Wall clock time and date at job start Fri Apr 10 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47435 * 2 1 4 4 C 1.50707 * 109.47098 * 240.00473 * 2 1 3 5 5 O 1.21284 * 119.99899 * 240.00717 * 4 2 1 6 6 N 1.34782 * 119.99848 * 59.99773 * 4 2 1 7 7 C 1.46495 * 119.99783 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47042 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.87225 * 58.99040 * 8 7 6 10 10 C 1.54102 * 109.88097 * 179.97438 * 8 7 6 11 11 C 1.54811 * 104.18767 * 121.45087 * 10 8 7 12 12 C 1.55002 * 102.09101 * 20.88599 * 11 10 8 13 13 O 1.43738 * 109.87785 * 297.82814 * 8 7 6 14 14 N 1.46897 * 109.47139 * 120.00544 * 2 1 3 15 15 C 1.47905 * 111.00050 * 179.86982 * 14 2 1 16 16 C 1.53991 * 107.22505 * 214.25344 * 15 14 2 17 17 C 1.54594 * 105.14285 * 1.12969 * 16 15 14 18 18 O 1.42903 * 110.72249 * 263.42074 * 17 16 15 19 19 C 1.50701 * 110.72474 * 140.31365 * 17 16 15 20 20 H 1.08003 * 119.99793 * 241.45322 * 19 17 16 21 21 C 1.37876 * 120.00088 * 61.45304 * 19 17 16 22 22 N 1.31509 * 119.99942 * 0.02562 * 21 19 17 23 23 Si 1.86792 * 119.99899 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47587 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47499 * 120.00371 * 23 21 19 26 26 H 1.48503 * 109.47308 * 240.00070 * 23 21 19 27 27 C 1.48813 * 111.18681 * 62.53648 * 14 2 1 28 28 H 1.09003 * 109.46683 * 299.99783 * 1 2 3 29 29 H 1.09000 * 109.47202 * 59.99274 * 1 2 3 30 30 H 1.08998 * 109.47246 * 179.97438 * 1 2 3 31 31 H 0.96995 * 119.99527 * 0.02562 * 6 4 2 32 32 H 1.09004 * 109.47144 * 299.99714 * 7 6 4 33 33 H 1.08998 * 109.47505 * 59.99964 * 7 6 4 34 34 H 1.08997 * 110.49439 * 240.12948 * 10 8 7 35 35 H 1.09005 * 110.48546 * 2.78499 * 10 8 7 36 36 H 1.08997 * 110.90646 * 139.08016 * 11 10 8 37 37 H 1.08998 * 110.91090 * 262.65631 * 11 10 8 38 38 H 1.08992 * 110.61883 * 81.47391 * 12 11 10 39 39 H 1.08998 * 110.62016 * 204.31824 * 12 11 10 40 40 H 1.09002 * 109.91668 * 94.80258 * 15 14 2 41 41 H 1.09002 * 109.91761 * 333.70433 * 15 14 2 42 42 H 1.09005 * 110.30467 * 120.04331 * 16 15 14 43 43 H 1.08997 * 110.31304 * 242.20852 * 16 15 14 44 44 H 0.96703 * 113.99663 * 298.54059 * 18 17 16 45 45 H 0.97003 * 120.00498 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.51915 * 41.07024 * 27 14 2 47 47 H 1.09009 * 110.83927 * 278.09443 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6965 -1.1194 6 7 1.7067 -0.2498 -2.4547 7 6 2.1945 -0.9406 -3.6509 8 6 1.6851 -0.2188 -4.9000 9 1 2.0308 0.8149 -4.8975 10 6 2.1936 -0.9378 -6.1646 11 6 0.9024 -1.3287 -6.9240 12 6 -0.1369 -0.3479 -6.3235 13 8 0.2486 -0.2569 -4.9348 14 7 2.0196 -0.6926 1.1993 15 6 3.4982 -0.7150 1.2320 16 6 3.9198 -2.0461 1.8815 17 6 2.5959 -2.7841 2.1860 18 8 2.1991 -2.5718 3.5423 19 6 2.7273 -4.2569 1.8951 20 1 2.1003 -4.7173 1.1459 21 6 3.6478 -5.0165 2.5854 22 7 4.4109 -4.4559 3.4980 23 14 3.8101 -6.8422 2.2253 24 1 2.8444 -7.2253 1.1642 25 1 5.1915 -7.1354 1.7659 26 1 3.5238 -7.6175 3.4591 27 6 1.5956 -2.1190 1.2075 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.1493 0.5391 -2.5435 32 1 3.2846 -0.9409 -3.6511 33 1 1.8308 -1.9681 -3.6508 34 1 2.8019 -0.2641 -6.7681 35 1 2.7618 -1.8281 -5.8949 36 1 1.0170 -1.1658 -7.9956 37 1 0.6271 -2.3628 -6.7167 38 1 -0.0677 0.6271 -6.8055 39 1 -1.1450 -0.7512 -6.4188 40 1 3.8692 0.1212 1.8245 41 1 3.8929 -0.6554 0.2177 42 1 4.5273 -2.6291 1.1892 43 1 4.4698 -1.8595 2.8038 44 1 2.8322 -2.9032 4.1938 45 1 5.0583 -4.9904 3.9840 46 1 1.6876 -2.5506 0.2109 47 1 0.5742 -2.2178 1.5753 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:13 Heat of formation + Delta-G solvation = -144.897073 kcal Electronic energy + Delta-G solvation = -27600.118312 eV Core-core repulsion = 23781.948083 eV Total energy + Delta-G solvation = -3818.170229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71320 -40.45284 -39.12014 -36.59757 -35.81501 -34.15486 -33.58078 -33.06480 -31.09638 -29.94101 -29.20075 -26.92806 -26.49956 -24.29080 -22.98283 -22.23506 -22.15812 -21.47514 -20.73573 -18.97638 -18.28103 -17.73133 -17.25349 -16.99637 -16.84827 -16.67413 -16.18056 -15.98486 -15.81923 -15.49505 -14.96769 -14.60497 -14.53107 -14.26671 -14.08027 -13.76688 -13.41016 -13.38285 -13.21313 -12.99755 -12.90698 -12.66350 -12.62007 -12.45603 -12.37098 -12.26862 -12.13907 -12.07320 -11.90462 -11.66051 -11.61162 -11.16303 -11.02940 -10.69173 -10.58933 -10.09025 -10.04477 -9.12152 -8.20725 -6.34787 1.35473 1.36648 1.49076 1.60741 2.18295 2.37472 2.86557 3.02019 3.09599 3.55491 3.73982 3.84807 3.95759 3.97433 4.00547 4.12045 4.15804 4.19632 4.28944 4.41772 4.44391 4.57417 4.58897 4.64999 4.75934 4.81661 4.86612 4.89870 4.92076 4.92771 4.96133 5.07176 5.12401 5.17160 5.26972 5.33150 5.45590 5.55595 5.60578 5.74391 5.90258 5.92481 6.11793 6.26321 6.56733 6.68960 7.27882 7.35348 7.49697 8.85341 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003589 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.609095 B = 7799.941312 C = 8817.264441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.050 3.950 3 H 0.134 0.866 4 C 0.477 3.523 5 O -0.565 6.565 6 N -0.710 5.710 7 C 0.120 3.880 8 C 0.073 3.927 9 H 0.094 0.906 10 C -0.150 4.150 11 C -0.154 4.154 12 C 0.041 3.959 13 O -0.395 6.395 14 N -0.490 5.490 15 C 0.044 3.956 16 C -0.107 4.107 17 C 0.242 3.758 18 O -0.589 6.589 19 C -0.556 4.556 20 H 0.042 0.958 21 C 0.027 3.973 22 N -0.911 5.911 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.277 1.277 26 H -0.272 1.272 27 C 0.058 3.942 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.415 0.585 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.029 0.971 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.268 0.732 46 H 0.063 0.937 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 13.598 -21.133 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 H 0.151 0.849 4 C 0.263 3.737 5 O -0.444 6.444 6 N -0.363 5.363 7 C -0.004 4.004 8 C 0.015 3.985 9 H 0.111 0.889 10 C -0.188 4.188 11 C -0.191 4.191 12 C -0.035 4.035 13 O -0.314 6.314 14 N -0.213 5.213 15 C -0.083 4.083 16 C -0.146 4.146 17 C 0.202 3.798 18 O -0.396 6.396 19 C -0.594 4.594 20 H 0.060 0.940 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.203 1.203 26 H -0.197 1.197 27 C -0.069 4.069 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.219 0.781 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.619 13.445 -20.597 25.471 hybrid contribution 1.156 -1.780 -0.542 2.191 sum -5.463 11.664 -21.139 24.754 Atomic orbital electron populations 1.21745 0.90362 1.02265 1.04469 1.22308 0.98909 0.99883 0.85142 0.84882 1.22420 0.79859 0.84840 0.86589 1.90779 1.39165 1.27642 1.86797 1.45950 1.53496 1.32290 1.04609 1.21584 0.98876 0.96103 0.83850 1.22999 0.81772 0.99898 0.93874 0.88853 1.22973 0.98960 1.01645 0.95246 1.23146 0.94250 1.00097 1.01630 1.23756 0.99541 0.99459 0.80758 1.88899 1.20317 1.95259 1.26966 1.65184 1.08896 1.13936 1.33278 1.22807 0.88268 0.97876 0.99388 1.22522 0.99258 0.94641 0.98164 1.19505 0.89357 0.91409 0.79558 1.86120 1.51524 1.84137 1.17832 1.21830 1.20532 0.95530 1.21514 0.93954 1.25688 0.94302 1.02843 0.94441 1.69825 1.23181 1.37330 1.24780 0.85510 0.77812 0.80097 0.78180 1.20078 1.20263 1.19720 1.23197 0.97751 0.87543 0.98422 0.89886 0.88689 0.94264 0.74778 0.90795 0.93542 0.88076 0.90699 0.87966 0.91428 0.90354 0.88419 0.90688 0.93523 0.95243 0.93704 0.78146 0.92246 0.91906 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.01 71.98 0.65 -2.60 16 2 C 0.05 1.52 2.85 44.17 0.13 1.64 16 3 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 4 C 0.48 15.63 6.04 87.66 0.53 16.16 16 5 O -0.56 -24.77 11.76 -3.04 -0.04 -24.80 16 6 N -0.71 -16.90 5.37 -463.06 -2.49 -19.39 16 7 C 0.12 2.74 5.15 86.38 0.44 3.19 16 8 C 0.07 1.12 3.49 30.97 0.11 1.23 16 9 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 10 C -0.15 -1.79 6.64 31.59 0.21 -1.58 16 11 C -0.15 -1.63 7.15 31.90 0.23 -1.40 16 12 C 0.04 0.48 7.72 72.67 0.56 1.04 16 13 O -0.39 -7.16 11.05 -148.98 -1.65 -8.81 16 14 N -0.49 -20.12 5.31 -861.45 -4.57 -24.69 16 15 C 0.04 1.92 5.98 86.44 0.52 2.44 16 16 C -0.11 -5.67 5.26 31.47 0.17 -5.50 16 17 C 0.24 13.51 0.96 -10.34 -0.01 13.50 16 18 O -0.59 -33.89 13.10 -148.98 -1.95 -35.84 16 19 C -0.56 -33.53 8.14 25.60 0.21 -33.32 16 20 H 0.04 2.61 7.78 -2.91 -0.02 2.59 16 21 C 0.03 1.58 5.28 84.66 0.45 2.02 16 22 N -0.91 -52.71 11.00 21.45 0.24 -52.47 16 23 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 C 0.06 2.85 4.27 86.59 0.37 3.22 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.64 7.56 -2.39 -0.02 1.63 16 30 H 0.04 1.16 7.02 -2.39 -0.02 1.15 16 31 H 0.42 7.28 7.84 -92.71 -0.73 6.56 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.04 7.70 -2.38 -0.02 1.02 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 42 H 0.03 1.69 7.84 -2.38 -0.02 1.67 16 43 H 0.04 2.44 7.98 -2.39 -0.02 2.42 16 44 H 0.37 21.51 7.46 -74.06 -0.55 20.96 16 45 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.06 3.28 5.07 -2.39 -0.01 3.27 16 47 H 0.06 2.77 7.70 -2.38 -0.02 2.75 16 Total: -1.00 -74.51 363.87 -4.18 -78.69 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.30 Total: 39.29 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.55 Total: 0.04 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -6.82 Total: -96.56 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -3.63 Total: -69.45 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -74.51 -4.18 -78.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.206 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds