Wall clock time and date at job start Fri Apr 10 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47380 * 2 1 4 4 C 1.50701 * 109.47397 * 240.00199 * 2 1 3 5 5 O 1.21279 * 120.00354 * 240.00000 * 4 2 1 6 6 N 1.34774 * 119.99714 * 59.99601 * 4 2 1 7 7 C 1.46501 * 120.00254 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47795 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.81951 * 305.57234 * 8 7 6 10 10 C 1.54378 * 109.83671 * 184.58897 * 8 7 6 11 11 C 1.55303 * 102.25442 * 219.13159 * 10 8 7 12 12 C 1.54941 * 100.94211 * 34.13026 * 11 10 8 13 13 O 1.43244 * 109.82921 * 66.45102 * 8 7 6 14 14 N 1.46900 * 109.47469 * 120.00111 * 2 1 3 15 15 C 1.47446 * 111.00255 * 179.87428 * 14 2 1 16 16 C 1.54316 * 107.23320 * 123.25926 * 15 14 2 17 17 C 1.55139 * 103.01810 * 22.28197 * 16 15 14 18 18 O 1.42900 * 110.99015 * 82.44200 * 17 16 15 19 19 C 1.50701 * 110.98859 * 206.25316 * 17 16 15 20 20 H 1.08002 * 120.00020 * 118.55137 * 19 17 16 21 21 C 1.37875 * 120.00433 * 298.54581 * 19 17 16 22 22 N 1.31520 * 119.99680 * 0.02562 * 21 19 17 23 23 Si 1.86796 * 120.00216 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47148 * 60.00541 * 23 21 19 25 25 H 1.48497 * 109.47135 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47064 * 300.00492 * 23 21 19 27 27 C 1.47843 * 110.99888 * 300.71879 * 14 2 1 28 28 H 1.09005 * 109.47042 * 299.99359 * 1 2 3 29 29 H 1.08999 * 109.47240 * 59.99719 * 1 2 3 30 30 H 1.09003 * 109.46739 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00331 * 0.02562 * 6 4 2 32 32 H 1.09006 * 109.47085 * 300.00584 * 7 6 4 33 33 H 1.09008 * 109.47163 * 59.99747 * 7 6 4 34 34 H 1.09001 * 110.84238 * 337.32105 * 10 8 7 35 35 H 1.09000 * 110.84942 * 100.93634 * 10 8 7 36 36 H 1.08997 * 111.12569 * 276.21117 * 11 10 8 37 37 H 1.08997 * 111.16289 * 152.06568 * 11 10 8 38 38 H 1.09005 * 110.31353 * 204.64021 * 12 11 10 39 39 H 1.09003 * 110.31295 * 82.47165 * 12 11 10 40 40 H 1.08997 * 109.88511 * 242.66682 * 15 14 2 41 41 H 1.08995 * 109.88851 * 3.68984 * 15 14 2 42 42 H 1.08999 * 110.70589 * 140.66668 * 16 15 14 43 43 H 1.08996 * 110.70709 * 263.73004 * 16 15 14 44 44 H 0.96702 * 114.00628 * 61.44786 * 18 17 16 45 45 H 0.96999 * 119.99481 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.37465 * 332.46027 * 27 14 2 47 47 H 1.09003 * 110.37404 * 94.80784 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4545 7 6 2.1946 -0.9407 -3.6508 8 6 1.6852 -0.2190 -4.9000 9 1 0.5998 -0.1279 -4.8574 10 6 2.0976 -1.0044 -6.1635 11 6 2.4716 0.1338 -7.1517 12 6 3.0706 1.1817 -6.1803 13 8 2.2789 1.0817 -4.9858 14 7 2.0197 -0.6925 1.1994 15 6 3.4936 -0.7148 1.2319 16 6 3.9316 -0.0574 2.5576 17 6 2.6767 -0.2131 3.4563 18 8 2.6307 -1.5118 4.0507 19 6 2.6309 0.8627 4.5106 20 1 1.8068 1.5602 4.5350 21 6 3.6411 0.9564 5.4442 22 7 4.6450 0.1072 5.4144 23 14 3.5848 2.2903 6.7507 24 1 2.3550 2.1314 7.5677 25 1 4.7790 2.1769 7.6259 26 1 3.5757 3.6236 6.0967 27 6 1.5316 -0.0322 2.4288 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.1492 0.5390 -2.5435 32 1 3.2846 -0.9411 -3.6509 33 1 1.8309 -1.9683 -3.6507 34 1 2.9591 -1.6407 -5.9606 35 1 1.2622 -1.5911 -6.5455 36 1 1.5866 0.5244 -7.6540 37 1 3.2149 -0.2015 -7.8750 38 1 2.9890 2.1821 -6.6055 39 1 4.1126 0.9454 -5.9644 40 1 3.8498 -1.7442 1.1930 41 1 3.8917 -0.1527 0.3872 42 1 4.7818 -0.5867 2.9878 43 1 4.1715 0.9949 2.4051 44 1 3.3815 -1.7070 4.6280 45 1 5.3559 0.1734 6.0710 46 1 1.3509 1.0268 2.2447 47 1 0.6225 -0.5170 2.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:09 Heat of formation + Delta-G solvation = -125.741719 kcal Electronic energy + Delta-G solvation = -26963.889511 eV Core-core repulsion = 23146.549920 eV Total energy + Delta-G solvation = -3817.339591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22842 -39.52857 -37.82359 -34.90590 -34.60391 -32.60626 -32.08426 -31.93773 -30.23400 -28.16738 -27.65501 -25.97471 -24.91389 -23.02908 -22.12708 -21.52215 -20.50937 -19.61084 -19.31255 -17.41053 -17.14074 -16.77621 -16.14320 -16.13329 -15.37806 -14.92105 -14.81120 -14.70095 -14.20797 -14.03114 -13.72813 -13.67668 -13.25481 -12.81272 -12.61284 -12.38477 -12.20437 -12.13294 -11.93865 -11.76636 -11.64000 -11.61812 -11.46510 -11.28483 -11.16389 -11.01040 -10.93252 -10.63184 -10.40609 -10.19398 -9.91558 -9.76182 -9.33741 -9.11719 -8.98784 -8.53907 -7.98863 -7.49457 -6.15148 -4.23739 2.92802 3.10453 3.26568 3.31617 3.34126 3.50646 4.02560 4.30228 4.33274 4.42765 4.64032 4.70523 4.78315 4.89133 5.04882 5.12537 5.23393 5.26611 5.29154 5.30879 5.35711 5.44428 5.50900 5.62080 5.71287 5.79456 5.87919 5.91098 6.11114 6.21055 6.24102 6.36594 6.44011 6.62324 6.66200 6.77741 7.01235 7.19718 7.49702 7.53997 7.57989 7.74262 7.83876 7.89712 8.22811 8.49299 8.78069 9.44720 9.60343 10.91682 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002670 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.780429 B =10482.743982 C =10671.773405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 H 0.061 0.939 4 C 0.519 3.481 5 O -0.518 6.518 6 N -0.732 5.732 7 C 0.113 3.887 8 C 0.069 3.931 9 H 0.088 0.912 10 C -0.148 4.148 11 C -0.156 4.156 12 C 0.049 3.951 13 O -0.375 6.375 14 N -0.506 5.506 15 C 0.060 3.940 16 C -0.147 4.147 17 C 0.252 3.748 18 O -0.578 6.578 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.071 3.929 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.061 3.939 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.401 0.599 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.376 0.624 45 H 0.266 0.734 46 H 0.047 0.953 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 1.566 -23.645 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 H 0.079 0.921 4 C 0.305 3.695 5 O -0.392 6.392 6 N -0.386 5.386 7 C -0.011 4.011 8 C 0.011 3.989 9 H 0.106 0.894 10 C -0.186 4.186 11 C -0.194 4.194 12 C -0.028 4.028 13 O -0.294 6.294 14 N -0.232 5.232 15 C -0.068 4.068 16 C -0.187 4.187 17 C 0.212 3.788 18 O -0.385 6.385 19 C -0.575 4.575 20 H 0.078 0.922 21 C -0.131 4.131 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.066 4.066 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.637 0.390 -23.688 24.352 hybrid contribution 0.775 1.895 0.737 2.176 sum -4.862 2.285 -22.950 23.570 Atomic orbital electron populations 1.21784 0.92595 1.03144 1.02148 1.21755 0.96943 0.96037 0.90635 0.92138 1.20694 0.79926 0.84720 0.84156 1.90698 1.36513 1.25604 1.86407 1.45900 1.55036 1.32516 1.05196 1.21689 0.99978 0.95964 0.83500 1.23023 0.98084 0.83512 0.94318 0.89447 1.23109 1.02968 0.98408 0.94157 1.23268 1.01906 0.95857 0.98347 1.23406 0.95087 0.99755 0.84504 1.88478 1.66196 1.31636 1.43116 1.63519 1.09787 1.50027 0.99834 1.22712 0.86371 1.00712 0.96956 1.23315 1.01712 0.99272 0.94362 1.19514 0.88314 0.82182 0.88809 1.86148 1.50801 1.35197 1.66396 1.21498 1.07661 1.14577 1.13717 0.92196 1.25006 0.94791 0.95968 0.97368 1.69747 1.10738 1.36704 1.36071 0.86542 0.77555 0.81882 0.81320 1.20062 1.21189 1.20247 1.23029 0.99575 0.95523 0.88445 0.91064 0.92485 0.91383 0.76513 0.91311 0.90621 0.89858 0.89533 0.90263 0.89731 0.89616 0.92060 0.91123 0.95210 0.90450 0.92869 0.77462 0.92361 0.93505 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.97 37.15 0.33 -1.53 16 2 C 0.06 0.98 2.08 -68.87 -0.14 0.84 16 3 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 4 C 0.52 8.60 6.54 -10.99 -0.07 8.53 16 5 O -0.52 -10.63 14.79 5.56 0.08 -10.55 16 6 N -0.73 -9.02 5.42 -60.29 -0.33 -9.34 16 7 C 0.11 1.21 5.21 -4.04 -0.02 1.19 16 8 C 0.07 0.55 3.56 -26.01 -0.09 0.46 16 9 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.15 -0.86 6.54 -24.79 -0.16 -1.02 16 11 C -0.16 -0.80 7.16 -24.49 -0.18 -0.98 16 12 C 0.05 0.34 7.78 38.18 0.30 0.64 16 13 O -0.37 -3.65 10.99 -35.23 -0.39 -4.04 16 14 N -0.51 -10.67 4.83 -224.69 -1.08 -11.76 16 15 C 0.06 1.34 5.24 -2.84 -0.01 1.33 16 16 C -0.15 -3.62 5.37 -24.91 -0.13 -3.76 16 17 C 0.25 6.50 0.87 -89.64 -0.08 6.42 16 18 O -0.58 -15.79 13.16 -35.23 -0.46 -16.25 16 19 C -0.54 -14.60 8.27 -34.44 -0.28 -14.89 16 20 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 21 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 22 N -0.89 -24.45 10.75 55.43 0.60 -23.85 16 23 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.06 1.36 4.57 -2.30 -0.01 1.35 16 28 H 0.07 0.97 7.04 -51.93 -0.37 0.60 16 29 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.40 4.07 7.89 -40.82 -0.32 3.75 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.69 8.05 -51.93 -0.42 1.28 16 41 H 0.03 0.63 6.91 -51.93 -0.36 0.28 16 42 H 0.08 2.02 7.54 -51.93 -0.39 1.63 16 43 H 0.05 1.32 8.04 -51.93 -0.42 0.90 16 44 H 0.38 10.31 7.57 45.56 0.34 10.66 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.05 0.99 7.47 -51.93 -0.39 0.60 16 47 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -32.11 369.76 -8.99 -41.10 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.31 Total: 12.83 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -0.65 Total: 0.40 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.82 Total: -44.96 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.77 Total: -30.84 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.11 -8.99 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.644 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds