Wall clock time and date at job start Fri Apr 10 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.57497 * 2 1 4 4 C 1.53106 * 109.45629 * 239.78755 * 2 1 3 5 5 O 1.42907 * 109.48612 * 297.61807 * 4 2 1 6 6 C 1.42902 * 114.09874 * 298.88414 * 5 4 2 7 7 C 1.53097 * 109.41474 * 61.15777 * 6 5 4 8 8 C 1.53179 * 109.52005 * 120.15217 * 2 1 3 9 9 H 1.09005 * 109.54126 * 182.88117 * 8 2 1 10 10 C 1.52997 * 109.54595 * 303.05935 * 8 2 1 11 11 N 1.46505 * 109.47212 * 184.82216 * 10 8 2 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.47425 * 125.65009 * 359.69474 * 14 12 11 16 16 C 1.55130 * 104.72119 * 155.81738 * 15 14 12 17 17 C 1.55161 * 101.48570 * 37.29728 * 16 15 14 18 18 O 1.42901 * 110.72071 * 82.69684 * 17 16 15 19 19 C 1.50704 * 110.71544 * 205.96719 * 17 16 15 20 20 H 1.07999 * 120.00451 * 354.97553 * 19 17 16 21 21 C 1.37877 * 119.99608 * 174.97211 * 19 17 16 22 22 N 1.31520 * 120.00159 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00102 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46574 * 60.00534 * 23 21 19 25 25 H 1.48495 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47144 * 300.00540 * 23 21 19 27 27 C 1.47028 * 125.64585 * 180.02562 * 14 12 11 28 28 H 1.08996 * 109.47442 * 299.84750 * 1 2 3 29 29 H 1.08998 * 109.46801 * 59.84946 * 1 2 3 30 30 H 1.08999 * 109.46929 * 179.84378 * 1 2 3 31 31 H 1.09000 * 109.40762 * 177.63254 * 4 2 1 32 32 H 1.09001 * 109.48195 * 57.64131 * 4 2 1 33 33 H 1.09004 * 109.47863 * 301.18080 * 6 5 4 34 34 H 1.08992 * 109.49509 * 181.14655 * 6 5 4 35 35 H 1.08995 * 109.52476 * 182.48688 * 7 6 5 36 36 H 1.09001 * 109.57311 * 62.32666 * 7 6 5 37 37 H 1.09002 * 109.47153 * 64.82208 * 10 8 2 38 38 H 1.09001 * 109.46832 * 304.82399 * 10 8 2 39 39 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 40 40 H 1.08999 * 110.36215 * 274.74430 * 15 14 12 41 41 H 1.08999 * 110.36339 * 37.06751 * 15 14 12 42 42 H 1.08996 * 111.19239 * 279.19274 * 16 15 14 43 43 H 1.09002 * 110.90634 * 155.27258 * 16 15 14 44 44 H 0.96700 * 113.99391 * 185.02267 * 18 17 16 45 45 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.87992 * 300.44032 * 27 14 12 47 47 H 1.09002 * 109.88454 * 61.44710 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0400 -0.7264 -1.2475 5 8 1.6099 -2.0889 -1.2150 6 6 2.0988 -2.8285 -0.0943 7 6 1.5895 -2.1879 1.1995 8 6 2.0418 -0.7252 1.2484 9 1 3.1306 -0.6810 1.2751 10 6 1.4715 -0.0546 2.4998 11 7 2.0514 -0.6751 3.6936 12 6 1.6936 -0.2428 4.9189 13 8 0.8894 0.6618 5.0337 14 7 2.2275 -0.8133 6.0172 15 6 3.2041 -1.9176 6.0233 16 6 3.9424 -1.7834 7.3810 17 6 2.7873 -1.3428 8.3186 18 8 2.0372 -2.4749 8.7632 19 6 3.3213 -0.5612 9.4913 20 1 4.3871 -0.4507 9.6264 21 6 2.4491 0.0129 10.3916 22 7 1.1512 -0.1220 10.2273 23 14 3.1108 0.9812 11.8456 24 1 3.9205 2.1240 11.3519 25 1 1.9771 1.4914 12.6577 26 1 3.9609 0.0975 12.6832 27 6 1.9271 -0.4418 7.4077 28 1 -0.3634 0.5114 0.8913 29 1 -0.3633 0.5162 -0.8886 30 1 -0.3633 -1.0277 -0.0028 31 1 3.1291 -0.6894 -1.2684 32 1 1.6425 -0.2410 -2.1389 33 1 3.1888 -2.8190 -0.1001 34 1 1.7439 -3.8573 -0.1547 35 1 1.9971 -2.7241 2.0565 36 1 0.5007 -2.2334 1.2256 37 1 0.3886 -0.1773 2.5162 38 1 1.7168 1.0073 2.4867 39 1 2.6932 -1.3965 3.6020 40 1 2.6915 -2.8775 5.9608 41 1 3.9067 -1.8072 5.1973 42 1 4.7195 -1.0206 7.3332 43 1 4.3565 -2.7416 7.6949 44 1 1.2582 -2.2484 9.2894 45 1 0.5376 0.2823 10.8606 46 1 2.1814 0.6049 7.5749 47 1 0.8692 -0.6036 7.6144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:16 Heat of formation + Delta-G solvation = -134.517999 kcal Electronic energy + Delta-G solvation = -27157.018714 eV Core-core repulsion = 23339.298555 eV Total energy + Delta-G solvation = -3817.720159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.33792 -39.44993 -37.46442 -35.83594 -34.25450 -33.48610 -32.22320 -31.87423 -30.03345 -28.09684 -27.47207 -26.93213 -24.93512 -23.44144 -23.05826 -22.22135 -19.76994 -19.59070 -19.01018 -17.61303 -17.06526 -16.51341 -16.19860 -16.07135 -15.59463 -15.25166 -15.01635 -14.73423 -14.44260 -14.22259 -13.71632 -13.52194 -13.12179 -12.98321 -12.84384 -12.80350 -12.52066 -12.21079 -12.00249 -11.81029 -11.66556 -11.47743 -11.33250 -11.12610 -11.02160 -10.82116 -10.76152 -10.67871 -10.50482 -10.43709 -10.17464 -9.73818 -9.60063 -9.31085 -8.82130 -8.67087 -8.32147 -7.75271 -6.27181 -4.35989 3.11178 3.23856 3.29014 3.30899 3.59805 3.74818 4.26280 4.32041 4.37907 4.44613 4.53969 4.68604 4.84399 5.00385 5.01327 5.12171 5.23944 5.32105 5.34958 5.36024 5.40012 5.51768 5.56322 5.66204 5.69944 5.77147 5.79831 5.88252 5.90995 5.95433 6.00138 6.11073 6.20715 6.50228 6.71213 6.76334 6.89088 6.90740 6.99268 7.26725 7.32265 7.64334 7.73882 8.04332 8.53122 8.67579 9.13375 9.29763 9.38519 10.80586 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.002778 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.359160 B =10076.053084 C =10491.251911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.066 3.934 5 O -0.381 6.381 6 C 0.061 3.939 7 C -0.153 4.153 8 C -0.097 4.097 9 H 0.077 0.923 10 C 0.146 3.854 11 N -0.752 5.752 12 C 0.714 3.286 13 O -0.597 6.597 14 N -0.631 5.631 15 C 0.104 3.896 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.585 6.585 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.893 5.893 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.123 3.877 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.382 0.618 45 H 0.271 0.729 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.990 -3.631 -20.060 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 H 0.101 0.899 4 C -0.010 4.010 5 O -0.299 6.299 6 C -0.016 4.016 7 C -0.191 4.191 8 C -0.116 4.116 9 H 0.095 0.905 10 C 0.022 3.978 11 N -0.410 5.410 12 C 0.416 3.584 13 O -0.476 6.476 14 N -0.368 5.368 15 C -0.020 4.020 16 C -0.154 4.154 17 C 0.208 3.792 18 O -0.394 6.394 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C 0.001 3.999 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.232 0.768 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.507 -3.263 -20.400 20.811 hybrid contribution 0.334 0.712 1.324 1.540 sum 2.841 -2.550 -19.076 19.454 Atomic orbital electron populations 1.21877 0.94112 1.02716 1.01938 1.21720 0.97562 0.99949 0.94565 0.89871 1.22607 0.98258 0.82407 0.97778 1.87929 1.74175 1.22410 1.45435 1.22585 0.97924 0.95605 0.85463 1.22299 1.02852 0.95534 0.98400 1.21451 1.00573 0.95254 0.94276 0.90479 1.21178 0.98072 0.96659 0.81907 1.45139 1.49751 1.41600 1.04465 1.15519 0.81167 0.82011 0.79672 1.90885 1.38273 1.32879 1.85564 1.47975 1.45396 1.36967 1.06451 1.22269 0.90774 0.90216 0.98724 1.22761 0.97944 1.01720 0.92944 1.19497 0.86457 0.83012 0.90255 1.86104 1.44414 1.34868 1.73991 1.21447 0.93675 1.33431 1.09116 0.91621 1.25077 0.94864 0.95332 0.98001 1.69696 1.01489 1.44749 1.37225 0.86461 0.78511 0.80112 0.81820 1.20043 1.21078 1.20011 1.22853 1.00667 1.00377 0.75987 0.92014 0.92685 0.91738 0.93244 0.88808 0.93238 0.88846 0.90728 0.90324 0.91464 0.91898 0.77480 0.92037 0.92768 0.90498 0.90647 0.76778 0.91944 0.91806 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.36 37.16 0.31 -0.98 16 2 C -0.12 -0.95 2.79 -90.47 -0.25 -1.20 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.07 0.50 6.25 37.21 0.23 0.73 16 5 O -0.38 -3.58 10.19 -35.23 -0.36 -3.94 16 6 C 0.06 0.48 6.84 37.21 0.25 0.73 16 7 C -0.15 -1.31 4.89 -26.59 -0.13 -1.44 16 8 C -0.10 -0.86 2.09 -90.43 -0.19 -1.05 16 9 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 10 C 0.15 1.82 4.48 -4.04 -0.02 1.80 16 11 N -0.75 -10.99 5.28 -65.22 -0.34 -11.33 16 12 C 0.71 14.48 8.49 -86.92 -0.74 13.74 16 13 O -0.60 -14.57 16.67 5.29 0.09 -14.48 16 14 N -0.63 -13.04 3.33 -176.09 -0.59 -13.62 16 15 C 0.10 1.77 6.58 -2.41 -0.02 1.76 16 16 C -0.12 -2.26 6.24 -24.46 -0.15 -2.41 16 17 C 0.25 5.97 0.85 -89.93 -0.08 5.89 16 18 O -0.59 -14.58 13.08 -35.23 -0.46 -15.04 16 19 C -0.54 -14.04 8.12 -34.44 -0.28 -14.32 16 20 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 21 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 22 N -0.89 -23.90 10.99 55.43 0.61 -23.30 16 23 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.12 3.02 5.23 -3.06 -0.02 3.00 16 28 H 0.06 0.59 6.50 -51.93 -0.34 0.25 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.60 6.15 -51.93 -0.32 0.28 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.62 7.29 -51.93 -0.38 0.24 16 36 H 0.08 0.75 6.64 -51.93 -0.34 0.41 16 37 H 0.07 0.92 6.67 -51.93 -0.35 0.57 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 4.73 6.16 -40.82 -0.25 4.48 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.74 7.29 -51.93 -0.38 0.36 16 42 H 0.08 1.45 8.04 -51.93 -0.42 1.04 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.38 9.78 7.47 45.56 0.34 10.12 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 47 H 0.06 1.68 7.93 -51.93 -0.41 1.27 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -30.75 362.32 -8.80 -39.55 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -7.02 Total: 13.22 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.16 Total: 8.00 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.32 Total: -48.25 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.73 Total: -33.46 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.75 -8.80 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.967 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds