Wall clock time and date at job start Fri Apr 10 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.51321 * 2 1 4 4 C 1.53303 * 109.51282 * 239.90094 * 2 1 3 5 5 N 1.47145 * 108.38657 * 187.72557 * 4 2 1 6 6 C 1.34777 * 120.98394 * 230.55596 * 5 4 2 7 7 O 1.21282 * 120.00230 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99733 * 359.97438 * 6 5 4 9 9 N 1.46904 * 109.46950 * 179.97438 * 8 6 5 10 10 C 1.47449 * 110.99790 * 69.87222 * 9 8 6 11 11 C 1.54315 * 107.23125 * 123.25769 * 10 9 8 12 12 C 1.55144 * 103.01879 * 22.28104 * 11 10 9 13 13 O 1.42899 * 110.98841 * 82.44129 * 12 11 10 14 14 C 1.50704 * 110.98810 * 206.21620 * 12 11 10 15 15 H 1.08004 * 119.99478 * 118.54910 * 14 12 11 16 16 C 1.37871 * 120.00171 * 298.54686 * 14 12 11 17 17 N 1.31518 * 120.00066 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00128 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46761 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46980 * 120.00053 * 18 16 14 21 21 H 1.48498 * 109.47095 * 240.00217 * 18 16 14 22 22 C 1.47843 * 110.99943 * 190.71315 * 9 8 6 23 23 C 1.47153 * 118.03775 * 50.53018 * 5 4 2 24 24 C 1.53294 * 108.38820 * 309.47087 * 23 5 4 25 25 H 1.09001 * 109.51208 * 292.32516 * 24 23 5 26 26 C 1.52997 * 109.51669 * 172.22271 * 24 23 5 27 27 O 1.42962 * 109.22256 * 52.29681 * 24 23 5 28 28 H 1.08996 * 109.47090 * 180.09884 * 1 2 3 29 29 H 1.08997 * 109.46627 * 300.10422 * 1 2 3 30 30 H 1.09004 * 109.46851 * 60.10055 * 1 2 3 31 31 H 1.08999 * 109.68154 * 67.99940 * 4 2 1 32 32 H 1.09001 * 109.67812 * 307.44693 * 4 2 1 33 33 H 1.08996 * 109.46455 * 299.99654 * 8 6 5 34 34 H 1.08997 * 109.47120 * 60.00033 * 8 6 5 35 35 H 1.08997 * 109.88157 * 242.66352 * 10 9 8 36 36 H 1.08999 * 109.88959 * 3.68754 * 10 9 8 37 37 H 1.08998 * 110.70303 * 140.66474 * 11 10 9 38 38 H 1.08999 * 110.70614 * 263.72475 * 11 10 9 39 39 H 0.96695 * 114.00494 * 61.45041 * 13 12 11 40 40 H 0.97005 * 119.99826 * 179.97438 * 17 16 14 41 41 H 1.09000 * 110.37413 * 332.46809 * 22 9 8 42 42 H 1.09002 * 110.37057 * 94.80162 * 22 9 8 43 43 H 1.08992 * 109.68565 * 189.74378 * 23 5 4 44 44 H 1.09006 * 109.70824 * 69.20945 * 23 5 4 45 45 H 1.09002 * 109.47153 * 59.99709 * 26 24 23 46 46 H 1.09001 * 109.46832 * 299.99900 * 26 24 23 47 47 H 1.09004 * 109.47261 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2501 5 7 3.5013 -0.8747 -1.1346 6 6 4.3188 -0.5011 -2.1389 7 8 5.5191 -0.6323 -2.0245 8 6 3.7415 0.0796 -3.4041 9 7 4.8303 0.4040 -4.3354 10 6 5.4578 -0.8219 -4.8622 11 6 5.3621 -0.7594 -6.4011 12 6 5.1965 0.7578 -6.6796 13 8 6.4628 1.4201 -6.6756 14 6 4.4722 0.9920 -7.9802 15 1 3.5258 1.5123 -7.9851 16 6 5.0176 0.5420 -9.1638 17 7 6.1698 -0.0921 -9.1578 18 14 4.1193 0.8316 -10.7759 19 1 2.8533 1.5619 -10.5128 20 1 4.9762 1.6377 -11.6821 21 1 3.8147 -0.4741 -11.4143 22 6 4.3326 1.2048 -5.4741 23 6 4.0418 -1.4441 0.1100 24 6 3.4323 -0.6844 1.2938 25 1 3.8040 0.3402 1.2991 26 6 3.8233 -1.3766 2.6011 27 8 2.0085 -0.6763 1.1651 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3632 0.5154 0.8890 30 1 -0.3633 0.5123 -0.8909 31 1 1.8023 -0.1393 -2.1378 32 1 1.5765 -1.7077 -1.3212 33 1 3.0729 -0.6473 -3.8653 34 1 3.1848 0.9861 -3.1667 35 1 6.5034 -0.8638 -4.5570 36 1 4.9279 -1.6989 -4.4906 37 1 6.2756 -1.1380 -6.8597 38 1 4.4949 -1.3160 -6.7562 39 1 7.0745 1.1034 -7.3542 40 1 6.5534 -0.4090 -9.9905 41 1 3.2808 0.9876 -5.6598 42 1 4.4729 2.2682 -5.2802 43 1 5.1261 -1.3351 0.1230 44 1 3.7780 -2.4997 0.1762 45 1 4.9091 -1.3865 2.6964 46 1 3.4497 -2.4006 2.5958 47 1 3.3900 -0.8356 3.4424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:00 Heat of formation + Delta-G solvation = -116.112511 kcal Electronic energy + Delta-G solvation = -27317.558001 eV Core-core repulsion = 23500.635964 eV Total energy + Delta-G solvation = -3816.922037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55022 -38.91746 -37.75028 -34.85887 -34.62095 -34.06839 -32.12412 -30.74618 -30.23788 -28.12392 -27.61984 -26.70629 -25.38415 -23.92393 -22.28279 -21.44090 -20.35576 -19.59975 -19.03263 -17.13329 -17.11920 -16.97582 -16.15496 -15.85447 -15.54564 -14.99002 -14.88073 -14.52487 -14.42528 -13.95795 -13.83421 -13.54508 -13.15928 -12.87958 -12.54696 -12.51189 -12.39461 -12.30045 -12.20385 -12.16930 -11.85823 -11.65650 -11.35260 -11.24269 -11.19781 -11.05582 -10.91776 -10.74269 -10.40422 -10.30256 -10.27817 -9.84701 -9.55691 -9.19217 -8.65076 -8.60180 -8.05360 -7.60380 -6.20706 -4.29428 2.72902 2.76742 3.20320 3.29175 3.29560 3.32584 4.26027 4.29942 4.44740 4.60428 4.63567 4.71757 4.75354 4.89990 4.99639 5.04214 5.07754 5.21127 5.26799 5.35573 5.40088 5.47137 5.50222 5.55845 5.60710 5.68814 5.73408 5.76057 5.86893 5.93110 6.09859 6.18354 6.27881 6.52201 6.68133 6.89276 6.91267 7.09655 7.24568 7.41528 7.50756 7.63233 7.69129 7.82615 8.15939 8.31099 8.72982 9.39452 9.54641 10.86174 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002966 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.403761 B = 9437.765272 C =10119.642176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.079 3.921 5 N -0.627 5.627 6 C 0.519 3.481 7 O -0.511 6.511 8 C 0.034 3.966 9 N -0.510 5.510 10 C 0.055 3.945 11 C -0.146 4.146 12 C 0.253 3.747 13 O -0.578 6.578 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.059 3.941 23 C 0.085 3.915 24 C 0.075 3.925 25 H 0.063 0.937 26 C -0.142 4.142 27 O -0.376 6.376 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.377 0.623 40 H 0.266 0.734 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 -3.027 18.762 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.015 3.985 3 H 0.082 0.918 4 C -0.045 4.045 5 N -0.364 5.364 6 C 0.307 3.693 7 O -0.384 6.384 8 C -0.097 4.097 9 N -0.235 5.235 10 C -0.072 4.072 11 C -0.185 4.185 12 C 0.212 3.788 13 O -0.385 6.385 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.132 4.132 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.068 4.068 23 C -0.038 4.038 24 C 0.017 3.983 25 H 0.081 0.919 26 C -0.200 4.200 27 O -0.296 6.296 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.226 0.774 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.341 -2.659 19.593 21.868 hybrid contribution -0.787 -0.690 -2.016 2.272 sum -10.127 -3.348 17.576 20.559 Atomic orbital electron populations 1.21739 0.92093 1.03297 1.02994 1.22471 0.95531 0.95459 0.85000 0.91789 1.22478 0.80540 1.01982 0.99470 1.48233 1.06624 1.64830 1.16728 1.20874 0.86798 0.77236 0.84431 1.90694 1.14611 1.52818 1.80231 1.22157 0.94752 1.00430 0.92407 1.63395 1.25366 1.18789 1.15932 1.22779 0.99553 0.88970 0.95912 1.23300 1.02242 1.01086 0.91890 1.19505 0.82090 0.86570 0.90608 1.86150 1.27241 1.65480 1.59662 1.21560 1.06807 1.37564 0.91498 0.92052 1.25011 0.94915 0.93858 0.99369 1.69760 1.17692 1.38113 1.27640 0.86425 0.79834 0.77926 0.83105 1.19700 1.20785 1.20954 1.23040 0.96831 0.97639 0.89262 1.22259 1.00980 0.97473 0.83117 1.22475 0.81331 0.99330 0.95200 0.91907 1.21721 1.01726 1.01256 0.95282 1.87943 1.20902 1.77469 1.43248 0.91509 0.91421 0.90546 0.88606 0.90519 0.92259 0.88616 0.91123 0.95217 0.90338 0.92740 0.77383 0.92420 0.93440 0.90874 0.88099 0.91018 0.90650 0.91568 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 2 C 0.07 0.65 3.40 -26.57 -0.09 0.56 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.08 0.74 5.83 -3.53 -0.02 0.72 16 5 N -0.63 -7.86 3.02 -172.28 -0.52 -8.38 16 6 C 0.52 8.38 7.36 -10.98 -0.08 8.30 16 7 O -0.51 -10.25 15.01 5.56 0.08 -10.16 16 8 C 0.03 0.54 3.40 -4.97 -0.02 0.53 16 9 N -0.51 -10.46 4.85 -232.69 -1.13 -11.59 16 10 C 0.06 1.19 5.65 -2.83 -0.02 1.17 16 11 C -0.15 -3.46 5.37 -24.91 -0.13 -3.60 16 12 C 0.25 6.35 0.87 -89.63 -0.08 6.27 16 13 O -0.58 -15.52 13.16 -35.23 -0.46 -15.98 16 14 C -0.54 -14.27 8.27 -34.44 -0.28 -14.56 16 15 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 16 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 17 N -0.89 -23.95 10.75 55.43 0.60 -23.36 16 18 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 C 0.06 1.28 5.86 -2.30 -0.01 1.27 16 23 C 0.08 0.95 5.93 -3.53 -0.02 0.93 16 24 C 0.08 0.72 3.40 -26.58 -0.09 0.63 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.14 -1.04 9.57 37.16 0.36 -0.69 16 27 O -0.38 -3.85 10.03 -35.23 -0.35 -4.20 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.79 6.05 -51.93 -0.31 0.48 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 34 H 0.10 1.29 7.59 -51.93 -0.39 0.90 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16 37 H 0.08 1.99 7.53 -51.93 -0.39 1.59 16 38 H 0.05 1.29 8.04 -51.93 -0.42 0.88 16 39 H 0.38 10.16 7.56 45.56 0.34 10.51 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 42 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.10 1.26 7.08 -51.93 -0.37 0.89 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -31.30 367.93 -8.84 -40.14 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.34 Total: 9.77 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.23 Total: 2.74 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -1.05 Total: -43.33 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.73 Total: -30.35 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.30 -8.84 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.977 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds