Wall clock time and date at job start Fri Apr 10 2020 18:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99855 * 2 1 4 4 O 1.20824 * 119.99872 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99749 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46904 * 180.02562 * 5 3 2 7 7 C 1.46499 * 120.00123 * 269.99929 * 6 5 3 8 8 C 1.34779 * 120.00169 * 89.99597 * 6 5 3 9 9 O 1.21282 * 119.99922 * 0.02562 * 8 6 5 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.53006 * 109.46866 * 180.02562 * 10 8 6 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 8 13 13 C 1.46850 * 111.00146 * 294.20935 * 12 11 10 14 14 C 1.53037 * 109.52222 * 174.16343 * 13 12 11 15 15 C 1.53122 * 109.27872 * 59.17710 * 14 13 12 16 16 C 1.53120 * 109.16390 * 302.34752 * 15 14 13 17 17 H 1.08997 * 109.50175 * 297.71157 * 16 15 14 18 18 C 1.50703 * 109.50362 * 177.59440 * 16 15 14 19 19 H 1.08002 * 119.99823 * 240.19601 * 18 16 15 20 20 C 1.37870 * 120.00063 * 60.19557 * 18 16 15 21 21 N 1.31517 * 120.00005 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00041 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47150 * 90.00316 * 22 20 18 24 24 H 1.48506 * 109.46977 * 210.00168 * 22 20 18 25 25 H 1.48505 * 109.47240 * 329.99955 * 22 20 18 26 26 C 1.46850 * 110.99680 * 170.00177 * 12 11 10 27 27 H 1.08998 * 109.47139 * 299.99921 * 1 2 3 28 28 H 1.09001 * 109.47279 * 60.00043 * 1 2 3 29 29 H 1.08994 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47183 * 59.99783 * 5 3 2 31 31 H 1.09007 * 109.46954 * 299.99700 * 5 3 2 32 32 H 1.09002 * 109.47085 * 270.00430 * 7 6 5 33 33 H 1.09002 * 109.46740 * 30.00103 * 7 6 5 34 34 H 1.09001 * 109.47266 * 149.99827 * 7 6 5 35 35 H 1.09000 * 109.47247 * 60.00371 * 10 8 6 36 36 H 1.09001 * 109.47358 * 299.99798 * 10 8 6 37 37 H 1.08993 * 109.46955 * 300.00219 * 11 10 8 38 38 H 1.09000 * 109.47050 * 60.00048 * 11 10 8 39 39 H 1.08997 * 109.46057 * 294.17573 * 13 12 11 40 40 H 1.08997 * 109.46197 * 54.14930 * 13 12 11 41 41 H 1.09004 * 109.50535 * 299.23992 * 14 13 12 42 42 H 1.08999 * 109.53439 * 179.13830 * 14 13 12 43 43 H 1.08996 * 109.52357 * 182.43626 * 15 14 13 44 44 H 1.09007 * 109.57293 * 62.28626 * 15 14 13 45 45 H 0.96999 * 120.00041 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46046 * 305.85403 * 26 12 11 47 47 H 1.08997 * 109.46374 * 65.83182 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1888 3.3831 -1.2682 8 6 4.1732 3.3254 1.1677 9 8 4.0021 2.7430 2.2177 10 6 4.5999 4.7707 1.1684 11 6 4.7457 5.2586 2.6112 12 7 5.1622 6.6673 2.6119 13 6 6.5100 6.8179 2.0486 14 6 6.8519 8.3049 1.9307 15 6 6.7827 8.9511 3.3172 16 6 5.3836 8.7380 3.9018 17 1 4.6458 9.2310 3.2687 18 6 5.3247 9.3196 5.2908 19 1 5.0967 8.6835 6.1333 20 6 5.5621 10.6636 5.4861 21 7 5.8403 11.4381 4.4603 22 14 5.4884 11.3845 7.2078 23 1 6.8331 11.3101 7.8335 24 1 5.0554 12.8030 7.1323 25 1 4.5182 10.6136 8.0262 26 6 5.0844 7.2385 3.9625 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 5.2257 3.2661 -1.5834 33 1 3.5287 2.9643 -2.0278 34 1 3.9661 4.4420 -1.1371 35 1 3.8489 5.3715 0.6555 36 1 5.5560 4.8675 0.6541 37 1 3.7898 5.1617 3.1259 38 1 5.4969 4.6577 3.1238 39 1 7.2332 6.3297 2.7019 40 1 6.5444 6.3580 1.0610 41 1 6.1371 8.7911 1.2666 42 1 7.8581 8.4167 1.5269 43 1 6.9831 10.0190 3.2318 44 1 7.5244 8.4925 3.9712 45 1 6.0068 12.3837 4.5976 46 1 4.0832 7.0839 4.3650 47 1 5.8144 6.7484 4.6067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:10 Heat of formation + Delta-G solvation = -117.194306 kcal Electronic energy + Delta-G solvation = -26347.236758 eV Core-core repulsion = 22530.267811 eV Total energy + Delta-G solvation = -3816.968947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98566 -39.84429 -38.14630 -36.86596 -35.67321 -34.16536 -32.22910 -30.82398 -29.91351 -29.10758 -27.65200 -26.50654 -24.93280 -24.01894 -21.90659 -21.63568 -20.73536 -19.23348 -18.57711 -18.15724 -17.51679 -17.16857 -16.61557 -16.20322 -16.13432 -15.62777 -14.93173 -14.48509 -14.38912 -13.89617 -13.86136 -13.60925 -13.42336 -13.23822 -12.98498 -12.82874 -12.59820 -12.43774 -12.42526 -12.31555 -12.15919 -11.53752 -11.42263 -11.13961 -10.95177 -10.90952 -10.85834 -10.63778 -10.54545 -10.10618 -9.94811 -9.79271 -9.42928 -9.16382 -8.99039 -8.66357 -8.26347 -7.63742 -5.93586 -3.99249 1.87464 2.02807 2.54901 2.83516 3.33951 3.40529 3.44328 4.19982 4.43201 4.46799 4.60679 4.74279 4.76566 4.81158 4.85028 4.95052 5.07728 5.15995 5.18748 5.27859 5.36420 5.36736 5.65942 5.72843 5.82224 5.90391 6.03808 6.09158 6.10803 6.20487 6.34570 6.46812 6.56844 6.73882 6.79226 6.95794 7.01739 7.25601 7.40837 7.43396 7.69444 7.79151 7.84436 7.95518 8.13120 8.21482 8.52886 9.04799 9.64808 11.12484 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.002427 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.860470 B =11535.495520 C =12184.950597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.440 3.560 4 O -0.494 6.494 5 C 0.125 3.875 6 N -0.610 5.610 7 C 0.079 3.921 8 C 0.524 3.476 9 O -0.533 6.533 10 C -0.132 4.132 11 C 0.071 3.929 12 N -0.540 5.540 13 C 0.059 3.941 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.890 3.110 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.069 3.931 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.259 0.741 46 H 0.060 0.940 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 -21.432 -15.353 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.281 3.719 4 O -0.380 6.380 5 C 0.000 4.000 6 N -0.345 5.345 7 C -0.064 4.064 8 C 0.314 3.686 9 O -0.408 6.408 10 C -0.172 4.172 11 C -0.058 4.058 12 N -0.265 5.265 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.552 4.552 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.058 4.058 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.053 -20.970 -15.111 26.163 hybrid contribution 0.220 -0.005 1.286 1.305 sum -3.833 -20.975 -13.825 25.412 Atomic orbital electron populations 1.23267 0.76124 1.03691 1.02680 1.86486 1.23655 1.33417 1.84277 1.24546 0.92936 0.81677 0.72759 1.90701 1.66848 1.36349 1.44123 1.20846 0.87005 0.85030 1.07120 1.47629 1.68408 1.10793 1.07640 1.21899 1.01482 0.98561 0.84421 1.21027 0.75612 0.89490 0.82510 1.90706 1.50675 1.68491 1.30961 1.21712 1.03647 0.90828 1.01039 1.21754 1.01325 0.89208 0.93533 1.61991 1.25275 1.14212 1.24984 1.22093 0.88930 0.98064 0.97771 1.21671 0.99153 0.94028 1.00613 1.21655 0.99073 1.02402 0.91782 1.18671 0.93545 0.88083 0.96115 0.94734 1.21161 1.47529 0.93530 0.92971 0.92839 1.24930 0.95225 0.97109 0.96621 1.69894 1.48196 1.05283 1.29435 0.86629 0.78220 0.78329 0.85008 1.20813 1.21274 1.19969 1.22303 0.99488 0.98508 0.85484 0.91785 0.91918 0.88008 0.86067 0.85530 0.91803 0.91147 0.89895 0.87663 0.88672 0.90457 0.94764 0.95870 0.92441 0.92086 0.93593 0.89132 0.95187 0.93114 0.92190 0.96202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.34 10.57 -39.28 -0.41 -3.76 16 3 C 0.44 4.72 8.02 36.01 0.29 5.01 16 4 O -0.49 -7.01 16.18 -18.75 -0.30 -7.31 16 5 C 0.13 1.02 6.00 -5.19 -0.03 0.99 16 6 N -0.61 -5.98 2.36 -182.95 -0.43 -6.41 16 7 C 0.08 0.51 10.24 59.85 0.61 1.12 16 8 C 0.52 6.93 7.67 -10.99 -0.08 6.85 16 9 O -0.53 -8.95 15.56 5.56 0.09 -8.86 16 10 C -0.13 -1.68 4.18 -27.88 -0.12 -1.79 16 11 C 0.07 1.16 4.25 -3.82 -0.02 1.14 16 12 N -0.54 -10.13 4.66 -234.67 -1.09 -11.22 16 13 C 0.06 1.02 5.29 -3.83 -0.02 1.00 16 14 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 15 C -0.11 -2.64 5.03 -26.61 -0.13 -2.78 16 16 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 17 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -14.31 8.56 -34.44 -0.29 -14.61 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.57 11.36 55.43 0.63 -24.94 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.07 1.52 4.68 -3.83 -0.02 1.50 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.13 1.07 7.42 -51.93 -0.39 0.68 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 35 H 0.11 1.29 7.40 -51.93 -0.38 0.91 16 36 H 0.10 1.02 6.39 -51.93 -0.33 0.69 16 37 H 0.08 1.37 7.94 -51.93 -0.41 0.95 16 38 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.06 1.33 8.02 -51.93 -0.42 0.91 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -34.24 377.36 -8.01 -42.25 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.93 Total: -2.17 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.79 Total: 0.18 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.90 Total: -42.57 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.63 Total: -19.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.24 -8.01 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.949 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds