Wall clock time and date at job start Fri Apr 10 2020 18:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34238 * 116.99855 * 2 1 4 4 O 1.20824 * 119.99872 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99749 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46904 * 180.02562 * 5 3 2 7 7 C 1.46499 * 120.00123 * 269.99929 * 6 5 3 8 8 C 1.34779 * 120.00169 * 89.99597 * 6 5 3 9 9 O 1.21282 * 119.99922 * 0.02562 * 8 6 5 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 6 5 11 11 C 1.53006 * 109.46866 * 180.02562 * 10 8 6 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 8 13 13 C 1.46850 * 111.00146 * 294.20935 * 12 11 10 14 14 C 1.53037 * 109.52222 * 174.16343 * 13 12 11 15 15 C 1.53122 * 109.27872 * 59.17710 * 14 13 12 16 16 C 1.53120 * 109.16390 * 302.34752 * 15 14 13 17 17 H 1.08997 * 109.50175 * 297.71157 * 16 15 14 18 18 C 1.50703 * 109.50362 * 177.59440 * 16 15 14 19 19 H 1.08002 * 119.99823 * 240.19601 * 18 16 15 20 20 C 1.37870 * 120.00063 * 60.19557 * 18 16 15 21 21 N 1.31517 * 120.00005 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00041 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47150 * 90.00316 * 22 20 18 24 24 H 1.48506 * 109.46977 * 210.00168 * 22 20 18 25 25 H 1.48505 * 109.47240 * 329.99955 * 22 20 18 26 26 C 1.46850 * 110.99680 * 170.00177 * 12 11 10 27 27 H 1.08998 * 109.47139 * 299.99921 * 1 2 3 28 28 H 1.09001 * 109.47279 * 60.00043 * 1 2 3 29 29 H 1.08994 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47183 * 59.99783 * 5 3 2 31 31 H 1.09007 * 109.46954 * 299.99700 * 5 3 2 32 32 H 1.09002 * 109.47085 * 270.00430 * 7 6 5 33 33 H 1.09002 * 109.46740 * 30.00103 * 7 6 5 34 34 H 1.09001 * 109.47266 * 149.99827 * 7 6 5 35 35 H 1.09000 * 109.47247 * 60.00371 * 10 8 6 36 36 H 1.09001 * 109.47358 * 299.99798 * 10 8 6 37 37 H 1.08993 * 109.46955 * 300.00219 * 11 10 8 38 38 H 1.09000 * 109.47050 * 60.00048 * 11 10 8 39 39 H 1.08997 * 109.46057 * 294.17573 * 13 12 11 40 40 H 1.08997 * 109.46197 * 54.14930 * 13 12 11 41 41 H 1.09004 * 109.50535 * 299.23992 * 14 13 12 42 42 H 1.08999 * 109.53439 * 179.13830 * 14 13 12 43 43 H 1.08996 * 109.52357 * 182.43626 * 15 14 13 44 44 H 1.09007 * 109.57293 * 62.28626 * 15 14 13 45 45 H 0.96999 * 120.00041 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46046 * 305.85403 * 26 12 11 47 47 H 1.08997 * 109.46374 * 65.83182 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1888 3.3831 -1.2682 8 6 4.1732 3.3254 1.1677 9 8 4.0021 2.7430 2.2177 10 6 4.5999 4.7707 1.1684 11 6 4.7457 5.2586 2.6112 12 7 5.1622 6.6673 2.6119 13 6 6.5100 6.8179 2.0486 14 6 6.8519 8.3049 1.9307 15 6 6.7827 8.9511 3.3172 16 6 5.3836 8.7380 3.9018 17 1 4.6458 9.2310 3.2687 18 6 5.3247 9.3196 5.2908 19 1 5.0967 8.6835 6.1333 20 6 5.5621 10.6636 5.4861 21 7 5.8403 11.4381 4.4603 22 14 5.4884 11.3845 7.2078 23 1 6.8331 11.3101 7.8335 24 1 5.0554 12.8030 7.1323 25 1 4.5182 10.6136 8.0262 26 6 5.0844 7.2385 3.9625 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.9557 0.7810 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 5.2257 3.2661 -1.5834 33 1 3.5287 2.9643 -2.0278 34 1 3.9661 4.4420 -1.1371 35 1 3.8489 5.3715 0.6555 36 1 5.5560 4.8675 0.6541 37 1 3.7898 5.1617 3.1259 38 1 5.4969 4.6577 3.1238 39 1 7.2332 6.3297 2.7019 40 1 6.5444 6.3580 1.0610 41 1 6.1371 8.7911 1.2666 42 1 7.8581 8.4167 1.5269 43 1 6.9831 10.0190 3.2318 44 1 7.5244 8.4925 3.9712 45 1 6.0068 12.3837 4.5976 46 1 4.0832 7.0839 4.3650 47 1 5.8144 6.7484 4.6067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:09 Heat of formation + Delta-G solvation = -139.889598 kcal Electronic energy + Delta-G solvation = -26348.220899 eV Core-core repulsion = 22530.267811 eV Total energy + Delta-G solvation = -3817.953089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.81267 -40.80383 -39.70362 -37.69576 -36.53168 -35.90998 -33.97902 -32.04300 -31.53433 -30.18392 -28.24300 -27.29650 -26.91805 -25.38223 -23.39632 -22.94763 -21.97111 -20.37115 -20.13274 -18.92636 -18.59772 -18.21264 -17.93886 -17.37276 -17.02553 -16.72316 -16.58463 -16.08547 -15.57195 -15.21277 -14.96346 -14.67821 -14.56299 -14.43788 -14.21464 -13.98206 -13.90914 -13.70037 -13.39249 -13.20337 -13.06586 -13.00413 -12.84441 -12.78762 -12.57832 -12.43881 -12.04354 -11.86411 -11.80747 -11.75922 -11.68696 -11.36195 -11.01959 -10.83270 -10.66083 -10.36482 -9.92124 -9.18215 -8.08222 -6.21981 1.07679 1.24657 1.40345 1.40913 1.51406 1.69693 2.09187 2.42624 3.03213 3.18396 3.64500 3.75390 3.87390 4.07193 4.16233 4.22737 4.24009 4.26008 4.27963 4.33972 4.34824 4.47561 4.55521 4.63435 4.66309 4.72203 4.76202 4.88315 4.91527 4.94412 5.00713 5.04006 5.14996 5.19773 5.25299 5.33318 5.43478 5.53554 5.64263 5.96349 6.11716 6.15401 6.20973 6.32164 6.46032 6.62715 6.89744 7.01559 7.45375 8.96366 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.002427 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.860470 B =11535.495520 C =12184.950597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.440 3.560 4 O -0.537 6.537 5 C 0.123 3.877 6 N -0.604 5.604 7 C 0.070 3.930 8 C 0.520 3.480 9 O -0.580 6.580 10 C -0.121 4.121 11 C 0.075 3.925 12 N -0.544 5.544 13 C 0.061 3.939 14 C -0.109 4.109 15 C -0.105 4.105 16 C 0.054 3.946 17 H -0.001 1.001 18 C -0.539 4.539 19 H 0.047 0.953 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 0.953 3.047 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.272 1.272 26 C 0.081 3.919 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.170 0.830 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.048 0.952 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -23.058 -17.277 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.282 3.718 4 O -0.426 6.426 5 C -0.002 4.002 6 N -0.337 5.337 7 C -0.071 4.071 8 C 0.310 3.690 9 O -0.460 6.460 10 C -0.161 4.161 11 C -0.053 4.053 12 N -0.268 5.268 13 C -0.066 4.066 14 C -0.147 4.147 15 C -0.144 4.144 16 C 0.035 3.965 17 H 0.017 0.983 18 C -0.577 4.577 19 H 0.065 0.935 20 C -0.184 4.184 21 N -0.552 5.552 22 Si 0.779 3.221 23 H -0.200 1.200 24 H -0.206 1.206 25 H -0.197 1.197 26 C -0.047 4.047 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.188 0.812 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.121 0.879 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -3.133 -22.629 -17.091 28.531 hybrid contribution -0.125 0.453 1.832 1.891 sum -3.258 -22.176 -15.259 27.115 Atomic orbital electron populations 1.23508 0.75028 1.05709 1.02129 1.86488 1.24804 1.32693 1.83738 1.25090 0.93908 0.81376 0.71401 1.90685 1.67931 1.37653 1.46354 1.21181 0.85339 0.84409 1.09245 1.47689 1.66769 1.11509 1.07724 1.22194 1.03679 0.98195 0.82995 1.21082 0.75443 0.89599 0.82926 1.90690 1.53049 1.69405 1.32815 1.21597 1.05449 0.90726 0.98338 1.21678 0.99861 0.87537 0.96220 1.61941 1.26639 1.15706 1.22555 1.22175 0.87745 0.96753 0.99965 1.21585 1.00799 0.95027 0.97295 1.21472 0.97457 1.00847 0.94587 1.18584 0.93658 0.89822 0.94449 0.98255 1.21515 1.47975 0.94174 0.94063 0.93498 1.25692 0.94807 0.97452 1.00429 1.70024 1.48471 1.05480 1.31249 0.85633 0.78428 0.77585 0.80455 1.20033 1.20638 1.19661 1.21971 0.98522 0.96567 0.87592 0.93186 0.91677 0.84734 0.81236 0.85849 0.88867 0.89807 0.90156 0.86987 0.85703 0.92636 0.95348 0.95867 0.87909 0.92610 0.90759 0.92240 0.96125 0.92987 0.93300 0.96947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.18 10.57 -51.49 -0.54 -6.72 16 3 C 0.44 8.89 8.02 71.24 0.57 9.47 16 4 O -0.54 -15.06 16.18 21.97 0.36 -14.71 16 5 C 0.12 1.71 6.00 85.63 0.51 2.22 16 6 N -0.60 -10.33 2.36 -851.12 -2.01 -12.34 16 7 C 0.07 0.65 10.24 127.77 1.31 1.96 16 8 C 0.52 13.02 7.67 87.66 0.67 13.69 16 9 O -0.58 -19.49 15.56 -3.04 -0.05 -19.54 16 10 C -0.12 -2.82 4.18 29.85 0.12 -2.69 16 11 C 0.08 2.44 4.25 86.31 0.37 2.80 16 12 N -0.54 -20.07 4.66 -896.35 -4.17 -24.25 16 13 C 0.06 1.95 5.29 86.32 0.46 2.41 16 14 C -0.11 -4.05 6.09 30.65 0.19 -3.86 16 15 C -0.11 -5.10 5.03 30.68 0.15 -4.95 16 16 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 17 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 18 C -0.54 -31.04 8.56 25.60 0.22 -30.82 16 19 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 20 C 0.02 0.86 5.30 84.65 0.45 1.31 16 21 N -0.91 -53.74 11.36 21.45 0.24 -53.50 16 22 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.08 3.68 4.68 86.32 0.40 4.09 16 27 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.17 0.67 8.07 -2.39 -0.02 0.65 16 31 H 0.12 1.89 7.42 -2.38 -0.02 1.87 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.59 8.07 -2.39 -0.02 0.57 16 34 H 0.08 0.82 6.44 -2.39 -0.02 0.80 16 35 H 0.11 2.50 7.40 -2.39 -0.02 2.48 16 36 H 0.13 2.12 6.39 -2.39 -0.02 2.11 16 37 H 0.06 2.02 7.94 -2.39 -0.02 2.00 16 38 H 0.03 0.95 8.08 -2.39 -0.02 0.93 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 2.42 6.21 -2.39 -0.01 2.41 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.06 3.24 6.16 -2.39 -0.01 3.22 16 44 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.05 2.27 8.02 -2.39 -0.02 2.25 16 47 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.31 377.36 3.39 -74.92 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.94 Total: 9.18 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.60 Total: 0.02 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -5.94 Total: -90.08 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.24 Total: -40.97 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -78.31 3.39 -74.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.969 kcal (2) G-P(sol) polarization free energy of solvation -78.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds