Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47079 * 2 1 4 4 C 1.34229 * 116.99951 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00077 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00424 * 179.97438 * 4 3 2 7 7 N 1.46499 * 109.47349 * 180.02562 * 6 4 3 8 8 C 1.46499 * 120.00225 * 89.99630 * 7 6 4 9 9 C 1.34780 * 119.99546 * 270.00192 * 7 6 4 10 10 O 1.21279 * 120.00031 * 359.97438 * 9 7 6 11 11 C 1.50699 * 119.99563 * 180.02562 * 9 7 6 12 12 N 1.46903 * 109.47083 * 179.97438 * 11 9 7 13 13 C 1.46849 * 110.99899 * 66.04223 * 12 11 9 14 14 C 1.53038 * 109.52113 * 185.84037 * 13 12 11 15 15 C 1.53116 * 109.27967 * 300.82369 * 14 13 12 16 16 C 1.53121 * 109.16169 * 57.65464 * 15 14 13 17 17 H 1.08996 * 109.50001 * 62.32842 * 16 15 14 18 18 C 1.50700 * 109.50084 * 182.40660 * 16 15 14 19 19 H 1.07997 * 120.00261 * 119.99931 * 18 16 15 20 20 C 1.37878 * 119.99998 * 299.99401 * 18 16 15 21 21 N 1.31516 * 119.99780 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00022 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46763 * 90.00722 * 22 20 18 24 24 H 1.48502 * 109.47192 * 210.00303 * 22 20 18 25 25 H 1.48503 * 109.47338 * 330.00606 * 22 20 18 26 26 C 1.46847 * 111.00322 * 190.25570 * 12 11 9 27 27 H 1.08997 * 109.47037 * 300.00580 * 1 2 3 28 28 H 1.09002 * 109.46871 * 60.00422 * 1 2 3 29 29 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46917 * 239.99825 * 2 1 3 31 31 H 1.09005 * 109.46882 * 120.00117 * 2 1 3 32 32 H 1.08993 * 109.46718 * 59.99704 * 6 4 3 33 33 H 1.09000 * 109.46477 * 299.99982 * 6 4 3 34 34 H 1.09002 * 109.47391 * 270.00005 * 8 7 6 35 35 H 1.09001 * 109.46813 * 150.00061 * 8 7 6 36 36 H 1.09004 * 109.47041 * 30.00189 * 8 7 6 37 37 H 1.09004 * 109.47017 * 299.99442 * 11 9 7 38 38 H 1.09002 * 109.47507 * 59.99434 * 11 9 7 39 39 H 1.08997 * 109.46478 * 305.85667 * 13 12 11 40 40 H 1.08998 * 109.45983 * 65.82785 * 13 12 11 41 41 H 1.09004 * 109.50314 * 60.76231 * 14 13 12 42 42 H 1.08996 * 109.50212 * 180.87955 * 14 13 12 43 43 H 1.08998 * 109.52591 * 177.56166 * 15 14 13 44 44 H 1.09002 * 109.52492 * 297.74589 * 15 14 13 45 45 H 0.97008 * 119.99475 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.46242 * 294.17805 * 26 12 11 47 47 H 1.08998 * 109.45906 * 54.14118 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9373 0.0000 7 7 5.3838 2.8606 0.0001 8 6 6.1154 2.8216 -1.2685 9 6 6.0566 2.8258 1.1675 10 8 5.4509 2.8584 2.2177 11 6 7.5616 2.7474 1.1676 12 7 8.0505 2.7228 2.5527 13 6 7.6363 1.4903 3.2351 14 6 8.0358 1.5637 4.7106 15 6 9.5529 1.7423 4.8153 16 6 9.9638 3.0067 4.0557 17 1 9.4953 3.8763 4.5163 18 6 11.4624 3.1579 4.1039 19 1 12.0334 3.1737 3.1873 20 6 12.1047 3.2760 5.3182 21 7 11.4095 3.2562 6.4344 22 14 13.9622 3.4641 5.3779 23 1 14.3154 4.9058 5.3320 24 1 14.4801 2.8675 6.6354 25 1 14.5679 2.7687 4.2139 26 6 9.5085 2.8914 2.5992 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5845 3.4700 0.8894 33 1 3.5853 3.4689 -0.8905 34 1 6.2431 1.7857 -1.5827 35 1 7.0934 3.2850 -1.1382 36 1 5.5541 3.3653 -2.0285 37 1 7.8782 1.8396 0.6540 38 1 7.9708 3.6172 0.6536 39 1 6.5551 1.3775 3.1568 40 1 8.1253 0.6351 2.7686 41 1 7.5364 2.4107 5.1811 42 1 7.7422 0.6423 5.2134 43 1 9.8369 1.8385 5.8633 44 1 10.0525 0.8770 4.3797 45 1 11.8615 3.3390 7.2888 46 1 9.9887 2.0296 2.1357 47 1 9.7869 3.7962 2.0590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -135.059669 kcal Electronic energy + Delta-G solvation = -26740.454554 eV Core-core repulsion = 22922.710907 eV Total energy + Delta-G solvation = -3817.743647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82887 -40.91345 -39.35674 -37.79600 -36.48959 -35.52172 -33.61297 -32.78206 -31.69238 -30.65003 -28.33213 -27.02229 -26.87916 -24.43799 -23.64874 -23.24626 -22.29694 -20.41140 -20.25933 -19.00105 -18.43739 -18.27588 -17.79584 -17.48245 -17.09532 -16.63800 -16.31761 -16.06062 -15.45015 -15.22548 -15.11784 -14.85447 -14.46207 -14.29588 -14.17988 -13.91192 -13.79145 -13.63932 -13.45633 -13.32213 -13.07557 -12.86960 -12.82376 -12.70732 -12.54699 -12.52168 -12.49754 -11.86572 -11.75524 -11.74504 -11.57649 -11.47253 -11.12989 -10.70416 -10.64156 -10.34522 -9.89516 -9.17251 -8.05475 -6.20317 1.08603 1.24223 1.43692 1.44071 1.54424 1.69315 2.04996 2.44980 3.05691 3.21505 3.54300 3.67817 3.95481 4.04958 4.11083 4.12488 4.19279 4.23100 4.30134 4.30554 4.34082 4.38372 4.48506 4.60037 4.67494 4.73675 4.80379 4.85296 4.90059 4.94326 4.95455 5.08662 5.11865 5.16034 5.32665 5.35672 5.41534 5.49780 5.64820 5.93028 6.05377 6.10004 6.19338 6.32127 6.45062 6.64764 6.92704 7.11004 7.47677 8.99584 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.030312 B = 0.002608 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.509069 B =10732.502270 C =11281.890271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.443 3.557 5 O -0.538 6.538 6 C 0.125 3.875 7 N -0.605 5.605 8 C 0.070 3.930 9 C 0.518 3.482 10 O -0.557 6.557 11 C 0.040 3.960 12 N -0.540 5.540 13 C 0.071 3.929 14 C -0.107 4.107 15 C -0.102 4.102 16 C 0.051 3.949 17 H -0.006 1.006 18 C -0.532 4.532 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.083 3.917 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.171 0.829 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.259 0.741 46 H 0.025 0.975 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.143 -2.566 -20.358 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.286 3.714 5 O -0.427 6.427 6 C 0.000 4.000 7 N -0.339 5.339 8 C -0.071 4.071 9 C 0.308 3.692 10 O -0.434 6.434 11 C -0.091 4.091 12 N -0.265 5.265 13 C -0.057 4.057 14 C -0.145 4.145 15 C -0.140 4.140 16 C 0.033 3.967 17 H 0.012 0.988 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.189 4.189 21 N -0.558 5.558 22 Si 0.784 3.216 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.044 4.044 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.188 0.812 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.455 -2.464 -19.384 27.573 hybrid contribution 1.396 -1.002 0.284 1.742 sum -18.059 -3.466 -19.099 26.513 Atomic orbital electron populations 1.21818 0.90109 1.04355 1.03903 1.23249 0.97268 0.79365 1.02097 1.86496 1.23846 1.33557 1.83659 1.25038 0.80867 0.94183 0.71342 1.90666 1.61255 1.44331 1.46487 1.21174 0.80226 0.89421 1.09153 1.47670 1.05365 1.73380 1.07530 1.22200 0.98473 1.02888 0.83575 1.20972 0.90717 0.74459 0.83099 1.90665 1.70641 1.49550 1.32574 1.22071 0.91154 1.04494 0.91351 1.61597 1.13257 1.37696 1.13945 1.21991 0.99816 0.89302 0.94582 1.21529 0.97189 1.00207 0.95574 1.21473 0.92674 0.97659 1.02225 1.18593 0.93981 0.93336 0.90831 0.98795 1.21507 0.93000 1.49849 0.92658 0.92286 1.25801 1.02738 0.94940 0.95440 1.70070 1.36857 1.51028 0.97857 0.85552 0.80234 0.78319 0.77491 1.20086 1.21240 1.18967 1.22054 0.84213 0.99404 0.98714 0.91548 0.90521 0.88405 0.91008 0.92683 0.86107 0.81177 0.92728 0.88959 0.87243 0.90784 0.85221 0.91013 0.95897 0.93838 0.91961 0.92314 0.95533 0.93158 0.95720 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 71.98 0.74 -0.70 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.36 -7.07 10.22 -51.41 -0.53 -7.59 16 4 C 0.44 10.00 8.02 71.24 0.57 10.57 16 5 O -0.54 -16.14 16.18 21.95 0.36 -15.79 16 6 C 0.12 2.08 6.04 85.63 0.52 2.60 16 7 N -0.61 -12.28 2.36 -851.13 -2.01 -14.29 16 8 C 0.07 0.81 10.29 127.77 1.31 2.13 16 9 C 0.52 15.40 7.35 87.66 0.64 16.05 16 10 O -0.56 -21.48 13.93 -3.02 -0.04 -21.53 16 11 C 0.04 1.15 4.00 85.56 0.34 1.49 16 12 N -0.54 -21.28 4.39 -900.93 -3.96 -25.24 16 13 C 0.07 2.89 5.11 86.33 0.44 3.33 16 14 C -0.11 -4.81 6.09 30.65 0.19 -4.63 16 15 C -0.10 -5.25 5.02 30.67 0.15 -5.09 16 16 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 17 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 18 C -0.53 -29.73 8.56 25.60 0.22 -29.51 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.01 0.52 5.30 84.65 0.45 0.97 16 21 N -0.92 -54.99 11.35 21.45 0.24 -54.75 16 22 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C 0.08 3.54 4.68 86.32 0.40 3.95 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.07 8.13 -2.38 -0.02 1.05 16 32 H 0.12 2.27 7.42 -2.39 -0.02 2.25 16 33 H 0.17 1.06 7.89 -2.39 -0.02 1.05 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.88 6.44 -2.39 -0.02 0.87 16 36 H 0.11 0.50 7.89 -2.38 -0.02 0.49 16 37 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 38 H 0.13 2.96 7.24 -2.39 -0.02 2.94 16 39 H 0.07 3.01 5.80 -2.39 -0.01 2.99 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 43 H 0.06 3.38 6.15 -2.39 -0.01 3.37 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 46 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 2.88 8.01 -2.39 -0.02 2.86 16 Total: -1.00 -78.21 377.19 3.43 -74.78 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.94 Total: 13.02 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 6.40 Total: 5.20 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -5.72 Total: -94.28 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.21 Total: -44.90 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -78.21 3.43 -74.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.278 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds