Wall clock time and date at job start Fri Apr 10 2020 18:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47132 * 2 1 4 4 O 1.42897 * 109.47606 * 239.98993 * 2 1 3 5 5 C 1.53007 * 109.46941 * 119.99185 * 2 1 3 6 6 N 1.46495 * 109.47178 * 184.99991 * 5 2 1 7 7 C 1.34784 * 119.99652 * 81.42180 * 6 5 2 8 8 O 1.21352 * 119.99603 * 185.34996 * 7 6 5 9 9 C 1.49446 * 120.00324 * 5.34972 * 7 6 5 10 10 O 1.21356 * 119.99614 * 4.10345 * 9 7 6 11 11 N 1.34774 * 119.99919 * 184.09928 * 9 7 6 12 12 C 1.46502 * 119.99870 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47374 * 179.72604 * 12 11 9 14 14 C 1.53009 * 109.47000 * 300.00214 * 13 12 11 15 15 C 1.53007 * 109.47139 * 59.99735 * 13 12 11 16 16 C 1.50693 * 109.47444 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00061 * 356.47868 * 16 13 12 18 18 C 1.37882 * 120.00174 * 176.48399 * 16 13 12 19 19 N 1.31508 * 120.00095 * 5.91991 * 18 16 13 20 20 Si 1.86802 * 119.99833 * 185.92724 * 18 16 13 21 21 H 1.48497 * 109.47467 * 84.99881 * 20 18 16 22 22 H 1.48509 * 109.46787 * 204.99667 * 20 18 16 23 23 H 1.48493 * 109.47211 * 324.99346 * 20 18 16 24 24 C 1.46500 * 120.00097 * 261.41936 * 6 5 2 25 25 C 1.52999 * 117.49710 * 201.26202 * 24 6 5 26 26 C 1.53003 * 117.49615 * 132.64039 * 24 6 5 27 27 H 1.08999 * 109.47637 * 300.00987 * 1 2 3 28 28 H 1.08998 * 109.46739 * 60.00839 * 1 2 3 29 29 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 30 30 H 0.96703 * 113.99840 * 300.01036 * 4 2 1 31 31 H 1.09000 * 109.46806 * 64.99568 * 5 2 1 32 32 H 1.09000 * 109.47224 * 305.00706 * 5 2 1 33 33 H 0.96996 * 120.00379 * 359.72434 * 11 9 7 34 34 H 1.09003 * 109.46973 * 299.72774 * 12 11 9 35 35 H 1.09001 * 109.47088 * 59.72080 * 12 11 9 36 36 H 1.08990 * 109.46943 * 64.63244 * 14 13 12 37 37 H 1.09005 * 109.46709 * 184.63585 * 14 13 12 38 38 H 1.09004 * 109.46920 * 304.63062 * 14 13 12 39 39 H 1.09003 * 109.46833 * 60.00059 * 15 13 12 40 40 H 1.08996 * 109.46980 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.46797 * 300.00313 * 15 13 12 42 42 H 0.96996 * 120.00654 * 180.02562 * 19 18 16 43 43 H 1.08996 * 115.55165 * 346.97360 * 24 6 5 44 44 H 1.08994 * 117.50116 * 0.02562 * 25 24 6 45 45 H 1.09001 * 117.49605 * 145.01928 * 25 24 6 46 46 H 1.08997 * 117.49900 * 214.97874 * 26 24 6 47 47 H 1.08998 * 117.49812 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1666 5 6 2.0400 -0.7211 1.2494 6 7 3.4999 -0.6178 1.3112 7 6 4.0765 0.5003 1.7952 8 8 5.2828 0.6262 1.7569 9 6 3.2301 1.5849 2.3789 10 8 2.0314 1.4282 2.4854 11 7 3.7981 2.7369 2.7871 12 6 2.9685 3.7999 3.3599 13 6 3.8541 4.9867 3.7445 14 6 4.8904 4.5365 4.7763 15 6 4.5701 5.5136 2.4991 16 6 3.0009 6.0799 4.3343 17 1 1.9276 5.9655 4.3735 18 6 3.5903 7.2263 4.8237 19 7 4.8824 7.4179 4.6714 20 14 2.5534 8.5072 5.7032 21 1 2.4177 8.1364 7.1347 22 1 3.2105 9.8347 5.5958 23 1 1.2078 8.5691 5.0781 24 6 4.3333 -1.7296 0.8469 25 6 5.7698 -1.8016 1.3686 26 6 5.5023 -1.3962 -0.0823 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.7210 -1.5954 -1.2326 31 1 1.7515 -1.7713 1.2059 32 1 1.6052 -0.2616 2.1371 33 1 4.7567 2.8605 2.7058 34 1 2.2303 4.1206 2.6248 35 1 2.4585 3.4245 4.2471 36 1 5.5595 3.8049 4.3238 37 1 5.4674 5.3984 5.1115 38 1 4.3822 4.0858 5.6288 39 1 3.8318 5.8342 1.7641 40 1 5.2013 6.3588 2.7733 41 1 5.1873 4.7226 2.0731 42 1 5.2972 8.2241 5.0160 43 1 3.8104 -2.6712 0.6798 44 1 6.0946 -1.0220 2.0576 45 1 6.1921 -2.7908 1.5451 46 1 5.7487 -2.1187 -0.8603 47 1 5.6510 -0.3497 -0.3484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594622958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:59 Heat of formation + Delta-G solvation = -78.600723 kcal Electronic energy + Delta-G solvation = -27568.171259 eV Core-core repulsion = 23752.875856 eV Total energy + Delta-G solvation = -3815.295404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00292 -38.85477 -37.90947 -36.53209 -36.35632 -34.15060 -33.23527 -31.05020 -30.91398 -26.80168 -26.12323 -25.74519 -25.32780 -24.21966 -22.40283 -21.94513 -21.70862 -19.67126 -18.80783 -17.97967 -16.73244 -16.37175 -16.15334 -15.85026 -15.61975 -15.50634 -14.95962 -14.71941 -14.57424 -14.08661 -13.78042 -13.67311 -13.24947 -12.95961 -12.79815 -12.56672 -12.35405 -12.21171 -12.00076 -11.74285 -11.44273 -11.33733 -11.21914 -10.98042 -10.89343 -10.74541 -10.73330 -10.43413 -10.40934 -10.29710 -10.20807 -9.68234 -9.46537 -9.06105 -8.84396 -8.66729 -8.41563 -8.36390 -6.05070 -4.15499 1.57958 2.40604 3.27125 3.34016 3.34309 3.36490 3.58645 3.90555 4.27792 4.36559 4.57381 4.69290 4.76312 4.81107 4.94699 5.00560 5.05112 5.21375 5.22957 5.44357 5.63496 5.68127 5.75802 5.89388 5.99608 6.03052 6.07780 6.19584 6.26516 6.44184 6.52445 6.62734 6.80568 6.82915 6.91682 6.97956 7.00323 7.30581 7.51166 7.51741 7.58870 7.67473 7.94393 7.98155 8.10242 8.29125 8.38137 8.84429 9.50245 10.96300 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.003420 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.465058 B = 8186.008772 C = 9100.438283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 H 0.099 0.901 4 O -0.559 6.559 5 C 0.060 3.940 6 N -0.553 5.553 7 C 0.505 3.495 8 O -0.514 6.514 9 C 0.496 3.504 10 O -0.532 6.532 11 N -0.677 5.677 12 C 0.128 3.872 13 C 0.056 3.944 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.508 4.508 17 H 0.058 0.942 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.072 3.928 25 C -0.191 4.191 26 C -0.176 4.176 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.367 0.633 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.411 0.589 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.009 0.991 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.007 0.993 42 H 0.261 0.739 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -18.506 -7.832 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.117 0.883 4 O -0.364 6.364 5 C -0.062 4.062 6 N -0.283 5.283 7 C 0.288 3.712 8 O -0.390 6.390 9 C 0.276 3.724 10 O -0.411 6.411 11 N -0.328 5.328 12 C 0.007 3.993 13 C 0.055 3.945 14 C -0.193 4.193 15 C -0.190 4.190 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.032 4.032 25 C -0.229 4.229 26 C -0.214 4.214 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.213 0.787 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.297 -17.771 -7.820 19.693 hybrid contribution -0.429 0.167 0.516 0.692 sum -3.727 -17.604 -7.304 19.420 Atomic orbital electron populations 1.22368 0.95532 1.02203 1.03544 1.22316 0.93401 0.97114 0.84000 0.88295 1.86662 1.77197 1.28374 1.44155 1.23143 0.78655 1.01634 1.02788 1.47043 1.07107 1.14355 1.59821 1.20478 0.88144 0.83397 0.79155 1.90659 1.14235 1.78491 1.55627 1.20005 0.87924 0.83965 0.80495 1.90545 1.14654 1.79171 1.56772 1.46250 1.13341 1.14529 1.58638 1.21963 0.93818 0.86599 0.96969 1.18384 0.92694 0.90331 0.93093 1.21853 0.98861 1.00320 0.98234 1.21868 0.99552 1.00810 0.96771 1.20926 0.93055 1.00973 1.39741 0.92359 1.24878 0.95012 0.97788 0.95748 1.69807 1.09793 1.27028 1.45445 0.86585 0.80426 0.80647 0.80190 1.20604 1.21309 1.19957 1.21730 0.87008 0.90102 1.04314 1.23649 0.96790 1.03553 0.98866 1.23195 1.01763 1.03197 0.93272 0.90566 0.91750 0.92563 0.78702 0.90653 0.84678 0.75174 0.91976 0.91924 0.97160 0.89292 0.95518 0.95352 0.89492 0.97372 0.92887 0.85369 0.85610 0.89045 0.88740 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.53 37.16 0.35 -1.29 16 2 C 0.09 1.02 3.33 -26.73 -0.09 0.93 16 3 H 0.10 1.42 7.30 -51.93 -0.38 1.04 16 4 O -0.56 -6.00 13.29 -35.23 -0.47 -6.47 16 5 C 0.06 0.64 4.69 -4.04 -0.02 0.62 16 6 N -0.55 -6.98 2.82 -166.61 -0.47 -7.45 16 7 C 0.50 7.87 7.37 -11.58 -0.09 7.79 16 8 O -0.51 -8.74 12.10 5.49 0.07 -8.67 16 9 C 0.50 8.40 7.44 -11.59 -0.09 8.31 16 10 O -0.53 -9.13 12.36 5.49 0.07 -9.06 16 11 N -0.68 -12.26 4.98 -60.73 -0.30 -12.56 16 12 C 0.13 2.60 4.50 -4.04 -0.02 2.59 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -3.06 8.04 37.16 0.30 -2.76 16 15 C -0.13 -3.01 8.11 37.16 0.30 -2.70 16 16 C -0.51 -13.02 8.01 -34.44 -0.28 -13.29 16 17 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 18 C 0.07 1.75 5.11 -17.82 -0.09 1.66 16 19 N -0.88 -23.38 9.37 55.43 0.52 -22.86 16 20 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 C 0.07 0.78 6.63 -67.93 -0.45 0.33 16 25 C -0.19 -2.17 9.64 -26.73 -0.26 -2.43 16 26 C -0.18 -2.00 9.82 -26.73 -0.26 -2.26 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.37 2.37 9.05 45.56 0.41 2.78 16 31 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 32 H 0.14 1.68 5.16 -52.18 -0.27 1.41 16 33 H 0.41 7.45 5.67 -40.82 -0.23 7.22 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.01 0.20 7.00 -51.93 -0.36 -0.17 16 37 H 0.09 2.24 5.91 -51.93 -0.31 1.93 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.19 6.13 -51.93 -0.32 1.87 16 41 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 42 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 43 H 0.13 0.99 8.00 -51.93 -0.42 0.57 16 44 H 0.13 1.79 5.55 -51.93 -0.29 1.50 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.42 7.24 -51.93 -0.38 1.04 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -27.96 369.63 -7.45 -35.41 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.65 Total: 12.03 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.76 Total: -1.32 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.25 Total: -42.87 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.33 Total: -24.20 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.96 -7.45 -35.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594622958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.190 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds