Wall clock time and date at job start Fri Apr 10 2020 18:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47132 * 2 1 4 4 O 1.42897 * 109.47606 * 239.98993 * 2 1 3 5 5 C 1.53007 * 109.46941 * 119.99185 * 2 1 3 6 6 N 1.46495 * 109.47178 * 184.99991 * 5 2 1 7 7 C 1.34784 * 119.99652 * 81.42180 * 6 5 2 8 8 O 1.21352 * 119.99603 * 185.34996 * 7 6 5 9 9 C 1.49446 * 120.00324 * 5.34972 * 7 6 5 10 10 O 1.21356 * 119.99614 * 4.10345 * 9 7 6 11 11 N 1.34774 * 119.99919 * 184.09928 * 9 7 6 12 12 C 1.46502 * 119.99870 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47374 * 179.72604 * 12 11 9 14 14 C 1.53009 * 109.47000 * 300.00214 * 13 12 11 15 15 C 1.53007 * 109.47139 * 59.99735 * 13 12 11 16 16 C 1.50693 * 109.47444 * 180.02562 * 13 12 11 17 17 H 1.08005 * 120.00061 * 356.47868 * 16 13 12 18 18 C 1.37882 * 120.00174 * 176.48399 * 16 13 12 19 19 N 1.31508 * 120.00095 * 5.91991 * 18 16 13 20 20 Si 1.86802 * 119.99833 * 185.92724 * 18 16 13 21 21 H 1.48497 * 109.47467 * 84.99881 * 20 18 16 22 22 H 1.48509 * 109.46787 * 204.99667 * 20 18 16 23 23 H 1.48493 * 109.47211 * 324.99346 * 20 18 16 24 24 C 1.46500 * 120.00097 * 261.41936 * 6 5 2 25 25 C 1.52999 * 117.49710 * 201.26202 * 24 6 5 26 26 C 1.53003 * 117.49615 * 132.64039 * 24 6 5 27 27 H 1.08999 * 109.47637 * 300.00987 * 1 2 3 28 28 H 1.08998 * 109.46739 * 60.00839 * 1 2 3 29 29 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 30 30 H 0.96703 * 113.99840 * 300.01036 * 4 2 1 31 31 H 1.09000 * 109.46806 * 64.99568 * 5 2 1 32 32 H 1.09000 * 109.47224 * 305.00706 * 5 2 1 33 33 H 0.96996 * 120.00379 * 359.72434 * 11 9 7 34 34 H 1.09003 * 109.46973 * 299.72774 * 12 11 9 35 35 H 1.09001 * 109.47088 * 59.72080 * 12 11 9 36 36 H 1.08990 * 109.46943 * 64.63244 * 14 13 12 37 37 H 1.09005 * 109.46709 * 184.63585 * 14 13 12 38 38 H 1.09004 * 109.46920 * 304.63062 * 14 13 12 39 39 H 1.09003 * 109.46833 * 60.00059 * 15 13 12 40 40 H 1.08996 * 109.46980 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.46797 * 300.00313 * 15 13 12 42 42 H 0.96996 * 120.00654 * 180.02562 * 19 18 16 43 43 H 1.08996 * 115.55165 * 346.97360 * 24 6 5 44 44 H 1.08994 * 117.50116 * 0.02562 * 25 24 6 45 45 H 1.09001 * 117.49605 * 145.01928 * 25 24 6 46 46 H 1.08997 * 117.49900 * 214.97874 * 26 24 6 47 47 H 1.08998 * 117.49812 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1666 5 6 2.0400 -0.7211 1.2494 6 7 3.4999 -0.6178 1.3112 7 6 4.0765 0.5003 1.7952 8 8 5.2828 0.6262 1.7569 9 6 3.2301 1.5849 2.3789 10 8 2.0314 1.4282 2.4854 11 7 3.7981 2.7369 2.7871 12 6 2.9685 3.7999 3.3599 13 6 3.8541 4.9867 3.7445 14 6 4.8904 4.5365 4.7763 15 6 4.5701 5.5136 2.4991 16 6 3.0009 6.0799 4.3343 17 1 1.9276 5.9655 4.3735 18 6 3.5903 7.2263 4.8237 19 7 4.8824 7.4179 4.6714 20 14 2.5534 8.5072 5.7032 21 1 2.4177 8.1364 7.1347 22 1 3.2105 9.8347 5.5958 23 1 1.2078 8.5691 5.0781 24 6 4.3333 -1.7296 0.8469 25 6 5.7698 -1.8016 1.3686 26 6 5.5023 -1.3962 -0.0823 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.7210 -1.5954 -1.2326 31 1 1.7515 -1.7713 1.2059 32 1 1.6052 -0.2616 2.1371 33 1 4.7567 2.8605 2.7058 34 1 2.2303 4.1206 2.6248 35 1 2.4585 3.4245 4.2471 36 1 5.5595 3.8049 4.3238 37 1 5.4674 5.3984 5.1115 38 1 4.3822 4.0858 5.6288 39 1 3.8318 5.8342 1.7641 40 1 5.2013 6.3588 2.7733 41 1 5.1873 4.7226 2.0731 42 1 5.2972 8.2241 5.0160 43 1 3.8104 -2.6712 0.6798 44 1 6.0946 -1.0220 2.0576 45 1 6.1921 -2.7908 1.5451 46 1 5.7487 -2.1187 -0.8603 47 1 5.6510 -0.3497 -0.3484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594622958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:58 Heat of formation + Delta-G solvation = -97.689273 kcal Electronic energy + Delta-G solvation = -27568.999001 eV Core-core repulsion = 23752.875856 eV Total energy + Delta-G solvation = -3816.123145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18167 -40.16715 -38.86890 -38.16893 -37.36472 -35.36291 -34.66706 -32.76261 -31.87094 -28.15384 -27.61533 -27.38803 -27.03933 -25.53749 -23.28064 -22.95513 -22.74533 -20.98221 -20.53849 -19.12873 -17.98172 -17.70233 -17.33963 -17.27752 -16.75618 -16.54598 -16.51009 -16.13689 -15.74681 -15.25599 -14.96147 -14.90000 -14.76060 -14.35938 -14.14853 -14.08093 -13.36731 -13.26935 -13.21199 -13.10102 -12.84475 -12.70762 -12.67176 -12.60245 -12.31756 -12.26361 -12.13120 -11.89611 -11.69460 -11.52914 -11.31131 -11.25571 -11.11403 -10.77088 -10.39496 -10.27886 -10.13875 -9.42324 -8.02657 -6.18793 0.30589 1.26526 1.44701 1.47340 1.54694 2.06958 2.37949 2.49848 3.00443 3.21139 3.28800 3.53201 3.82975 3.88381 4.00030 4.11052 4.16425 4.23305 4.32707 4.46021 4.46133 4.65427 4.66426 4.77029 4.85924 4.89668 4.94222 5.01181 5.03463 5.06287 5.14898 5.16327 5.26237 5.30276 5.35467 5.47531 5.60727 5.61187 5.66605 5.90430 6.08713 6.16859 6.26786 6.40017 6.69773 6.85159 6.92363 6.97167 7.49072 8.96693 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.003420 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.465058 B = 8186.008772 C = 9100.438283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 H 0.058 0.942 4 O -0.572 6.572 5 C 0.059 3.941 6 N -0.544 5.544 7 C 0.500 3.500 8 O -0.535 6.535 9 C 0.495 3.505 10 O -0.534 6.534 11 N -0.682 5.682 12 C 0.146 3.854 13 C 0.050 3.950 14 C -0.124 4.124 15 C -0.122 4.122 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.027 3.973 19 N -0.901 5.901 20 Si 0.948 3.052 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.272 1.272 24 C 0.075 3.925 25 C -0.196 4.196 26 C -0.179 4.179 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.388 0.612 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.410 0.590 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.260 0.740 43 H 0.173 0.827 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 -21.245 -8.489 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.076 0.924 4 O -0.380 6.380 5 C -0.062 4.062 6 N -0.274 5.274 7 C 0.283 3.717 8 O -0.413 6.413 9 C 0.276 3.724 10 O -0.413 6.413 11 N -0.333 5.333 12 C 0.023 3.977 13 C 0.049 3.951 14 C -0.182 4.182 15 C -0.179 4.179 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.173 4.173 19 N -0.539 5.539 20 Si 0.775 3.225 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.028 4.028 25 C -0.233 4.233 26 C -0.218 4.218 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.238 0.762 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.248 0.752 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.190 0.810 44 H 0.112 0.888 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.373 -20.556 -8.493 22.667 hybrid contribution -0.115 0.941 0.657 1.154 sum -4.487 -19.615 -7.836 21.594 Atomic orbital electron populations 1.22295 0.93962 1.03984 1.02694 1.22074 0.94453 0.95279 0.84431 0.92409 1.86625 1.77490 1.30179 1.43706 1.23226 0.77192 1.04135 1.01654 1.47190 1.08284 1.13723 1.58181 1.20219 0.87650 0.83998 0.79844 1.90672 1.14789 1.78975 1.56832 1.20362 0.88125 0.83955 0.79955 1.90559 1.14888 1.79321 1.56535 1.46103 1.13013 1.14737 1.59476 1.21538 0.93214 0.86366 0.96585 1.18385 0.92853 0.90811 0.93044 1.21695 0.98722 0.99612 0.98193 1.21708 0.99161 1.00406 0.96664 1.21223 0.93178 1.01985 1.40074 0.92903 1.25502 0.95957 0.99440 0.96405 1.69931 1.10779 1.27316 1.45882 0.85727 0.79114 0.78538 0.79151 1.20356 1.21247 1.19720 1.22212 0.86880 0.90531 1.03182 1.23593 0.97688 1.03947 0.98087 1.23161 1.02619 1.01916 0.94081 0.91777 0.92239 0.89450 0.76213 0.86206 0.86410 0.75231 0.92718 0.92476 0.95411 0.91740 0.95652 0.95827 0.91926 0.95556 0.93051 0.80958 0.88828 0.86217 0.86009 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.53 71.98 0.69 -2.12 16 2 C 0.10 2.02 3.33 30.60 0.10 2.12 16 3 H 0.06 1.68 7.30 -2.39 -0.02 1.66 16 4 O -0.57 -10.77 13.29 -148.98 -1.98 -12.75 16 5 C 0.06 1.11 4.69 86.38 0.41 1.52 16 6 N -0.54 -12.74 2.82 -799.39 -2.26 -15.00 16 7 C 0.50 15.50 7.37 87.27 0.64 16.15 16 8 O -0.53 -18.45 12.10 -3.25 -0.04 -18.49 16 9 C 0.49 16.88 7.44 87.27 0.65 17.53 16 10 O -0.53 -18.33 12.36 -3.27 -0.04 -18.37 16 11 N -0.68 -25.03 4.98 -464.42 -2.31 -27.34 16 12 C 0.15 6.00 4.50 86.38 0.39 6.39 16 13 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 14 C -0.12 -5.71 8.04 71.99 0.58 -5.13 16 15 C -0.12 -5.62 8.11 71.98 0.58 -5.04 16 16 C -0.53 -27.30 8.01 25.60 0.20 -27.10 16 17 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 18 C 0.03 1.40 5.11 84.66 0.43 1.83 16 19 N -0.90 -48.49 9.37 21.45 0.20 -48.29 16 20 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 C 0.07 1.36 6.63 44.99 0.30 1.66 16 25 C -0.20 -4.05 9.64 30.59 0.30 -3.76 16 26 C -0.18 -3.73 9.82 30.60 0.30 -3.43 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.39 3.38 9.05 -74.06 -0.67 2.71 16 31 H 0.12 1.22 7.91 -2.39 -0.02 1.20 16 32 H 0.12 2.73 5.16 -6.35 -0.03 2.70 16 33 H 0.41 15.09 5.67 -92.71 -0.53 14.56 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.13 7.00 -2.39 -0.02 1.11 16 37 H 0.06 3.30 5.91 -2.38 -0.01 3.28 16 38 H 0.02 1.11 8.14 -2.38 -0.02 1.10 16 39 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 3.21 6.13 -2.39 -0.01 3.20 16 41 H 0.03 1.08 6.86 -2.39 -0.02 1.06 16 42 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 43 H 0.17 1.65 8.00 -2.39 -0.02 1.63 16 44 H 0.09 2.64 5.55 -2.39 -0.01 2.62 16 45 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 1.85 7.24 -2.39 -0.02 1.83 16 Total: -1.00 -62.22 369.63 0.92 -61.30 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.22 Total: 31.89 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 5.54 Total: 2.90 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -4.37 Total: -90.63 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.06 Total: -49.61 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -62.22 0.92 -61.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594622958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.386 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds