -1.7933 11.1765 23 1 8.5694 -2.0149 8.9187 24 6 5.2493 2.7823 0.9483 25 6 4.0369 2.7475 -0.0005 26 1 3.2456 3.3976 0.3730 27 6 4.4533 3.1720 -1.4102 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.5073 1.0025 2.1680 32 1 4.2675 -0.3555 1.2764 33 1 6.9767 1.7815 2.8423 34 1 5.3155 2.0350 3.4295 35 1 4.9108 -0.4098 3.3399 36 1 6.5719 -0.6633 2.7527 37 1 6.9426 -2.8986 4.3471 38 1 5.7019 -3.1206 5.6040 39 1 5.3070 -2.2378 4.1095 40 1 7.4713 -2.1420 7.0706 41 1 7.7102 -0.3801 6.9883 42 1 5.1890 -0.7545 10.9403 43 1 6.1314 3.1306 0.4109 44 1 5.0430 3.4427 1.7905 45 1 5.2356 2.5060 -1.7740 46 1 3.5916 3.1179 -2.0754 47 1 4.8295 4.1948 -1.3854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366853256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:18 Heat of formation + Delta-G solvation = -140.197131 kcal Electronic energy + Delta-G solvation = -26502.268276 eV Core-core repulsion = 22684.301851 eV Total energy + Delta-G solvation = -3817.966424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90119 -40.82102 -39.78491 -37.59303 -36.66874 -35.22563 -34.67069 -31.83322 -31.57866 -30.06385 -28.50668 -27.38565 -26.63996 -25.62966 -24.14821 -22.67431 -21.82315 -20.80909 -19.85038 -19.16062 -18.86755 -18.16152 -17.73887 -17.44034 -17.16077 -16.82771 -16.41929 -15.82623 -15.70800 -15.39325 -14.94103 -14.77905 -14.49608 -14.34761 -14.18250 -14.02638 -13.80130 -13.67673 -13.62046 -13.33027 -13.15032 -12.96440 -12.90971 -12.77574 -12.51193 -12.32841 -12.10885 -12.01658 -11.89465 -11.84069 -11.81784 -11.75376 -11.65039 -11.58218 -10.84560 -10.66653 -9.56259 -9.38170 -8.35487 -6.40841 1.04656 1.32305 1.36565 1.45148 1.65519 1.80305 2.28816 2.30542 2.95120 2.99398 3.28631 3.42700 3.75827 3.81704 3.96202 4.05933 4.10815 4.16635 4.24221 4.28500 4.31011 4.40195 4.52615 4.57957 4.61797 4.69188 4.69999 4.76075 4.78181 4.82878 4.89366 4.94180 4.96441 5.01744 5.03022 5.05466 5.16568 5.31902 5.37714 5.45080 5.62105 5.74312 5.84290 6.22418 6.60494 6.62905 6.70786 7.20236 7.42284 8.81590 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002828 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.548427 B = 9899.598215 C =10620.122261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.536 6.536 5 C -0.078 4.078 6 H 0.149 0.851 7 C 0.041 3.959 8 N -0.502 5.502 9 C 0.070 3.930 10 C -0.121 4.121 11 C 0.495 3.505 12 O -0.599 6.599 13 N -0.608 5.608 14 C 0.076 3.924 15 C 0.222 3.778 16 C -0.538 4.538 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.275 1.275 23 H -0.236 1.236 24 C 0.036 3.964 25 C -0.091 4.091 26 H 0.073 0.927 27 C -0.135 4.135 28 H 0.132 0.868 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.018 0.982 42 H 0.268 0.732 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -1.733 -27.321 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.426 6.426 5 C -0.097 4.097 6 H 0.167 0.833 7 C -0.087 4.087 8 N -0.225 5.225 9 C -0.059 4.059 10 C -0.160 4.160 11 C 0.284 3.716 12 O -0.481 6.481 13 N -0.339 5.339 14 C -0.066 4.066 15 C 0.099 3.901 16 C -0.576 4.576 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.587 5.587 20 Si 0.773 3.227 21 H -0.203 1.203 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.091 4.091 25 C -0.110 4.110 26 H 0.091 0.909 27 C -0.192 4.192 28 H 0.150 0.850 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.760 -1.215 -27.171 27.255 hybrid contribution -0.849 0.871 1.819 2.188 sum -2.609 -0.344 -25.352 25.489 Atomic orbital electron populations 1.23553 0.74934 1.05785 1.02352 1.86516 1.24831 1.32558 1.83417 1.23900 0.92441 0.81224 0.71024 1.90652 1.67801 1.37438 1.46686 1.22136 0.85711 0.99483 1.02374 0.83346 1.23355 0.89462 1.01933 0.93936 1.65003 1.24094 1.14126 1.19306 1.21890 1.01129 0.95454 0.87397 1.21653 1.04284 0.99410 0.90696 1.21367 0.77883 0.82788 0.89532 1.90638 1.51690 1.33187 1.72581 1.47985 1.63592 1.08675 1.13675 1.22001 1.01344 0.84680 0.98546 1.19334 0.93960 0.97304 0.79457 1.21585 0.94225 1.49995 0.91807 0.95517 1.25895 1.01952 0.93948 0.97117 1.70056 1.33532 1.51368 1.03742 0.85680 0.79189 0.79282 0.78585 1.20276 1.19982 1.15861 1.23092 0.98871 0.89525 0.97656 1.21997 0.96920 0.93886 0.98181 0.90855 1.21787 1.01705 1.02427 0.93293 0.84982 0.92673 0.91560 0.94797 0.86067 0.90179 0.96380 0.87627 0.84933 0.89880 0.91777 0.89050 0.93038 0.96401 0.92263 0.87945 0.94543 0.90482 0.92693 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.39 10.57 -51.44 -0.54 -6.93 16 3 C 0.47 9.62 7.26 71.24 0.52 10.14 16 4 O -0.54 -14.19 15.19 21.98 0.33 -13.86 16 5 C -0.08 -1.26 3.11 -10.34 -0.03 -1.29 16 6 H 0.15 1.67 7.86 -2.39 -0.02 1.65 16 7 C 0.04 0.74 4.55 86.59 0.39 1.14 16 8 N -0.50 -10.13 5.40 -882.22 -4.77 -14.89 16 9 C 0.07 1.87 4.32 86.30 0.37 2.24 16 10 C -0.12 -3.11 3.92 29.85 0.12 -2.99 16 11 C 0.50 19.60 7.67 87.66 0.67 20.27 16 12 O -0.60 -30.04 15.56 -3.03 -0.05 -30.08 16 13 N -0.61 -24.21 2.86 -851.13 -2.43 -26.64 16 14 C 0.08 2.05 10.24 127.77 1.31 3.35 16 15 C 0.22 10.83 4.23 85.63 0.36 11.19 16 16 C -0.54 -31.95 9.94 25.60 0.25 -31.69 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 18 C 0.01 0.52 5.47 84.65 0.46 0.98 16 19 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 20 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 24 C 0.04 0.69 6.35 86.44 0.55 1.24 16 25 C -0.09 -1.57 2.99 -9.92 -0.03 -1.60 16 26 H 0.07 1.61 6.85 -2.38 -0.02 1.60 16 27 C -0.13 -1.70 8.89 71.98 0.64 -1.06 16 28 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.03 0.76 7.90 -2.39 -0.02 0.74 16 32 H 0.12 1.68 7.69 -2.38 -0.02 1.66 16 33 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.02 0.58 7.77 -2.38 -0.02 0.56 16 35 H 0.11 2.39 6.07 -2.39 -0.01 2.37 16 36 H 0.13 2.53 8.11 -2.39 -0.02 2.51 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 39 H 0.09 1.88 6.44 -2.39 -0.02 1.86 16 40 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 41 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 42 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 43 H 0.10 1.64 7.68 -2.39 -0.02 1.62 16 44 H 0.04 0.81 7.57 -2.39 -0.02 0.79 16 45 H 0.08 0.78 8.13 -2.39 -0.02 0.76 16 46 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -82.25 378.68 2.40 -79.85 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.89 Total: 12.70 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.79 Total: 13.46 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -6.90 Total: -101.71 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.26 Total: -50.88 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -82.25 2.40 -79.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366853256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.346 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds