Wall clock time and date at job start Fri Apr 10 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 O 1.42894 * 109.47275 * 54.99684 * 4 2 1 6 6 C 1.42901 * 114.00397 * 180.02562 * 5 4 2 7 7 C 1.52992 * 109.47663 * 179.97438 * 6 5 4 8 8 C 1.53002 * 117.50235 * 243.74403 * 7 6 5 9 9 C 1.53003 * 117.49937 * 175.08187 * 7 6 5 10 10 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 11 11 C 1.34777 * 119.99873 * 85.00531 * 10 2 1 12 12 O 1.21592 * 119.99797 * 359.97438 * 11 10 2 13 13 N 1.34774 * 119.99902 * 179.97438 * 11 10 2 14 14 C 1.47019 * 125.64846 * 359.68989 * 13 11 10 15 15 C 1.54342 * 107.26391 * 178.84715 * 14 13 11 16 16 C 1.55150 * 103.02063 * 338.14249 * 15 14 13 17 17 O 1.42902 * 111.00614 * 277.22895 * 16 15 14 18 18 C 1.50703 * 111.03746 * 153.39701 * 16 15 14 19 19 H 1.07997 * 119.99888 * 6.32659 * 18 16 15 20 20 C 1.37877 * 119.99997 * 186.33369 * 18 16 15 21 21 N 1.31508 * 119.99959 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99831 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47356 * 59.99416 * 22 20 18 24 24 H 1.48499 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46764 * 299.99538 * 22 20 18 26 26 C 1.47426 * 125.64606 * 179.97438 * 13 11 10 27 27 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 28 28 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 29 29 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47159 * 174.99653 * 4 2 1 31 31 H 1.09004 * 109.46848 * 294.99959 * 4 2 1 32 32 H 1.09008 * 109.46905 * 300.00148 * 6 5 4 33 33 H 1.09006 * 109.47370 * 59.99381 * 6 5 4 34 34 H 1.09003 * 115.54950 * 29.42125 * 7 6 5 35 35 H 1.08999 * 117.50010 * 0.02562 * 8 7 6 36 36 H 1.08994 * 117.49699 * 145.01778 * 8 7 6 37 37 H 1.09003 * 117.49956 * 214.98183 * 9 7 6 38 38 H 1.08996 * 117.50077 * 0.02562 * 9 7 6 39 39 H 0.96995 * 120.00050 * 264.72646 * 10 2 1 40 40 H 1.08995 * 109.88426 * 298.39755 * 14 13 11 41 41 H 1.08999 * 109.88168 * 59.56438 * 14 13 11 42 42 H 1.09003 * 110.84775 * 219.66974 * 15 14 13 43 43 H 1.09003 * 110.51067 * 96.45220 * 15 14 13 44 44 H 0.96698 * 114.00174 * 173.64937 * 17 16 15 45 45 H 0.97002 * 119.99935 * 180.02562 * 21 20 18 46 46 H 1.08998 * 110.37024 * 322.92854 * 26 13 11 47 47 H 1.09001 * 110.36638 * 85.14321 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 1.4702 -2.0304 1.3093 6 6 1.8835 -2.7928 2.4451 7 6 1.2152 -4.1684 2.4067 8 6 0.2436 -4.5137 3.5371 9 6 1.6201 -5.1808 3.4801 10 7 2.0182 -0.6906 -1.1963 11 6 2.1470 -0.0182 -2.3572 12 8 1.8575 1.1615 -2.4118 13 7 2.5967 -0.6534 -3.4575 14 6 2.9870 -2.0690 -3.5304 15 6 3.4052 -2.3543 -4.9884 16 6 2.6974 -1.2249 -5.7825 17 8 1.3367 -1.5656 -6.0552 18 6 3.4389 -0.9132 -7.0569 19 1 4.2785 -1.5230 -7.3561 20 6 3.0454 0.1506 -7.8409 21 7 2.0228 0.8929 -7.4767 22 14 3.9649 0.5373 -9.4202 23 1 3.8899 -0.6299 -10.3353 24 1 3.3489 1.7194 -10.0748 25 1 5.3867 0.8296 -9.1063 26 6 2.7842 -0.0423 -4.7860 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1262 -0.7997 1.2055 31 1 1.7516 -0.1585 2.1369 32 1 2.9667 -2.9140 2.4266 33 1 1.5917 -2.2727 3.3575 34 1 0.9877 -4.5531 1.4125 35 1 0.0802 -3.7605 4.3079 36 1 -0.6229 -5.1256 3.2866 37 1 1.6586 -6.2314 3.1922 38 1 2.3624 -4.8666 4.2138 39 1 2.2527 -1.6308 -1.1518 40 1 3.8243 -2.2577 -2.8587 41 1 2.1415 -2.7010 -3.2588 42 1 3.0491 -3.3332 -5.3096 43 1 4.4874 -2.2819 -5.0964 44 1 0.8269 -0.8525 -6.4633 45 1 1.7457 1.6411 -8.0285 46 1 1.9937 0.6810 -4.9859 47 1 3.7610 0.4374 -4.8484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593485778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:50 Heat of formation + Delta-G solvation = -122.936314 kcal Electronic energy + Delta-G solvation = -26717.769875 eV Core-core repulsion = 22900.551935 eV Total energy + Delta-G solvation = -3817.217939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30733 -39.67781 -39.02243 -37.71812 -36.02442 -35.92216 -34.22038 -32.50423 -31.06904 -29.46343 -28.47785 -27.05381 -26.65268 -24.34233 -23.22698 -22.23771 -21.54966 -21.39177 -20.94963 -19.25406 -18.80688 -17.96852 -17.45285 -17.01547 -16.81917 -16.41148 -16.30209 -16.18214 -15.74032 -15.26426 -15.09311 -14.76306 -14.61142 -14.39870 -14.09620 -13.71814 -13.51845 -13.38604 -13.28566 -13.16395 -12.79926 -12.62279 -12.51229 -12.36362 -12.31660 -12.26270 -12.08051 -12.01639 -11.91232 -11.29930 -11.28400 -11.17772 -11.12990 -10.64695 -10.40298 -10.31632 -10.16561 -9.31126 -8.22659 -6.40308 1.44475 1.44563 1.53219 1.71325 2.18532 2.39515 2.53586 2.98490 3.03093 3.12373 3.75524 3.81079 3.95780 4.01196 4.07807 4.10107 4.18565 4.20385 4.34912 4.39393 4.40073 4.48799 4.55407 4.62922 4.66968 4.76036 4.78321 4.80740 4.81623 4.98046 5.04580 5.07809 5.11592 5.26358 5.27931 5.32157 5.33972 5.40014 5.47609 5.61415 5.77181 6.07138 6.22272 6.27179 6.66948 7.10117 7.28898 7.36301 7.61464 8.82324 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.002763 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.158610 B =10130.630017 C =10776.336881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.086 0.914 4 C 0.066 3.934 5 O -0.397 6.397 6 C 0.092 3.908 7 C -0.169 4.169 8 C -0.180 4.180 9 C -0.165 4.165 10 N -0.723 5.723 11 C 0.710 3.290 12 O -0.644 6.644 13 N -0.635 5.635 14 C 0.109 3.891 15 C -0.110 4.110 16 C 0.232 3.768 17 O -0.588 6.588 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.269 1.269 26 C 0.129 3.871 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.407 0.593 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.372 0.628 45 H 0.269 0.731 46 H 0.042 0.958 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -9.774 22.476 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.055 3.945 3 H 0.104 0.896 4 C -0.011 4.011 5 O -0.317 6.317 6 C 0.016 3.984 7 C -0.188 4.188 8 C -0.217 4.217 9 C -0.202 4.202 10 N -0.380 5.380 11 C 0.412 3.588 12 O -0.526 6.526 13 N -0.371 5.371 14 C -0.013 4.013 15 C -0.147 4.147 16 C 0.191 3.809 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.176 4.176 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.194 1.194 26 C 0.005 3.995 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.244 0.756 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.220 0.780 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.014 -9.392 22.612 24.506 hybrid contribution 0.177 0.924 -1.330 1.629 sum 1.191 -8.467 21.282 22.936 Atomic orbital electron populations 1.22014 0.95071 1.02346 1.01542 1.20997 0.94813 0.96249 0.82437 0.89609 1.22742 0.97784 0.83989 0.96615 1.87883 1.70728 1.26619 1.46492 1.22102 0.98129 0.89883 0.88259 1.22148 1.04997 0.95640 0.95973 1.23153 0.93967 1.03933 1.00656 1.23066 0.98395 0.98058 1.00659 1.45036 1.71106 1.14099 1.07762 1.15771 0.78197 0.84248 0.80582 1.90835 1.59992 1.16651 1.85155 1.47875 1.67738 1.12294 1.09219 1.22075 0.99924 0.80891 0.98441 1.22592 1.00584 0.99157 0.92410 1.19871 0.80335 0.89607 0.91046 1.86095 1.25101 1.44381 1.83945 1.21762 1.16232 1.14108 1.07298 0.91210 1.25858 0.95539 0.95132 1.01112 1.69850 1.27156 1.18840 1.39633 0.85500 0.78815 0.77538 0.79121 1.19423 1.21237 1.19391 1.22635 0.98641 0.98043 0.80138 0.89677 0.95461 0.91826 0.91544 0.89289 0.92050 0.92000 0.88205 0.88031 0.88638 0.87911 0.87563 0.75646 0.89348 0.91396 0.89714 0.89179 0.77952 0.92221 0.93893 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.29 71.98 0.67 -3.27 16 2 C 0.16 4.08 2.98 44.99 0.13 4.22 16 3 H 0.09 2.43 7.58 -2.39 -0.02 2.41 16 4 C 0.07 1.12 5.68 71.98 0.41 1.53 16 5 O -0.40 -7.44 9.20 -148.98 -1.37 -8.81 16 6 C 0.09 1.27 6.22 71.98 0.45 1.72 16 7 C -0.17 -2.41 6.05 -10.79 -0.07 -2.47 16 8 C -0.18 -2.14 10.18 30.62 0.31 -1.83 16 9 C -0.16 -1.73 10.25 30.62 0.31 -1.41 16 10 N -0.72 -22.29 5.02 -457.81 -2.30 -24.59 16 11 C 0.71 29.93 8.45 179.06 1.51 31.45 16 12 O -0.64 -32.71 16.26 -4.01 -0.07 -32.77 16 13 N -0.63 -27.08 3.33 -829.77 -2.76 -29.84 16 14 C 0.11 3.68 6.15 86.74 0.53 4.22 16 15 C -0.11 -4.22 6.13 31.79 0.19 -4.02 16 16 C 0.23 11.44 0.87 -10.16 -0.01 11.44 16 17 O -0.59 -30.99 13.16 -148.98 -1.96 -32.95 16 18 C -0.56 -29.28 8.27 25.60 0.21 -29.06 16 19 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 20 C 0.02 1.30 5.29 84.66 0.45 1.75 16 21 N -0.92 -51.14 10.69 21.45 0.23 -50.91 16 22 Si 0.97 42.30 29.54 68.60 2.03 44.32 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.13 6.57 5.38 86.85 0.47 7.04 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.66 7.56 -2.39 -0.02 1.64 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 0.69 7.87 -2.38 -0.02 0.67 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.41 10.81 7.37 -92.71 -0.68 10.13 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.09 3.20 8.03 -2.39 -0.02 3.18 16 44 H 0.37 20.64 7.56 -74.06 -0.56 20.08 16 45 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.04 2.52 7.33 -2.39 -0.02 2.50 16 47 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -68.37 382.87 -0.90 -69.26 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -0.28 Total: 44.99 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.58 Total: 21.29 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -4.83 Total: -105.33 kcal Atomic # 8 Polarization: -71.13 SS G_CDS: -3.40 Total: -74.53 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.37 -0.90 -69.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593485778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.673 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds