Wall clock time and date at job start Fri Apr 10 2020 18:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.46821 * 2 1 4 4 C 1.34229 * 117.00006 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99800 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00264 * 180.02562 * 4 3 2 7 7 N 1.46496 * 109.47398 * 180.02562 * 6 4 3 8 8 C 1.46505 * 119.99896 * 270.00022 * 7 6 4 9 9 C 1.34777 * 120.00271 * 89.99557 * 7 6 4 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 7 6 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 7 6 12 12 N 1.46899 * 109.47107 * 180.02562 * 11 9 7 13 13 C 1.46847 * 111.00044 * 66.04660 * 12 11 9 14 14 C 1.53032 * 109.52682 * 174.15899 * 13 12 11 15 15 C 1.53124 * 109.27817 * 59.17958 * 14 13 12 16 16 C 1.53115 * 109.15950 * 302.35012 * 15 14 13 17 17 H 1.09005 * 109.50024 * 297.71177 * 16 15 14 18 18 C 1.50695 * 109.50256 * 177.59334 * 16 15 14 19 19 H 1.07995 * 120.00334 * 239.99577 * 18 16 15 20 20 C 1.37875 * 119.99982 * 59.99782 * 18 16 15 21 21 N 1.31512 * 120.00286 * 0.02562 * 20 18 16 22 22 Si 1.86810 * 119.99971 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46720 * 60.00311 * 22 20 18 24 24 H 1.48499 * 109.46801 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47206 * 299.99879 * 22 20 18 26 26 C 1.46842 * 111.00224 * 301.83739 * 12 11 9 27 27 H 1.09006 * 109.47156 * 299.99454 * 1 2 3 28 28 H 1.08997 * 109.47484 * 59.99731 * 1 2 3 29 29 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47021 * 240.01082 * 2 1 3 31 31 H 1.08997 * 109.47484 * 120.00269 * 2 1 3 32 32 H 1.09000 * 109.47002 * 60.00099 * 6 4 3 33 33 H 1.09004 * 109.46952 * 299.99760 * 6 4 3 34 34 H 1.08999 * 109.47333 * 269.99341 * 8 7 6 35 35 H 1.08997 * 109.47024 * 30.00155 * 8 7 6 36 36 H 1.09000 * 109.46875 * 149.99915 * 8 7 6 37 37 H 1.09002 * 109.47152 * 60.00245 * 11 9 7 38 38 H 1.09001 * 109.46980 * 300.00345 * 11 9 7 39 39 H 1.09003 * 109.46359 * 294.18318 * 13 12 11 40 40 H 1.09005 * 109.46019 * 54.14014 * 13 12 11 41 41 H 1.08997 * 109.50678 * 179.11835 * 14 13 12 42 42 H 1.08997 * 109.50578 * 299.23922 * 14 13 12 43 43 H 1.09004 * 109.52120 * 62.25013 * 15 14 13 44 44 H 1.09001 * 109.52124 * 182.44015 * 15 14 13 45 45 H 0.97000 * 120.00630 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46292 * 305.85719 * 26 12 11 47 47 H 1.09008 * 109.46217 * 65.82382 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3835 2.8609 -0.0014 8 6 6.1162 2.8216 1.2667 9 6 6.0555 2.8265 -1.1691 10 8 5.4491 2.8594 -2.2189 11 6 7.5605 2.7471 -1.1705 12 7 8.0483 2.7232 -2.5559 13 6 7.7648 3.9936 -3.2357 14 6 8.4122 3.9874 -4.6223 15 6 7.8540 2.8163 -5.4356 16 6 8.1195 1.5098 -4.6827 17 1 9.1945 1.3605 -4.5807 18 6 7.5211 0.3576 -5.4478 19 1 6.7632 -0.2598 -4.9889 20 6 7.9413 0.0917 -6.7338 21 7 8.8646 0.8433 -7.2925 22 14 7.2000 -1.3370 -7.6820 23 1 5.7352 -1.1339 -7.8179 24 1 7.8166 -1.4087 -9.0310 25 1 7.4585 -2.6034 -6.9511 26 6 7.4807 1.5879 -3.2942 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.5851 3.4691 0.8905 33 1 3.5842 3.4701 -0.8896 34 1 6.3517 3.8381 1.5819 35 1 5.5017 2.3387 2.0265 36 1 7.0403 2.2588 1.1351 37 1 7.8769 1.8387 -0.6578 38 1 7.9706 3.6162 -0.6562 39 1 6.6868 4.1178 -3.3387 40 1 8.1707 4.8178 -2.6490 41 1 8.1885 4.9242 -5.1326 42 1 9.4917 3.8772 -4.5194 43 1 6.7804 2.9464 -5.5719 44 1 8.3441 2.7821 -6.4086 45 1 9.1605 0.6560 -8.1971 46 1 7.6801 0.6646 -2.7502 47 1 6.4039 1.7233 -3.3971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:04 Heat of formation + Delta-G solvation = -133.385373 kcal Electronic energy + Delta-G solvation = -27384.935495 eV Core-core repulsion = 23567.264450 eV Total energy + Delta-G solvation = -3817.671044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93564 -41.14820 -39.12832 -37.80700 -36.51233 -35.50738 -33.59000 -32.81597 -31.67371 -30.61443 -28.28657 -26.98849 -26.90044 -24.48590 -23.69344 -23.13983 -22.33481 -20.65049 -20.15573 -19.02969 -18.47895 -18.30962 -17.82636 -17.49338 -17.14447 -16.67636 -16.29001 -15.84965 -15.67713 -15.43953 -15.00530 -14.85536 -14.58824 -14.22687 -14.05833 -13.74469 -13.70693 -13.62836 -13.41118 -13.29397 -13.10878 -12.91908 -12.84455 -12.78620 -12.58440 -12.54517 -12.32599 -11.84064 -11.77909 -11.64912 -11.61922 -11.41545 -11.38078 -10.88475 -10.69002 -10.39620 -9.85760 -9.01703 -8.10377 -6.24259 1.04895 1.22767 1.35411 1.38051 1.45915 1.71808 2.08897 2.39815 3.06414 3.15190 3.58628 3.66312 3.91200 4.01228 4.11705 4.14206 4.19722 4.23285 4.26217 4.30252 4.38404 4.51442 4.55078 4.74385 4.75867 4.76409 4.79676 4.86289 4.95510 4.95992 5.06318 5.07945 5.15657 5.20777 5.33832 5.38823 5.41438 5.50583 5.60540 5.92843 6.05932 6.11785 6.18054 6.33321 6.44677 6.61247 6.86388 7.09850 7.42409 8.94213 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.004115 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.707801 B = 6802.098296 C = 8621.019114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.440 3.560 5 O -0.538 6.538 6 C 0.124 3.876 7 N -0.604 5.604 8 C 0.072 3.928 9 C 0.479 3.521 10 O -0.567 6.567 11 C 0.040 3.960 12 N -0.521 5.521 13 C 0.057 3.943 14 C -0.109 4.109 15 C -0.100 4.100 16 C 0.057 3.943 17 H -0.002 1.002 18 C -0.540 4.540 19 H 0.038 0.962 20 C 0.017 3.983 21 N -0.912 5.912 22 Si 0.953 3.047 23 H -0.277 1.277 24 H -0.275 1.275 25 H -0.271 1.271 26 C 0.069 3.931 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.034 0.966 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.010 0.990 44 H 0.059 0.941 45 H 0.262 0.738 46 H 0.037 0.963 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 7.564 22.556 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.282 3.718 5 O -0.427 6.427 6 C -0.001 4.001 7 N -0.339 5.339 8 C -0.069 4.069 9 C 0.268 3.732 10 O -0.446 6.446 11 C -0.092 4.092 12 N -0.243 5.243 13 C -0.070 4.070 14 C -0.147 4.147 15 C -0.139 4.139 16 C 0.038 3.962 17 H 0.016 0.984 18 C -0.579 4.579 19 H 0.056 0.944 20 C -0.182 4.182 21 N -0.551 5.551 22 Si 0.778 3.222 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.196 1.196 26 C -0.058 4.058 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.052 0.948 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.919 7.228 21.852 25.475 hybrid contribution -1.198 -1.407 -1.027 2.114 sum -12.116 5.821 20.825 24.786 Atomic orbital electron populations 1.21812 0.89916 1.04384 1.03944 1.23246 0.97418 0.79416 1.01957 1.86488 1.23943 1.33488 1.83699 1.25140 0.80872 0.94371 0.71389 1.90680 1.61262 1.44420 1.46377 1.21141 0.81106 0.89104 1.08793 1.47992 1.05065 1.72815 1.08007 1.22179 0.97518 1.04274 0.82936 1.22879 0.92921 0.74352 0.83040 1.90684 1.71193 1.50310 1.32412 1.22607 0.87299 1.06706 0.92553 1.62387 1.56477 1.03832 1.01562 1.22155 0.98745 0.90970 0.95126 1.21565 0.99921 0.97926 0.95243 1.21411 0.96850 0.95212 1.00383 1.18534 0.94172 0.93092 0.90383 0.98377 1.21446 1.22279 1.14232 0.99931 0.94389 1.25685 0.95368 0.98914 0.98240 1.70010 1.30507 1.39795 1.14827 0.85709 0.78551 0.79969 0.78001 1.20235 1.19967 1.19635 1.22154 0.97583 0.91034 0.95058 0.90198 0.91698 0.88408 0.93240 0.90805 0.81223 0.86575 0.88566 0.90066 0.90109 0.86907 0.83866 0.94793 0.88684 0.91321 0.92503 0.97156 0.92250 0.92871 0.94441 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.36 -8.40 10.22 -51.41 -0.53 -8.92 16 4 C 0.44 11.53 8.02 71.24 0.57 12.10 16 5 O -0.54 -18.44 16.18 21.96 0.36 -18.08 16 6 C 0.12 2.37 6.00 85.63 0.51 2.88 16 7 N -0.60 -12.92 2.36 -851.13 -2.01 -14.93 16 8 C 0.07 0.83 10.24 127.77 1.31 2.14 16 9 C 0.48 14.64 7.09 87.66 0.62 15.26 16 10 O -0.57 -23.28 11.20 -3.02 -0.03 -23.32 16 11 C 0.04 1.09 4.41 85.56 0.38 1.47 16 12 N -0.52 -20.04 4.86 -900.92 -4.38 -24.42 16 13 C 0.06 2.11 5.09 86.32 0.44 2.55 16 14 C -0.11 -4.55 6.09 30.65 0.19 -4.36 16 15 C -0.10 -5.35 5.02 30.67 0.15 -5.20 16 16 C 0.06 3.23 2.26 -11.49 -0.03 3.20 16 17 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 18 C -0.54 -33.41 8.56 25.60 0.22 -33.19 16 19 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 20 C 0.02 1.01 5.30 84.65 0.45 1.46 16 21 N -0.91 -55.99 11.35 21.45 0.24 -55.75 16 22 Si 0.95 47.10 29.54 68.60 2.03 49.13 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 26 C 0.07 3.41 4.20 86.33 0.36 3.77 16 27 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 1.22 8.13 -2.38 -0.02 1.20 16 31 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.17 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.12 2.52 7.42 -2.39 -0.02 2.51 16 34 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 36 H 0.08 0.94 6.44 -2.39 -0.02 0.92 16 37 H 0.11 2.87 7.40 -2.39 -0.02 2.86 16 38 H 0.14 2.62 8.03 -2.39 -0.02 2.60 16 39 H 0.03 1.38 6.00 -2.39 -0.01 1.37 16 40 H 0.09 2.69 8.06 -2.38 -0.02 2.67 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 44 H 0.06 3.48 6.15 -2.39 -0.01 3.47 16 45 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 47 H 0.04 2.08 5.36 -2.38 -0.01 2.07 16 Total: -1.00 -84.00 372.40 2.99 -81.01 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.94 Total: 12.81 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.36 Total: 2.46 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -6.14 Total: -95.10 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.20 Total: -50.32 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -84.00 2.99 -81.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.373 kcal (2) G-P(sol) polarization free energy of solvation -83.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds