Wall clock time and date at job start Fri Apr 10 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 O 1.42894 * 109.47275 * 54.99684 * 4 2 1 6 6 C 1.42901 * 114.00397 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47663 * 179.97438 * 6 5 4 8 8 C 1.53002 * 117.50235 * 243.74403 * 7 6 5 9 9 C 1.53003 * 117.49937 * 175.08187 * 7 6 5 10 10 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 11 11 C 1.34777 * 119.99873 * 85.00531 * 10 2 1 12 12 O 1.21592 * 119.99797 * 359.97438 * 11 10 2 13 13 N 1.34774 * 119.99902 * 179.97438 * 11 10 2 14 14 C 1.47019 * 125.64846 * 359.68989 * 13 11 10 15 15 C 1.54342 * 107.26391 * 178.84715 * 14 13 11 16 16 C 1.55150 * 103.02063 * 338.14249 * 15 14 13 17 17 O 1.42902 * 111.00614 * 277.22895 * 16 15 14 18 18 C 1.50703 * 111.03746 * 153.39701 * 16 15 14 19 19 H 1.07997 * 119.99888 * 6.32659 * 18 16 15 20 20 C 1.37877 * 119.99997 * 186.33369 * 18 16 15 21 21 N 1.31508 * 119.99959 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99831 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47356 * 59.99416 * 22 20 18 24 24 H 1.48499 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46764 * 299.99538 * 22 20 18 26 26 C 1.47426 * 125.64606 * 179.97438 * 13 11 10 27 27 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 28 28 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 29 29 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47159 * 174.99653 * 4 2 1 31 31 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 32 32 H 1.09008 * 109.46905 * 300.00148 * 6 5 4 33 33 H 1.09006 * 109.47370 * 59.99381 * 6 5 4 34 34 H 1.09003 * 115.54950 * 29.42125 * 7 6 5 35 35 H 1.08999 * 117.50010 * 0.02562 * 8 7 6 36 36 H 1.08994 * 117.49699 * 145.01778 * 8 7 6 37 37 H 1.09003 * 117.49956 * 214.98183 * 9 7 6 38 38 H 1.08996 * 117.50077 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00050 * 264.72646 * 10 2 1 40 40 H 1.08995 * 109.88426 * 298.39755 * 14 13 11 41 41 H 1.08999 * 109.88168 * 59.56438 * 14 13 11 42 42 H 1.09003 * 110.84775 * 219.66974 * 15 14 13 43 43 H 1.09003 * 110.51067 * 96.45220 * 15 14 13 44 44 H 0.96698 * 114.00174 * 173.64937 * 17 16 15 45 45 H 0.97002 * 119.99935 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.37024 * 322.92854 * 26 13 11 47 47 H 1.09001 * 110.36638 * 85.14321 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.4702 -2.0304 1.3093 6 6 1.8835 -2.7928 2.4451 7 6 1.2152 -4.1684 2.4067 8 6 0.2436 -4.5137 3.5371 9 6 1.6201 -5.1808 3.4801 10 7 2.0182 -0.6906 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8575 1.1615 -2.4118 13 7 2.5967 -0.6534 -3.4575 14 6 2.9870 -2.0690 -3.5304 15 6 3.4052 -2.3543 -4.9884 16 6 2.6974 -1.2249 -5.7825 17 8 1.3367 -1.5656 -6.0552 18 6 3.4389 -0.9132 -7.0569 19 1 4.2785 -1.5230 -7.3561 20 6 3.0454 0.1506 -7.8409 21 7 2.0228 0.8929 -7.4767 22 14 3.9649 0.5373 -9.4202 23 1 3.8899 -0.6299 -10.3353 24 1 3.3489 1.7194 -10.0748 25 1 5.3867 0.8296 -9.1063 26 6 2.7842 -0.0423 -4.7860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1262 -0.7997 1.2055 31 1 1.7516 -0.1585 2.1369 32 1 2.9667 -2.9140 2.4266 33 1 1.5917 -2.2727 3.3575 34 1 0.9877 -4.5531 1.4125 35 1 0.0802 -3.7605 4.3079 36 1 -0.6229 -5.1256 3.2866 37 1 1.6586 -6.2314 3.1922 38 1 2.3624 -4.8666 4.2138 39 1 2.2527 -1.6308 -1.1518 40 1 3.8243 -2.2577 -2.8587 41 1 2.1415 -2.7010 -3.2588 42 1 3.0491 -3.3332 -5.3096 43 1 4.4874 -2.2819 -5.0964 44 1 0.8269 -0.8525 -6.4633 45 1 1.7457 1.6411 -8.0285 46 1 1.9937 0.6810 -4.9859 47 1 3.7610 0.4374 -4.8484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593485778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:51 Heat of formation + Delta-G solvation = -101.496797 kcal Electronic energy + Delta-G solvation = -26716.840187 eV Core-core repulsion = 22900.551935 eV Total energy + Delta-G solvation = -3816.288252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.75174 -38.75991 -37.56567 -36.83659 -34.71169 -34.15541 -32.18336 -31.04103 -29.53516 -27.75336 -27.63017 -26.01328 -24.95253 -22.75152 -22.71396 -21.22040 -20.76302 -19.58311 -19.45070 -17.53808 -17.18258 -16.95339 -16.45429 -15.70885 -15.34890 -15.06378 -14.95436 -14.86938 -14.37248 -14.10796 -13.64944 -13.48102 -13.04451 -13.01461 -12.77562 -12.51949 -12.20080 -11.98339 -11.89356 -11.70447 -11.61126 -11.39107 -11.16814 -11.00767 -10.98569 -10.77658 -10.70191 -10.56321 -10.54847 -10.45460 -10.14765 -9.75955 -9.52519 -9.30760 -8.74595 -8.64840 -8.30216 -7.61350 -6.22870 -4.32780 3.13473 3.23167 3.26989 3.30812 3.32877 3.55625 3.84299 4.29339 4.43528 4.52948 4.55178 4.66689 4.83230 4.95026 5.00540 5.04079 5.12155 5.20797 5.26736 5.32310 5.46861 5.49478 5.52679 5.60797 5.71782 5.73822 5.80051 5.83967 5.87674 6.08109 6.09492 6.21303 6.45857 6.57017 6.76042 6.86829 6.94474 6.98778 7.05973 7.29811 7.38911 7.75396 7.79166 8.08826 8.62685 8.72108 9.23064 9.35044 9.43385 10.84051 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.002763 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.158610 B =10130.630017 C =10776.336881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.097 0.903 4 C 0.055 3.945 5 O -0.378 6.378 6 C 0.093 3.907 7 C -0.152 4.152 8 C -0.178 4.178 9 C -0.175 4.175 10 N -0.744 5.744 11 C 0.716 3.284 12 O -0.599 6.599 13 N -0.628 5.628 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.114 3.886 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.396 0.604 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.381 0.619 45 H 0.270 0.730 46 H 0.085 0.915 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 -8.122 20.577 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.061 3.939 3 H 0.115 0.885 4 C -0.022 4.022 5 O -0.298 6.298 6 C 0.017 3.983 7 C -0.170 4.170 8 C -0.215 4.215 9 C -0.212 4.212 10 N -0.401 5.401 11 C 0.418 3.582 12 O -0.479 6.479 13 N -0.365 5.365 14 C -0.017 4.017 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.008 4.008 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.231 0.769 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.232 -7.673 20.662 22.042 hybrid contribution 0.603 0.434 -0.794 1.088 sum 0.371 -7.239 19.868 21.149 Atomic orbital electron populations 1.22093 0.95036 1.02648 1.01975 1.20760 0.94832 0.96238 0.82023 0.88470 1.22857 0.97415 0.83978 0.97944 1.87913 1.70293 1.26368 1.45188 1.21980 0.97587 0.90138 0.88623 1.22148 1.03612 0.95065 0.96203 1.23076 0.93682 1.03669 1.01055 1.22984 0.98560 0.98161 1.01524 1.45136 1.72441 1.13790 1.08695 1.15540 0.78416 0.84591 0.79622 1.90872 1.58213 1.14486 1.84303 1.47919 1.67325 1.11040 1.10214 1.21910 0.98025 0.82942 0.98865 1.22587 1.00281 1.00397 0.92091 1.19622 0.80896 0.87699 0.91007 1.86103 1.24263 1.44701 1.84027 1.21414 1.15908 1.13917 1.06398 0.91640 1.25080 0.94806 0.95214 0.98144 1.69715 1.25961 1.18591 1.38717 0.86470 0.79895 0.77832 0.82730 1.20042 1.21117 1.20058 1.23105 1.01297 0.98600 0.77785 0.92401 0.91889 0.91719 0.92642 0.91937 0.92946 0.93313 0.86673 0.88756 0.88596 0.88369 0.88752 0.76942 0.93273 0.92660 0.90840 0.90519 0.76959 0.91972 0.89688 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.29 37.16 0.35 -1.78 16 2 C 0.17 2.24 2.98 -67.93 -0.20 2.03 16 3 H 0.10 1.40 7.58 -51.93 -0.39 1.00 16 4 C 0.06 0.55 5.68 37.16 0.21 0.76 16 5 O -0.38 -4.04 9.20 -35.23 -0.32 -4.36 16 6 C 0.09 0.77 6.22 37.15 0.23 1.01 16 7 C -0.15 -1.23 6.05 -90.62 -0.55 -1.78 16 8 C -0.18 -1.23 10.18 -26.69 -0.27 -1.51 16 9 C -0.18 -1.13 10.25 -26.69 -0.27 -1.40 16 10 N -0.74 -11.84 5.02 -58.67 -0.29 -12.14 16 11 C 0.72 14.97 8.45 -86.92 -0.73 14.24 16 12 O -0.60 -14.69 16.26 5.28 0.09 -14.61 16 13 N -0.63 -13.40 3.33 -176.24 -0.59 -13.99 16 14 C 0.11 1.91 6.15 -3.06 -0.02 1.89 16 15 C -0.12 -2.32 6.13 -24.89 -0.15 -2.47 16 16 C 0.25 6.09 0.87 -89.63 -0.08 6.01 16 17 O -0.58 -15.07 13.16 -35.23 -0.46 -15.53 16 18 C -0.54 -14.11 8.27 -34.44 -0.28 -14.39 16 19 H 0.07 1.67 7.79 -52.49 -0.41 1.27 16 20 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 21 N -0.89 -24.12 10.69 55.43 0.59 -23.53 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.50 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.11 2.82 5.38 -2.54 -0.01 2.80 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.88 7.56 -51.93 -0.39 0.48 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.05 0.35 7.87 -51.93 -0.41 -0.05 16 34 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.40 5.69 7.37 -40.82 -0.30 5.39 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 44 H 0.38 10.13 7.56 45.56 0.34 10.47 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.08 2.37 7.33 -51.93 -0.38 1.99 16 47 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -30.50 382.87 -9.53 -40.03 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -7.40 Total: 15.65 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.89 Total: 7.19 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.29 Total: -49.65 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.70 Total: -34.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.50 -9.53 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593485778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.468 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds