Wall clock time and date at job start Fri Apr 10 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46723 * 2 1 4 4 C 1.46498 * 120.00219 * 90.00247 * 3 2 1 5 5 C 1.50701 * 109.47086 * 89.99372 * 4 3 2 6 6 H 1.07998 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99909 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99749 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46979 * 269.99466 * 9 7 5 11 11 H 1.48498 * 109.47334 * 30.00007 * 9 7 5 12 12 H 1.48504 * 109.47014 * 150.00238 * 9 7 5 13 13 C 1.34778 * 120.00016 * 269.99888 * 3 2 1 14 14 O 1.21283 * 120.00119 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00127 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47246 * 186.04004 * 15 13 3 17 17 C 1.48528 * 111.00015 * 59.24508 * 16 15 13 18 18 C 1.54938 * 103.22751 * 159.72143 * 17 16 15 19 19 H 1.09002 * 110.87675 * 81.01769 * 18 17 16 20 20 C 1.53004 * 110.72594 * 204.22813 * 18 17 16 21 21 C 1.54599 * 102.91980 * 322.58584 * 18 17 16 22 22 H 1.08997 * 110.39124 * 262.99480 * 21 18 17 23 23 C 1.50697 * 110.30613 * 140.87451 * 21 18 17 24 24 O 1.20824 * 120.00205 * 2.82912 * 23 21 18 25 25 O 1.34236 * 119.99673 * 182.82924 * 23 21 18 26 26 C 1.45200 * 116.99902 * 179.97438 * 25 23 21 27 27 C 1.47904 * 111.00107 * 176.64113 * 16 15 13 28 28 H 1.09000 * 109.47190 * 60.00286 * 1 2 3 29 29 H 1.09000 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47259 * 299.99512 * 1 2 3 31 31 H 1.09001 * 109.46700 * 240.00069 * 2 1 3 32 32 H 1.08999 * 109.46747 * 120.00345 * 2 1 3 33 33 H 1.09001 * 109.47232 * 330.00130 * 4 3 2 34 34 H 1.08994 * 109.47332 * 209.99715 * 4 3 2 35 35 H 0.97000 * 119.99834 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46848 * 306.04370 * 15 13 3 37 37 H 1.08996 * 109.46392 * 66.03859 * 15 13 3 38 38 H 1.09004 * 110.67047 * 278.15553 * 17 16 15 39 39 H 1.08997 * 110.66772 * 41.28595 * 17 16 15 40 40 H 1.08994 * 109.47111 * 173.49735 * 20 18 17 41 41 H 1.08999 * 109.46793 * 293.50472 * 20 18 17 42 42 H 1.09000 * 109.46771 * 53.49669 * 20 18 17 43 43 H 1.08997 * 109.47439 * 179.97438 * 26 25 23 44 44 H 1.08997 * 109.47220 * 300.00684 * 26 25 23 45 45 H 1.09002 * 109.46575 * 60.00011 * 26 25 23 46 46 H 1.08994 * 109.91493 * 333.51286 * 27 16 15 47 47 H 1.09001 * 109.91314 * 94.60032 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3428 1.2309 1.0958 7 6 4.1491 2.3897 2.8780 8 7 5.3913 2.1834 3.2573 9 14 3.0123 3.4340 3.9298 10 1 3.1148 4.8545 3.5092 11 1 1.6129 2.9671 3.7602 12 1 3.4058 3.3108 5.3565 13 6 2.2429 2.0165 -1.1672 14 8 2.6475 3.1599 -1.1672 15 6 1.9912 1.3063 -2.4724 16 7 2.4447 2.1514 -3.5851 17 6 3.8928 2.4585 -3.4644 18 6 4.2906 2.8638 -4.9060 19 1 4.0199 3.9004 -5.1068 20 6 5.7868 2.6425 -5.1372 21 6 3.4538 1.9007 -5.7791 22 1 4.0532 1.0406 -6.0773 23 6 2.9302 2.6193 -6.9958 24 8 3.2316 3.7727 -7.1926 25 8 2.1289 1.9779 -7.8610 26 6 1.6618 2.7323 -9.0103 27 6 2.2871 1.4531 -4.8794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 2.0284 34 1 2.0955 3.1410 1.1384 35 1 5.7171 2.5733 4.0836 36 1 2.5392 0.3642 -2.4848 37 1 0.9248 1.1077 -2.5780 38 1 4.0544 3.2862 -2.7737 39 1 4.4480 1.5763 -3.1457 40 1 6.0229 2.8230 -6.1859 41 1 6.3566 3.3306 -4.5128 42 1 6.0467 1.6163 -4.8776 43 1 1.0252 2.0979 -9.6271 44 1 1.0928 3.5975 -8.6702 45 1 2.5172 3.0678 -9.5967 46 1 2.3283 0.3747 -4.7268 47 1 1.3359 1.7273 -5.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366875702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:23 Heat of formation + Delta-G solvation = -108.154930 kcal Electronic energy + Delta-G solvation = -27083.871073 eV Core-core repulsion = 23267.294102 eV Total energy + Delta-G solvation = -3816.576970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97905 -39.59966 -38.24787 -36.59872 -35.36109 -33.46981 -32.64890 -30.74022 -30.32277 -28.67689 -27.69223 -26.78338 -25.37202 -22.99487 -22.83551 -21.81496 -21.07651 -19.93420 -18.34154 -17.77479 -17.22699 -16.92967 -16.60161 -16.44544 -15.87424 -15.11648 -14.88849 -14.76214 -14.22062 -13.76016 -13.73000 -13.55139 -13.47602 -13.27311 -12.84470 -12.66258 -12.53896 -12.48258 -12.26820 -12.17583 -12.03397 -11.90838 -11.54794 -11.31283 -11.19271 -11.03529 -10.98175 -10.82281 -10.72124 -10.63319 -10.49170 -10.47148 -10.14381 -9.54102 -8.96223 -8.58689 -8.32435 -7.70720 -6.08893 -4.07408 2.01967 2.47197 3.29635 3.34542 3.35715 3.37996 3.58192 4.11658 4.24294 4.40002 4.41459 4.62839 4.83695 4.90970 4.94207 4.99323 5.09128 5.16730 5.23717 5.25671 5.30003 5.34627 5.40662 5.46176 5.53635 5.57348 5.65171 5.71018 5.77488 5.80669 5.96397 6.09267 6.13395 6.14378 6.29099 6.38588 6.40301 6.68691 6.88377 6.90422 7.01150 7.36967 7.55620 7.61712 8.26702 8.47167 8.92985 9.01879 9.51885 11.04492 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.003245 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.974944 B = 8626.154783 C = 9409.740913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.266 1.266 12 H -0.285 1.285 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.029 3.971 16 N -0.499 5.499 17 C 0.040 3.960 18 C -0.085 4.085 19 H 0.103 0.897 20 C -0.143 4.143 21 C -0.090 4.090 22 H 0.114 0.886 23 C 0.472 3.528 24 O -0.499 6.499 25 O -0.360 6.360 26 C 0.035 3.965 27 C 0.048 3.952 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -6.377 -20.354 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.191 1.191 12 H -0.211 1.211 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.103 4.103 16 N -0.223 5.223 17 C -0.087 4.087 18 C -0.104 4.104 19 H 0.121 0.879 20 C -0.200 4.200 21 C -0.110 4.110 22 H 0.132 0.868 23 C 0.315 3.685 24 O -0.386 6.386 25 O -0.277 6.277 26 C -0.059 4.059 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.028 -4.887 -20.245 22.320 hybrid contribution -0.101 -0.284 0.485 0.571 sum -8.129 -5.171 -19.760 21.984 Atomic orbital electron populations 1.22236 0.96737 1.01550 1.02311 1.21446 0.93440 0.83938 1.03004 1.47935 1.64469 1.13317 1.06966 1.19630 0.97231 0.93418 0.80036 1.21316 0.95332 1.32855 1.07063 0.90864 1.24853 0.94981 0.95794 0.97369 1.69894 1.15139 1.45063 1.23569 0.86853 0.81472 0.81657 0.79724 1.19888 1.19083 1.21125 1.20079 0.78724 0.87087 0.84694 1.90651 1.44643 1.17756 1.86773 1.22298 1.02317 0.94885 0.90771 1.64625 1.18519 1.39220 0.99906 1.23517 0.86465 1.02300 0.96426 1.22194 0.94514 1.00351 0.93307 0.87917 1.21774 0.94422 1.02092 1.01750 1.22082 0.98265 0.99989 0.90668 0.86767 1.23567 0.75460 0.85878 0.83629 1.90663 1.55639 1.17967 1.74291 1.86509 1.61045 1.45419 1.34727 1.23260 0.99788 0.97074 0.85768 1.22805 0.97633 0.97489 0.90096 0.92935 0.92008 0.92189 0.91584 0.89739 0.95336 0.94571 0.92581 0.92119 0.88218 0.86884 0.93505 0.92552 0.91442 0.92480 0.88145 0.91802 0.91994 0.92258 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.58 5.96 -4.04 -0.02 1.56 16 3 N -0.59 -11.88 2.46 -175.06 -0.43 -12.31 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.23 16 5 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 9 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.51 10.12 7.31 -10.98 -0.08 10.04 16 14 O -0.52 -12.62 13.87 5.55 0.08 -12.54 16 15 C 0.03 0.41 4.03 -4.98 -0.02 0.39 16 16 N -0.50 -7.36 5.11 -231.91 -1.19 -8.54 16 17 C 0.04 0.61 5.03 -1.90 -0.01 0.60 16 18 C -0.08 -1.09 2.99 -88.75 -0.27 -1.36 16 19 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 20 C -0.14 -1.57 9.16 37.16 0.34 -1.23 16 21 C -0.09 -0.98 3.07 -90.42 -0.28 -1.26 16 22 H 0.11 0.98 7.85 -51.93 -0.41 0.57 16 23 C 0.47 5.66 7.05 36.00 0.25 5.91 16 24 O -0.50 -7.37 15.19 -18.75 -0.28 -7.66 16 25 O -0.36 -3.67 10.49 -39.27 -0.41 -4.08 16 26 C 0.03 0.26 10.56 101.05 1.07 1.33 16 27 C 0.05 0.53 6.32 -2.76 -0.02 0.51 16 28 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.82 6.28 -51.93 -0.33 0.49 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.06 0.77 6.91 -51.93 -0.36 0.41 16 37 H 0.10 1.23 7.41 -51.93 -0.38 0.84 16 38 H 0.11 2.15 6.43 -51.93 -0.33 1.82 16 39 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 45 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 46 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 47 H 0.09 0.92 7.64 -51.93 -0.40 0.53 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -35.14 376.55 -7.44 -42.58 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.87 Total: -0.01 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.88 Total: 6.76 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.84 Total: -47.64 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.62 Total: -24.28 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.14 -7.44 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366875702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.573 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds