Wall clock time and date at job start Fri Apr 10 2020 18:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47435 * 2 1 4 4 C 1.50707 * 109.47098 * 240.00473 * 2 1 3 5 5 O 1.21284 * 119.99899 * 240.00717 * 4 2 1 6 6 N 1.34782 * 119.99848 * 59.99773 * 4 2 1 7 7 C 1.46495 * 119.99783 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47042 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.87225 * 58.99040 * 8 7 6 10 10 C 1.54102 * 109.88097 * 179.97438 * 8 7 6 11 11 C 1.54811 * 104.18767 * 121.45087 * 10 8 7 12 12 C 1.55002 * 102.09101 * 20.88599 * 11 10 8 13 13 O 1.43738 * 109.87785 * 297.82814 * 8 7 6 14 14 N 1.46897 * 109.47139 * 120.00544 * 2 1 3 15 15 C 1.47905 * 111.00050 * 179.86982 * 14 2 1 16 16 C 1.53991 * 107.22505 * 214.25344 * 15 14 2 17 17 C 1.54594 * 105.14285 * 1.12969 * 16 15 14 18 18 O 1.42903 * 110.72249 * 263.42074 * 17 16 15 19 19 C 1.50701 * 110.72474 * 140.31365 * 17 16 15 20 20 H 1.08003 * 119.99793 * 241.45322 * 19 17 16 21 21 C 1.37876 * 120.00088 * 61.45304 * 19 17 16 22 22 N 1.31509 * 119.99942 * 0.02562 * 21 19 17 23 23 Si 1.86792 * 119.99899 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47587 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47499 * 120.00371 * 23 21 19 26 26 H 1.48503 * 109.47308 * 240.00070 * 23 21 19 27 27 C 1.48813 * 111.18681 * 62.53648 * 14 2 1 28 28 H 1.09003 * 109.46683 * 299.99783 * 1 2 3 29 29 H 1.09000 * 109.47202 * 59.99274 * 1 2 3 30 30 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99527 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47144 * 299.99714 * 7 6 4 33 33 H 1.08998 * 109.47505 * 59.99964 * 7 6 4 34 34 H 1.08997 * 110.49439 * 240.12948 * 10 8 7 35 35 H 1.09005 * 110.48546 * 2.78499 * 10 8 7 36 36 H 1.08997 * 110.90646 * 139.08016 * 11 10 8 37 37 H 1.08998 * 110.91090 * 262.65631 * 11 10 8 38 38 H 1.08992 * 110.61883 * 81.47391 * 12 11 10 39 39 H 1.08998 * 110.62016 * 204.31824 * 12 11 10 40 40 H 1.09002 * 109.91668 * 94.80258 * 15 14 2 41 41 H 1.09002 * 109.91761 * 333.70433 * 15 14 2 42 42 H 1.09005 * 110.30467 * 120.04331 * 16 15 14 43 43 H 1.08997 * 110.31304 * 242.20852 * 16 15 14 44 44 H 0.96703 * 113.99663 * 298.54059 * 18 17 16 45 45 H 0.97003 * 120.00498 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.51915 * 41.07024 * 27 14 2 47 47 H 1.09009 * 110.83927 * 278.09443 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6965 -1.1194 6 7 1.7067 -0.2498 -2.4547 7 6 2.1945 -0.9406 -3.6509 8 6 1.6851 -0.2188 -4.9000 9 1 2.0308 0.8149 -4.8975 10 6 2.1936 -0.9378 -6.1646 11 6 0.9024 -1.3287 -6.9240 12 6 -0.1369 -0.3479 -6.3235 13 8 0.2486 -0.2569 -4.9348 14 7 2.0196 -0.6926 1.1993 15 6 3.4982 -0.7150 1.2320 16 6 3.9198 -2.0461 1.8815 17 6 2.5959 -2.7841 2.1860 18 8 2.1991 -2.5718 3.5423 19 6 2.7273 -4.2569 1.8951 20 1 2.1003 -4.7173 1.1459 21 6 3.6478 -5.0165 2.5854 22 7 4.4109 -4.4559 3.4980 23 14 3.8101 -6.8422 2.2253 24 1 2.8444 -7.2253 1.1642 25 1 5.1915 -7.1354 1.7659 26 1 3.5238 -7.6175 3.4591 27 6 1.5956 -2.1190 1.2075 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1493 0.5391 -2.5435 32 1 3.2846 -0.9409 -3.6511 33 1 1.8308 -1.9681 -3.6508 34 1 2.8019 -0.2641 -6.7681 35 1 2.7618 -1.8281 -5.8949 36 1 1.0170 -1.1658 -7.9956 37 1 0.6271 -2.3628 -6.7167 38 1 -0.0677 0.6271 -6.8055 39 1 -1.1450 -0.7512 -6.4188 40 1 3.8692 0.1212 1.8245 41 1 3.8929 -0.6554 0.2177 42 1 4.5273 -2.6291 1.1892 43 1 4.4698 -1.8595 2.8038 44 1 2.8322 -2.9032 4.1938 45 1 5.0583 -4.9904 3.9840 46 1 1.6876 -2.5506 0.2109 47 1 0.5742 -2.2178 1.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:14 Heat of formation + Delta-G solvation = -116.984024 kcal Electronic energy + Delta-G solvation = -27598.907911 eV Core-core repulsion = 23781.948083 eV Total energy + Delta-G solvation = -3816.959829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36739 -39.65269 -37.40254 -34.89030 -34.49894 -32.55456 -31.95979 -31.92345 -30.16758 -27.99517 -27.52147 -25.82998 -24.75975 -23.04414 -22.20143 -21.46805 -20.55973 -19.61635 -19.23841 -17.13268 -16.86662 -16.81223 -16.19888 -15.88391 -15.56229 -14.99117 -14.73264 -14.65372 -14.13258 -14.00911 -13.87925 -13.39350 -13.01841 -12.83147 -12.65713 -12.44267 -12.21097 -12.10687 -11.89189 -11.71257 -11.57110 -11.36299 -11.18075 -11.08569 -11.06108 -10.77728 -10.64278 -10.42520 -10.26079 -10.09552 -10.04726 -9.83646 -9.51674 -8.94193 -8.83369 -8.41903 -7.90216 -7.45431 -6.03334 -4.08684 2.91457 3.22818 3.31918 3.39404 3.45255 3.56677 4.15125 4.37884 4.43463 4.50950 4.64543 4.68010 4.84880 4.97629 5.10103 5.21089 5.24905 5.29383 5.31595 5.39087 5.39913 5.51165 5.58634 5.66405 5.78151 5.82315 5.97291 6.03370 6.23105 6.26979 6.38726 6.44460 6.51270 6.58138 6.76521 6.86120 7.10907 7.33884 7.57043 7.60091 7.73413 7.76679 7.85846 8.00922 8.39618 8.51186 8.92992 9.58249 9.73336 11.04127 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003589 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.609095 B = 7799.941312 C = 8817.264441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 H 0.098 0.902 4 C 0.478 3.522 5 O -0.511 6.511 6 N -0.731 5.731 7 C 0.121 3.879 8 C 0.066 3.934 9 H 0.074 0.926 10 C -0.150 4.150 11 C -0.156 4.156 12 C 0.046 3.954 13 O -0.369 6.369 14 N -0.489 5.489 15 C 0.034 3.966 16 C -0.117 4.117 17 C 0.258 3.742 18 O -0.584 6.584 19 C -0.523 4.523 20 H 0.058 0.942 21 C 0.068 3.932 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.043 3.957 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.399 0.601 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.375 0.625 45 H 0.263 0.737 46 H 0.077 0.923 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 11.889 -19.327 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.116 0.884 4 C 0.263 3.737 5 O -0.385 6.385 6 N -0.385 5.385 7 C -0.003 4.003 8 C 0.008 3.992 9 H 0.092 0.908 10 C -0.188 4.188 11 C -0.193 4.193 12 C -0.031 4.031 13 O -0.288 6.288 14 N -0.211 5.211 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.218 3.782 18 O -0.391 6.391 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.084 4.084 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.224 0.776 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.989 11.683 -18.754 22.893 hybrid contribution 0.995 -1.282 -1.045 1.930 sum -4.994 10.402 -19.799 22.916 Atomic orbital electron populations 1.21740 0.92442 1.03094 1.02190 1.22064 0.97338 0.99215 0.87290 0.88373 1.22378 0.80491 0.85555 0.85277 1.90787 1.36473 1.25257 1.86003 1.46157 1.54566 1.32389 1.05415 1.21512 0.98953 0.96953 0.82873 1.23010 0.82006 0.99231 0.94999 0.90800 1.22935 0.98489 1.01662 0.95731 1.23140 0.94882 1.00889 1.00423 1.23556 0.99161 0.98294 0.82050 1.88940 1.19851 1.95099 1.24942 1.65255 1.09827 1.16057 1.29963 1.22941 0.87369 0.99688 0.99350 1.22767 1.00459 0.92905 0.99481 1.19287 0.87630 0.91638 0.79655 1.86133 1.51469 1.84210 1.17328 1.21628 1.19721 0.93902 1.20979 0.92346 1.24977 0.94889 0.98714 0.94745 1.69751 1.23327 1.35941 1.24778 0.86467 0.77788 0.85140 0.78140 1.19802 1.21056 1.20951 1.23521 0.98996 0.85644 1.00205 0.90706 0.92403 0.91914 0.76640 0.90519 0.90952 0.90249 0.89754 0.90135 0.90236 0.92190 0.88886 0.92741 0.93846 0.92127 0.92181 0.77578 0.92696 0.90566 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.01 37.16 0.33 -1.53 16 2 C 0.05 0.87 2.85 -68.86 -0.20 0.68 16 3 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 4 C 0.48 8.00 6.04 -10.98 -0.07 7.93 16 5 O -0.51 -10.93 11.76 5.55 0.07 -10.86 16 6 N -0.73 -9.26 5.37 -60.29 -0.32 -9.58 16 7 C 0.12 1.42 5.15 -4.05 -0.02 1.40 16 8 C 0.07 0.57 3.49 -26.16 -0.09 0.48 16 9 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.15 -1.04 6.64 -25.20 -0.17 -1.21 16 11 C -0.16 -0.98 7.15 -24.72 -0.18 -1.16 16 12 C 0.05 0.32 7.72 38.22 0.29 0.62 16 13 O -0.37 -3.72 11.05 -35.23 -0.39 -4.10 16 14 N -0.49 -10.16 5.31 -223.63 -1.19 -11.35 16 15 C 0.03 0.74 5.98 -2.75 -0.02 0.72 16 16 C -0.12 -3.01 5.26 -25.38 -0.13 -3.14 16 17 C 0.26 6.99 0.96 -89.91 -0.09 6.91 16 18 O -0.58 -16.38 13.10 -35.23 -0.46 -16.84 16 19 C -0.52 -15.24 8.14 -34.44 -0.28 -15.52 16 20 H 0.06 1.72 7.78 -52.48 -0.41 1.31 16 21 C 0.07 1.93 5.28 -17.82 -0.09 1.83 16 22 N -0.90 -25.49 11.00 55.43 0.61 -24.88 16 23 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 C 0.04 1.03 4.27 -1.74 -0.01 1.02 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.61 7.56 -51.93 -0.39 0.21 16 30 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 31 H 0.40 4.09 7.84 -40.82 -0.32 3.77 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.93 5.65 -51.93 -0.29 0.64 16 42 H 0.06 1.68 7.84 -51.93 -0.41 1.27 16 43 H 0.06 1.59 7.98 -51.93 -0.41 1.17 16 44 H 0.38 10.57 7.46 45.56 0.34 10.91 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.08 1.91 5.07 -51.93 -0.26 1.64 16 47 H 0.06 1.48 7.70 -51.92 -0.40 1.08 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -33.22 363.87 -9.04 -42.26 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.11 Total: 13.82 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.71 Total: -0.96 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.90 Total: -45.81 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.79 Total: -31.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.22 -9.04 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.725 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds