Wall clock time and date at job start Fri Apr 10 2020 18:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.57497 * 2 1 4 4 C 1.53106 * 109.45629 * 239.78755 * 2 1 3 5 5 O 1.42907 * 109.48612 * 297.61807 * 4 2 1 6 6 C 1.42902 * 114.09874 * 298.88414 * 5 4 2 7 7 C 1.53097 * 109.41474 * 61.15777 * 6 5 4 8 8 C 1.53179 * 109.52005 * 120.15217 * 2 1 3 9 9 H 1.09005 * 109.54126 * 182.88117 * 8 2 1 10 10 C 1.52997 * 109.54595 * 303.05935 * 8 2 1 11 11 N 1.46505 * 109.47212 * 184.82216 * 10 8 2 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.47425 * 125.65009 * 359.69474 * 14 12 11 16 16 C 1.55130 * 104.72119 * 155.81738 * 15 14 12 17 17 C 1.55161 * 101.48570 * 37.29728 * 16 15 14 18 18 O 1.42901 * 110.72071 * 82.69684 * 17 16 15 19 19 C 1.50704 * 110.71544 * 205.96719 * 17 16 15 20 20 H 1.07999 * 120.00451 * 354.97553 * 19 17 16 21 21 C 1.37877 * 119.99608 * 174.97211 * 19 17 16 22 22 N 1.31520 * 120.00159 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 120.00102 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46574 * 60.00534 * 23 21 19 25 25 H 1.48495 * 109.47015 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47144 * 300.00540 * 23 21 19 27 27 C 1.47028 * 125.64585 * 180.02562 * 14 12 11 28 28 H 1.08996 * 109.47442 * 299.84750 * 1 2 3 29 29 H 1.08998 * 109.46801 * 59.84946 * 1 2 3 30 30 H 1.08999 * 109.46929 * 179.84378 * 1 2 3 31 31 H 1.09000 * 109.40762 * 177.63254 * 4 2 1 32 32 H 1.09001 * 109.48195 * 57.64131 * 4 2 1 33 33 H 1.09004 * 109.47863 * 301.18080 * 6 5 4 34 34 H 1.08992 * 109.49509 * 181.14655 * 6 5 4 35 35 H 1.08995 * 109.52476 * 182.48688 * 7 6 5 36 36 H 1.09001 * 109.57311 * 62.32666 * 7 6 5 37 37 H 1.09002 * 109.47153 * 64.82208 * 10 8 2 38 38 H 1.09001 * 109.46832 * 304.82399 * 10 8 2 39 39 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 40 40 H 1.08999 * 110.36215 * 274.74430 * 15 14 12 41 41 H 1.08999 * 110.36339 * 37.06751 * 15 14 12 42 42 H 1.08996 * 111.19239 * 279.19274 * 16 15 14 43 43 H 1.09002 * 110.90634 * 155.27258 * 16 15 14 44 44 H 0.96700 * 113.99391 * 185.02267 * 18 17 16 45 45 H 0.97001 * 119.99740 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.87992 * 300.44032 * 27 14 12 47 47 H 1.09002 * 109.88454 * 61.44710 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0400 -0.7264 -1.2475 5 8 1.6099 -2.0889 -1.2150 6 6 2.0988 -2.8285 -0.0943 7 6 1.5895 -2.1879 1.1995 8 6 2.0418 -0.7252 1.2484 9 1 3.1306 -0.6810 1.2751 10 6 1.4715 -0.0546 2.4998 11 7 2.0514 -0.6751 3.6936 12 6 1.6936 -0.2428 4.9189 13 8 0.8894 0.6618 5.0337 14 7 2.2275 -0.8133 6.0172 15 6 3.2041 -1.9176 6.0233 16 6 3.9424 -1.7834 7.3810 17 6 2.7873 -1.3428 8.3186 18 8 2.0372 -2.4749 8.7632 19 6 3.3213 -0.5612 9.4913 20 1 4.3871 -0.4507 9.6264 21 6 2.4491 0.0129 10.3916 22 7 1.1512 -0.1220 10.2273 23 14 3.1108 0.9812 11.8456 24 1 3.9205 2.1240 11.3519 25 1 1.9771 1.4914 12.6577 26 1 3.9609 0.0975 12.6832 27 6 1.9271 -0.4418 7.4077 28 1 -0.3634 0.5114 0.8913 29 1 -0.3633 0.5162 -0.8886 30 1 -0.3633 -1.0277 -0.0028 31 1 3.1291 -0.6894 -1.2684 32 1 1.6425 -0.2410 -2.1389 33 1 3.1888 -2.8190 -0.1001 34 1 1.7439 -3.8573 -0.1547 35 1 1.9971 -2.7241 2.0565 36 1 0.5007 -2.2334 1.2256 37 1 0.3886 -0.1773 2.5162 38 1 1.7168 1.0073 2.4867 39 1 2.6932 -1.3965 3.6020 40 1 2.6915 -2.8775 5.9608 41 1 3.9067 -1.8072 5.1973 42 1 4.7195 -1.0206 7.3332 43 1 4.3565 -2.7416 7.6949 44 1 1.2582 -2.2484 9.2894 45 1 0.5376 0.2823 10.8606 46 1 2.1814 0.6049 7.5749 47 1 0.8692 -0.6036 7.6144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592023672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:13 Heat of formation + Delta-G solvation = -157.378805 kcal Electronic energy + Delta-G solvation = -27158.010033 eV Core-core repulsion = 23339.298555 eV Total energy + Delta-G solvation = -3818.711478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.44102 -40.65318 -39.13544 -36.84682 -36.06868 -34.57888 -34.23328 -32.63495 -31.64724 -29.66380 -28.68778 -27.69349 -26.70408 -24.42533 -24.09254 -23.35240 -21.45388 -21.11538 -19.87818 -19.19803 -18.82880 -17.54151 -17.25934 -17.02389 -16.87231 -16.70123 -16.21339 -16.05041 -15.82775 -15.43247 -14.94380 -14.80904 -14.72355 -14.46165 -14.13926 -13.76127 -13.62994 -13.53444 -13.44141 -13.20622 -12.82494 -12.77333 -12.53420 -12.45059 -12.33360 -12.32114 -12.10681 -12.07877 -11.87957 -11.48934 -11.27970 -11.16036 -11.06973 -10.65187 -10.37788 -10.29815 -10.22687 -9.39776 -8.26078 -6.42114 1.42268 1.43037 1.51092 1.66306 2.13237 2.37846 3.00624 3.01470 3.07482 3.60182 3.71425 3.78408 3.79982 4.02755 4.06280 4.17560 4.24204 4.33253 4.38418 4.39189 4.57991 4.58855 4.61711 4.71488 4.73141 4.81035 4.81644 4.84650 4.90339 5.00165 5.05506 5.13095 5.19279 5.19754 5.24660 5.25405 5.36181 5.48935 5.50203 5.51218 5.74521 6.03327 6.17392 6.33439 6.64682 7.05533 7.27203 7.34764 7.55807 8.79756 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.002778 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.359160 B =10076.053084 C =10491.251911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 H 0.092 0.908 4 C 0.066 3.934 5 O -0.400 6.400 6 C 0.061 3.939 7 C -0.152 4.152 8 C -0.086 4.086 9 H 0.095 0.905 10 C 0.146 3.854 11 N -0.726 5.726 12 C 0.708 3.292 13 O -0.647 6.647 14 N -0.636 5.636 15 C 0.108 3.892 16 C -0.110 4.110 17 C 0.233 3.767 18 O -0.586 6.586 19 C -0.558 4.558 20 H 0.068 0.932 21 C 0.024 3.976 22 N -0.916 5.916 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.267 1.267 27 C 0.142 3.858 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.408 0.592 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.027 0.973 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 -4.519 -21.758 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 H 0.111 0.889 4 C -0.010 4.010 5 O -0.319 6.319 6 C -0.015 4.015 7 C -0.189 4.189 8 C -0.105 4.105 9 H 0.113 0.887 10 C 0.022 3.978 11 N -0.384 5.384 12 C 0.410 3.590 13 O -0.529 6.529 14 N -0.372 5.372 15 C -0.014 4.014 16 C -0.148 4.148 17 C 0.193 3.807 18 O -0.394 6.394 19 C -0.596 4.596 20 H 0.086 0.914 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.788 3.212 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.192 1.192 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.246 0.754 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.223 0.777 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.823 -4.202 -22.152 23.057 hybrid contribution -0.411 0.996 1.812 2.108 sum 4.412 -3.206 -20.340 21.058 Atomic orbital electron populations 1.21850 0.94984 1.02017 1.01675 1.21735 0.96798 1.00550 0.94504 0.88934 1.22708 0.99139 0.81584 0.97612 1.87913 1.74715 1.23277 1.45993 1.22659 0.98763 0.95701 0.84398 1.22283 1.02003 0.95314 0.99342 1.21401 1.01314 0.95224 0.92534 0.88715 1.21313 0.97426 0.96588 0.82425 1.44938 1.49155 1.41313 1.02981 1.15776 0.80749 0.81562 0.80900 1.90848 1.40468 1.35149 1.86471 1.47903 1.46288 1.37942 1.05110 1.22454 0.90563 0.89256 0.99130 1.22758 0.96575 1.02599 0.92857 1.19712 0.87676 0.82880 0.90457 1.86093 1.44174 1.35280 1.73857 1.21814 0.93900 1.33855 1.10022 0.91382 1.25837 0.95099 0.96251 1.00467 1.69814 1.02389 1.45406 1.37882 0.85530 0.77882 0.78856 0.78911 1.19794 1.21086 1.19173 1.22331 0.98498 0.98541 0.78810 0.93510 0.91718 0.92648 0.91794 0.87787 0.91704 0.88148 0.90156 0.91845 0.93017 0.92790 0.75448 0.91014 0.87950 0.89799 0.89059 0.77653 0.92148 0.95403 0.95613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.36 71.98 0.60 -1.85 16 2 C -0.12 -1.63 2.79 -10.70 -0.03 -1.66 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.07 0.81 6.25 72.02 0.45 1.26 16 5 O -0.40 -6.56 10.19 -148.98 -1.52 -8.08 16 6 C 0.06 0.79 6.84 72.01 0.49 1.28 16 7 C -0.15 -2.25 4.89 30.69 0.15 -2.10 16 8 C -0.09 -1.33 2.09 -10.67 -0.02 -1.35 16 9 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 10 C 0.15 3.49 4.48 86.38 0.39 3.88 16 11 N -0.73 -20.00 5.28 -478.53 -2.52 -22.52 16 12 C 0.71 28.62 8.49 179.05 1.52 30.14 16 13 O -0.65 -32.57 16.67 -3.98 -0.07 -32.64 16 14 N -0.64 -26.02 3.33 -829.30 -2.76 -28.78 16 15 C 0.11 3.38 6.58 86.93 0.57 3.95 16 16 C -0.11 -4.07 6.24 32.06 0.20 -3.87 16 17 C 0.23 11.25 0.85 -10.35 -0.01 11.24 16 18 O -0.59 -29.49 13.08 -148.98 -1.95 -31.44 16 19 C -0.56 -29.27 8.12 25.60 0.21 -29.06 16 20 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 21 C 0.02 1.29 5.28 84.65 0.45 1.74 16 22 N -0.92 -50.55 10.99 21.45 0.24 -50.31 16 23 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 C 0.14 7.19 5.23 86.73 0.45 7.65 16 28 H 0.05 0.90 6.50 -2.39 -0.02 0.88 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.01 6.15 -2.39 -0.01 1.00 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.09 7.29 -2.39 -0.02 1.08 16 36 H 0.06 1.15 6.64 -2.39 -0.02 1.13 16 37 H 0.05 1.42 6.67 -2.39 -0.02 1.41 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.41 8.46 6.16 -92.71 -0.57 7.89 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.10 2.27 7.29 -2.39 -0.02 2.25 16 42 H 0.08 2.97 8.04 -2.39 -0.02 2.95 16 43 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.37 19.81 7.47 -74.06 -0.55 19.25 16 45 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.03 1.57 7.81 -2.39 -0.02 1.55 16 47 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 Total: -1.00 -69.33 362.32 -1.28 -70.60 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.14 Total: 37.59 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.42 Total: 21.24 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -5.05 Total: -101.61 kcal Atomic # 8 Polarization: -68.63 SS G_CDS: -3.53 Total: -72.16 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.33 -1.28 -70.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.775 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds