Wall clock time and date at job start Fri Apr 10 2020 18:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.46723 * 2 1 4 4 C 1.46498 * 120.00219 * 90.00247 * 3 2 1 5 5 C 1.50701 * 109.47086 * 89.99372 * 4 3 2 6 6 H 1.07998 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99909 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99749 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46979 * 269.99466 * 9 7 5 11 11 H 1.48498 * 109.47334 * 30.00007 * 9 7 5 12 12 H 1.48504 * 109.47014 * 150.00238 * 9 7 5 13 13 C 1.34778 * 120.00016 * 269.99888 * 3 2 1 14 14 O 1.21283 * 120.00119 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00127 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47246 * 186.04004 * 15 13 3 17 17 C 1.48528 * 111.00015 * 59.24508 * 16 15 13 18 18 C 1.54938 * 103.22751 * 159.72143 * 17 16 15 19 19 H 1.09002 * 110.87675 * 81.01769 * 18 17 16 20 20 C 1.53004 * 110.72594 * 204.22813 * 18 17 16 21 21 C 1.54599 * 102.91980 * 322.58584 * 18 17 16 22 22 H 1.08997 * 110.39124 * 262.99480 * 21 18 17 23 23 C 1.50697 * 110.30613 * 140.87451 * 21 18 17 24 24 O 1.20824 * 120.00205 * 2.82912 * 23 21 18 25 25 O 1.34236 * 119.99673 * 182.82924 * 23 21 18 26 26 C 1.45200 * 116.99902 * 179.97438 * 25 23 21 27 27 C 1.47904 * 111.00107 * 176.64113 * 16 15 13 28 28 H 1.09000 * 109.47190 * 60.00286 * 1 2 3 29 29 H 1.09000 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47259 * 299.99512 * 1 2 3 31 31 H 1.09001 * 109.46700 * 240.00069 * 2 1 3 32 32 H 1.08999 * 109.46747 * 120.00345 * 2 1 3 33 33 H 1.09001 * 109.47232 * 330.00130 * 4 3 2 34 34 H 1.08994 * 109.47332 * 209.99715 * 4 3 2 35 35 H 0.97000 * 119.99834 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46848 * 306.04370 * 15 13 3 37 37 H 1.08996 * 109.46392 * 66.03859 * 15 13 3 38 38 H 1.09004 * 110.67047 * 278.15553 * 17 16 15 39 39 H 1.08997 * 110.66772 * 41.28595 * 17 16 15 40 40 H 1.08994 * 109.47111 * 173.49735 * 20 18 17 41 41 H 1.08999 * 109.46793 * 293.50472 * 20 18 17 42 42 H 1.09000 * 109.46771 * 53.49669 * 20 18 17 43 43 H 1.08997 * 109.47439 * 179.97438 * 26 25 23 44 44 H 1.08997 * 109.47220 * 300.00684 * 26 25 23 45 45 H 1.09002 * 109.46575 * 60.00011 * 26 25 23 46 46 H 1.08994 * 109.91493 * 333.51286 * 27 16 15 47 47 H 1.09001 * 109.91314 * 94.60032 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3428 1.2309 1.0958 7 6 4.1491 2.3897 2.8780 8 7 5.3913 2.1834 3.2573 9 14 3.0123 3.4340 3.9298 10 1 3.1148 4.8545 3.5092 11 1 1.6129 2.9671 3.7602 12 1 3.4058 3.3108 5.3565 13 6 2.2429 2.0165 -1.1672 14 8 2.6475 3.1599 -1.1672 15 6 1.9912 1.3063 -2.4724 16 7 2.4447 2.1514 -3.5851 17 6 3.8928 2.4585 -3.4644 18 6 4.2906 2.8638 -4.9060 19 1 4.0199 3.9004 -5.1068 20 6 5.7868 2.6425 -5.1372 21 6 3.4538 1.9007 -5.7791 22 1 4.0532 1.0406 -6.0773 23 6 2.9302 2.6193 -6.9958 24 8 3.2316 3.7727 -7.1926 25 8 2.1289 1.9779 -7.8610 26 6 1.6618 2.7323 -9.0103 27 6 2.2871 1.4531 -4.8794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 2.0284 34 1 2.0955 3.1410 1.1384 35 1 5.7171 2.5733 4.0836 36 1 2.5392 0.3642 -2.4848 37 1 0.9248 1.1077 -2.5780 38 1 4.0544 3.2862 -2.7737 39 1 4.4480 1.5763 -3.1457 40 1 6.0229 2.8230 -6.1859 41 1 6.3566 3.3306 -4.5128 42 1 6.0467 1.6163 -4.8776 43 1 1.0252 2.0979 -9.6271 44 1 1.0928 3.5975 -8.6702 45 1 2.5172 3.0678 -9.5967 46 1 2.3283 0.3747 -4.7268 47 1 1.3359 1.7273 -5.3357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366875702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:22 Heat of formation + Delta-G solvation = -133.379128 kcal Electronic energy + Delta-G solvation = -27084.964876 eV Core-core repulsion = 23267.294102 eV Total energy + Delta-G solvation = -3817.670774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92113 -40.93719 -39.41955 -37.51876 -36.91837 -34.94292 -34.39966 -31.93823 -31.56836 -30.11505 -28.60694 -28.05460 -26.46695 -24.48618 -24.10015 -23.04960 -22.19250 -20.87688 -19.82512 -19.10035 -18.68581 -18.21614 -17.79669 -17.48777 -17.20934 -16.54316 -16.22816 -15.91812 -15.72087 -15.06691 -14.76983 -14.68578 -14.54964 -14.44075 -14.27610 -13.97342 -13.80360 -13.53199 -13.43278 -13.34605 -13.20460 -13.16145 -12.85806 -12.63466 -12.53502 -12.35237 -12.11549 -12.02738 -11.86357 -11.82317 -11.78634 -11.73675 -11.69896 -11.45789 -10.83074 -10.51968 -9.43491 -9.35199 -8.34099 -6.38153 1.11668 1.31477 1.35914 1.43705 1.68969 1.84187 2.22198 2.30494 2.96785 3.00756 3.27201 3.46852 3.70730 3.79573 4.07421 4.11673 4.15117 4.25776 4.32318 4.33218 4.34357 4.38623 4.47008 4.47861 4.59825 4.68350 4.71599 4.73978 4.81773 4.82454 4.86299 4.93301 5.02653 5.04641 5.09021 5.19929 5.26975 5.36259 5.41856 5.48211 5.68297 5.77976 5.89941 6.25720 6.62851 6.68801 6.76669 7.23041 7.49659 8.82750 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.003245 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.974944 B = 8626.154783 C = 9409.740913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.239 1.239 12 H -0.274 1.274 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.042 3.958 16 N -0.523 5.523 17 C 0.045 3.955 18 C -0.080 4.080 19 H 0.073 0.927 20 C -0.139 4.139 21 C -0.084 4.084 22 H 0.148 0.852 23 C 0.475 3.525 24 O -0.536 6.536 25 O -0.356 6.356 26 C 0.027 3.973 27 C 0.052 3.948 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 -8.742 -21.938 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.162 1.162 12 H -0.200 1.200 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.089 4.089 16 N -0.248 5.248 17 C -0.083 4.083 18 C -0.100 4.100 19 H 0.092 0.908 20 C -0.196 4.196 21 C -0.103 4.103 22 H 0.165 0.835 23 C 0.319 3.681 24 O -0.425 6.425 25 O -0.272 6.272 26 C -0.066 4.066 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.603 -7.322 -21.859 25.374 hybrid contribution 0.725 0.424 0.888 1.222 sum -9.878 -6.898 -20.971 24.186 Atomic orbital electron populations 1.22161 0.93995 1.03651 1.02062 1.21792 0.95611 0.81043 1.03984 1.48064 1.64458 1.15213 1.05656 1.19244 0.94755 0.92864 0.82698 1.21547 0.97012 1.31877 1.06521 0.95156 1.25809 0.96634 0.97178 0.98997 1.70041 1.17324 1.46676 1.24483 0.85762 0.80577 0.79000 0.77897 1.20498 1.16215 1.19962 1.21162 0.77290 0.86755 0.86380 1.90636 1.46948 1.20462 1.87727 1.22273 1.04580 0.94639 0.87376 1.64530 1.17759 1.40931 1.01580 1.23259 0.87607 1.00565 0.96837 1.22026 0.96118 0.99430 0.92387 0.90837 1.21749 0.92934 1.02767 1.02164 1.22088 0.98272 1.00062 0.89922 0.83473 1.23751 0.75087 0.85331 0.83943 1.90660 1.57074 1.19564 1.75206 1.86497 1.60284 1.45372 1.35086 1.23552 1.00229 0.97663 0.85122 1.22876 0.97783 0.99079 0.87827 0.91865 0.88654 0.93791 0.88378 0.91093 0.93581 0.96808 0.92330 0.89441 0.84949 0.91906 0.93259 0.91461 0.92752 0.90803 0.84711 0.92485 0.91982 0.88797 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.10 2.69 5.96 86.38 0.51 3.21 16 3 N -0.60 -23.85 2.46 -826.16 -2.03 -25.88 16 4 C 0.23 11.10 4.23 85.63 0.36 11.46 16 5 C -0.53 -31.24 9.94 25.60 0.25 -30.98 16 6 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 7 C 0.01 0.70 5.47 84.66 0.46 1.16 16 8 N -0.94 -59.98 13.96 21.45 0.30 -59.68 16 9 Si 0.94 45.08 27.47 68.60 1.88 46.96 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.50 19.76 7.31 87.66 0.64 20.40 16 14 O -0.58 -29.29 13.87 -3.04 -0.04 -29.33 16 15 C 0.04 1.11 4.03 85.56 0.35 1.45 16 16 N -0.52 -14.76 5.11 -887.61 -4.54 -19.29 16 17 C 0.04 1.41 5.03 86.65 0.44 1.85 16 18 C -0.08 -2.08 2.99 -9.59 -0.03 -2.11 16 19 H 0.07 2.34 6.91 -2.39 -0.02 2.32 16 20 C -0.14 -3.00 9.16 71.98 0.66 -2.34 16 21 C -0.08 -1.63 3.07 -10.66 -0.03 -1.67 16 22 H 0.15 1.91 7.85 -2.39 -0.02 1.89 16 23 C 0.47 10.61 7.05 71.23 0.50 11.11 16 24 O -0.54 -15.76 15.19 21.97 0.33 -15.43 16 25 O -0.36 -6.30 10.49 -51.48 -0.54 -6.84 16 26 C 0.03 0.35 10.56 113.37 1.20 1.55 16 27 C 0.05 0.97 6.32 86.44 0.55 1.52 16 28 H 0.06 1.18 7.41 -2.39 -0.02 1.17 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 2.05 6.28 -2.39 -0.01 2.04 16 32 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 33 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 34 H 0.01 0.74 6.85 -2.39 -0.02 0.72 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.09 1.87 6.91 -2.39 -0.02 1.85 16 37 H 0.13 2.66 7.41 -2.39 -0.02 2.64 16 38 H 0.06 2.61 6.43 -2.39 -0.02 2.60 16 39 H 0.05 1.48 7.88 -2.39 -0.02 1.46 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 43 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 45 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 46 H 0.09 1.17 7.68 -2.39 -0.02 1.16 16 47 H 0.09 1.65 7.64 -2.39 -0.02 1.63 16 Total: -1.00 -83.32 376.55 2.86 -80.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.89 Total: 15.00 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.60 Total: 14.02 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -6.27 Total: -104.85 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.25 Total: -51.60 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -83.32 2.86 -80.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366875702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.914 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds