Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47202 * 2 1 4 4 C 1.53001 * 109.46940 * 119.99813 * 2 1 3 5 5 N 1.46910 * 109.46993 * 294.99954 * 4 2 1 6 6 C 1.47009 * 110.99880 * 293.63482 * 5 4 2 7 7 C 1.53096 * 109.25699 * 177.60600 * 6 5 4 8 8 O 1.43015 * 109.25875 * 56.85111 * 7 6 5 9 9 C 1.43019 * 113.73551 * 301.33025 * 8 7 6 10 10 C 1.47014 * 110.99763 * 169.99856 * 5 4 2 11 11 C 1.50699 * 109.47132 * 239.99273 * 2 1 3 12 12 O 1.21282 * 120.00491 * 258.41425 * 11 2 1 13 13 N 1.34780 * 120.00005 * 78.41704 * 11 2 1 14 14 C 1.47013 * 125.65016 * 185.55395 * 13 11 2 15 15 C 1.54327 * 107.27425 * 181.02217 * 14 13 11 16 16 C 1.55160 * 102.93943 * 22.19089 * 15 14 13 17 17 O 1.42907 * 111.00490 * 82.57152 * 16 15 14 18 18 C 1.50695 * 111.00593 * 206.38662 * 16 15 14 19 19 H 1.07997 * 120.00075 * 24.60038 * 18 16 15 20 20 C 1.37882 * 120.00243 * 204.59684 * 18 16 15 21 21 N 1.31520 * 120.00050 * 170.17438 * 20 18 16 22 22 Si 1.86796 * 119.99870 * 350.17533 * 20 18 16 23 23 H 1.48497 * 109.47191 * 88.78815 * 22 20 18 24 24 H 1.48499 * 109.47246 * 208.79069 * 22 20 18 25 25 H 1.48500 * 109.47012 * 328.78886 * 22 20 18 26 26 C 1.47425 * 125.64452 * 5.24427 * 13 11 2 27 27 H 1.08995 * 109.47322 * 306.07006 * 1 2 3 28 28 H 1.09004 * 109.46796 * 66.06760 * 1 2 3 29 29 H 1.08997 * 109.47354 * 186.06210 * 1 2 3 30 30 H 1.09007 * 109.47185 * 54.99483 * 4 2 1 31 31 H 1.08991 * 109.47537 * 174.99823 * 4 2 1 32 32 H 1.09005 * 109.50693 * 297.54552 * 6 5 4 33 33 H 1.09007 * 109.50652 * 57.67138 * 6 5 4 34 34 H 1.08996 * 109.50901 * 296.91132 * 7 6 5 35 35 H 1.08999 * 109.50316 * 176.78201 * 7 6 5 36 36 H 1.09004 * 109.50393 * 298.73494 * 9 8 7 37 37 H 1.08998 * 109.54178 * 178.63070 * 9 8 7 38 38 H 1.08993 * 109.50773 * 302.32489 * 10 5 4 39 39 H 1.08997 * 109.50561 * 62.41523 * 10 5 4 40 40 H 1.09007 * 109.88454 * 300.43492 * 14 13 11 41 41 H 1.08994 * 109.88391 * 61.44828 * 14 13 11 42 42 H 1.08993 * 110.72289 * 140.54864 * 15 14 13 43 43 H 1.09001 * 110.72114 * 263.82934 * 15 14 13 44 44 H 0.96701 * 113.99634 * 56.02868 * 17 16 15 45 45 H 0.96998 * 119.99496 * 179.97438 * 21 20 18 46 46 H 1.09002 * 110.36652 * 274.74614 * 26 13 11 47 47 H 1.09002 * 110.37005 * 37.06911 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0376 2.4457 6 6 2.3403 1.3353 2.4934 7 6 1.8626 2.1159 3.7207 8 8 2.0959 1.3355 4.8962 9 6 1.4391 0.0652 4.8837 10 6 1.9125 -0.7362 3.6681 11 6 2.0324 -0.7106 -1.2304 12 8 2.4334 -1.8523 -1.1501 13 7 2.0360 -0.0772 -2.4201 14 6 2.3874 -0.6835 -3.7125 15 6 2.2744 0.4222 -4.7831 16 6 2.4146 1.7255 -3.9529 17 8 3.7887 2.0303 -3.7061 18 6 1.7228 2.8775 -4.6349 19 1 0.9136 2.6894 -5.3249 20 6 2.1229 4.1717 -4.3780 21 7 1.6581 5.1612 -5.1092 22 14 3.3251 4.5198 -2.9913 23 1 4.7148 4.4288 -3.5065 24 1 3.0834 5.8842 -2.4574 25 1 3.1327 3.5230 -1.9075 26 6 1.6822 1.3367 -2.6417 27 1 -0.3634 0.6050 0.8306 28 1 -0.3633 0.4169 -0.9394 29 1 -0.3634 -1.0219 0.1085 30 1 1.6053 -1.7198 1.2953 31 1 3.1262 -0.7995 1.2057 32 1 3.4163 1.1739 2.5607 33 1 2.1125 1.9018 1.5903 34 1 0.7967 2.3239 3.6275 35 1 2.4124 3.0544 3.7917 36 1 0.3608 0.2136 4.8243 37 1 1.6817 -0.4798 5.7959 38 1 1.3724 -1.6818 3.6228 39 1 2.9815 -0.9313 3.7539 40 1 3.4085 -1.0634 -3.6784 41 1 1.6973 -1.4956 -3.9408 42 1 3.0824 0.3393 -5.5099 43 1 1.3039 0.3825 -5.2777 44 1 4.3257 2.1021 -4.5071 45 1 1.9393 6.0717 -4.9282 46 1 0.6040 1.4438 -2.7607 47 1 2.0362 1.9507 -1.8136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -143.924963 kcal Electronic energy + Delta-G solvation = -27804.868598 eV Core-core repulsion = 23986.740523 eV Total energy + Delta-G solvation = -3818.128075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46857 -40.50081 -39.31697 -37.25900 -36.28000 -34.44838 -34.21497 -32.16026 -31.77886 -30.18301 -28.92161 -26.97693 -26.27766 -25.05561 -24.69454 -22.63209 -21.59939 -21.29327 -19.92847 -19.43260 -18.60725 -17.42722 -17.18878 -17.09035 -16.88355 -16.61775 -16.26685 -16.21968 -16.00784 -15.77986 -15.21469 -15.05056 -14.69751 -14.63375 -14.30491 -14.04758 -13.81866 -13.66334 -13.58113 -13.21204 -13.13136 -13.00691 -12.65475 -12.49167 -12.37315 -12.34662 -12.27702 -12.11428 -11.97985 -11.79519 -11.49907 -11.29231 -10.89267 -10.68769 -10.61338 -10.34198 -9.64300 -9.50095 -8.34259 -6.46481 1.47921 1.51295 1.54856 1.70130 1.94450 2.43636 2.68528 2.94233 2.97553 3.41704 3.49595 3.59179 3.85688 3.90666 3.98071 4.00794 4.14895 4.15972 4.19630 4.24532 4.25380 4.31900 4.48817 4.56801 4.60739 4.63287 4.69714 4.71597 4.79648 4.81544 4.87323 4.88877 4.95715 4.99310 5.02878 5.15239 5.24089 5.28917 5.32329 5.52190 5.79788 5.88178 6.08545 6.16232 6.50265 6.61471 6.97820 7.07195 7.32660 8.78394 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.004319 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.965554 B = 6481.622987 C = 7754.783912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.087 3.913 5 N -0.531 5.531 6 C 0.009 3.991 7 C 0.067 3.933 8 O -0.405 6.405 9 C 0.064 3.936 10 C 0.017 3.983 11 C 0.528 3.472 12 O -0.586 6.586 13 N -0.612 5.612 14 C 0.113 3.887 15 C -0.138 4.138 16 C 0.214 3.786 17 O -0.567 6.567 18 C -0.544 4.544 19 H 0.052 0.948 20 C 0.034 3.966 21 N -0.931 5.931 22 Si 0.996 3.004 23 H -0.287 1.287 24 H -0.333 1.333 25 H -0.261 1.261 26 C 0.113 3.887 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.385 0.615 45 H 0.267 0.733 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -9.621 15.250 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.041 4.041 5 N -0.256 5.256 6 C -0.120 4.120 7 C -0.010 4.010 8 O -0.324 6.324 9 C -0.012 4.012 10 C -0.111 4.111 11 C 0.317 3.683 12 O -0.467 6.467 13 N -0.343 5.343 14 C -0.010 4.010 15 C -0.176 4.176 16 C 0.173 3.827 17 O -0.376 6.376 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.167 4.167 21 N -0.568 5.568 22 Si 0.830 3.170 23 H -0.214 1.214 24 H -0.265 1.265 25 H -0.187 1.187 26 C -0.009 4.009 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.234 0.766 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.292 -9.961 16.043 18.928 hybrid contribution 1.481 0.364 -0.858 1.750 sum 0.189 -9.597 15.185 17.964 Atomic orbital electron populations 1.21548 0.90285 1.03044 1.02950 1.21243 0.99858 1.00126 0.90960 0.89159 1.21728 0.97277 0.97112 0.87973 1.62202 1.57484 1.03918 1.02035 1.22925 0.96408 0.91857 1.00768 1.22721 1.01639 0.93918 0.82727 1.87958 1.73623 1.30366 1.40448 1.22808 0.97266 0.83422 0.97743 1.22869 0.99918 0.98334 0.89983 1.20712 0.77320 0.86009 0.84236 1.90620 1.50040 1.19914 1.86168 1.48700 1.65976 1.12640 1.07033 1.21927 1.00283 0.96234 0.82515 1.23192 1.03681 0.93740 0.97036 1.20149 0.79395 0.91948 0.91199 1.86054 1.21989 1.91626 1.37935 1.21355 1.19646 0.90531 1.26662 0.92939 1.25760 0.97467 0.95912 0.97560 1.70083 1.46082 1.00707 1.39940 0.84933 0.78518 0.73382 0.80157 1.21400 1.26509 1.18675 1.22886 0.99771 0.79520 0.98748 0.89310 0.92785 0.92088 0.89598 0.96007 0.94955 0.89454 0.91354 0.87300 0.91478 0.86531 0.88058 0.94808 0.92152 0.91223 0.88922 0.90157 0.76557 0.92390 0.89568 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.87 8.99 71.98 0.65 -2.22 16 2 C -0.10 -2.78 2.08 -11.54 -0.02 -2.81 16 3 H 0.09 2.57 5.11 -2.39 -0.01 2.56 16 4 C 0.09 2.23 3.71 86.30 0.32 2.55 16 5 N -0.53 -11.49 4.29 -895.20 -3.84 -15.33 16 6 C 0.01 0.19 5.44 86.31 0.47 0.66 16 7 C 0.07 1.27 7.01 72.01 0.50 1.77 16 8 O -0.41 -8.52 10.83 -148.98 -1.61 -10.13 16 9 C 0.06 1.03 7.01 72.01 0.50 1.53 16 10 C 0.02 0.30 5.65 86.31 0.49 0.79 16 11 C 0.53 18.14 7.01 87.66 0.61 18.75 16 12 O -0.59 -23.05 16.45 -3.04 -0.05 -23.10 16 13 N -0.61 -21.29 3.32 -811.35 -2.70 -23.99 16 14 C 0.11 3.66 6.87 86.73 0.60 4.25 16 15 C -0.14 -4.59 6.11 31.79 0.19 -4.40 16 16 C 0.21 8.53 0.70 -10.07 -0.01 8.52 16 17 O -0.57 -22.28 8.77 -148.98 -1.31 -23.59 16 18 C -0.54 -26.92 8.86 25.60 0.23 -26.69 16 19 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 20 C 0.03 1.78 5.45 84.66 0.46 2.25 16 21 N -0.93 -53.52 13.96 21.45 0.30 -53.22 16 22 Si 1.00 45.30 24.98 68.60 1.71 47.01 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.33 -15.66 7.11 99.48 0.71 -14.96 16 25 H -0.26 -11.29 5.30 99.48 0.53 -10.76 16 26 C 0.11 4.18 5.26 86.93 0.46 4.64 16 27 H 0.09 1.87 7.92 -2.39 -0.02 1.85 16 28 H 0.05 1.34 7.49 -2.38 -0.02 1.32 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 2.20 7.96 -2.38 -0.02 2.18 16 31 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.03 0.77 8.14 -2.38 -0.02 0.76 16 33 H 0.09 1.96 6.29 -2.38 -0.01 1.94 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 39 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.74 8.12 -2.39 -0.02 2.72 16 43 H 0.08 2.67 7.98 -2.39 -0.02 2.65 16 44 H 0.38 12.96 9.06 -74.06 -0.67 12.29 16 45 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.09 3.11 7.71 -2.39 -0.02 3.10 16 47 H 0.07 2.63 5.23 -2.39 -0.01 2.62 16 Total: -1.00 -64.50 360.93 -1.93 -66.44 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.11 Total: 26.31 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.45 Total: 9.60 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -6.24 Total: -92.54 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -2.97 Total: -56.82 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.71 Total: 47.01 kcal Total: -64.50 -1.93 -66.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.490 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds