Wall clock time and date at job start Fri Apr 10 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.46498 * 120.00074 * 89.99900 * 3 2 1 5 5 C 1.50699 * 109.47239 * 89.99978 * 4 3 2 6 6 H 1.08000 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47188 * 90.00139 * 9 7 5 11 11 H 1.48510 * 109.46885 * 209.99980 * 9 7 5 12 12 H 1.48493 * 109.47203 * 329.99630 * 9 7 5 13 13 C 1.34780 * 119.99897 * 269.99971 * 3 2 1 14 14 O 1.21287 * 119.99781 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99880 * 359.97438 * 13 3 2 16 16 N 1.46911 * 109.46633 * 180.02562 * 15 13 3 17 17 C 1.46892 * 110.99509 * 180.02562 * 16 15 13 18 18 H 1.08994 * 110.02640 * 42.67196 * 17 16 15 19 19 C 1.54272 * 110.03219 * 281.22660 * 17 16 15 20 20 C 1.54890 * 104.19575 * 217.11147 * 19 17 16 21 21 C 1.54888 * 102.75244 * 37.93954 * 20 19 17 22 22 C 1.53879 * 110.02975 * 164.06467 * 17 16 15 23 23 H 1.09004 * 110.02742 * 238.56428 * 22 17 16 24 24 C 1.50698 * 110.03064 * 359.94633 * 22 17 16 25 25 O 1.20820 * 119.99941 * 84.53521 * 24 22 17 26 26 O 1.34221 * 120.00027 * 264.52482 * 24 22 17 27 27 C 1.45203 * 117.00122 * 180.02562 * 26 24 22 28 28 H 1.09000 * 109.47481 * 300.00127 * 1 2 3 29 29 H 1.09005 * 109.46977 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47481 * 239.99873 * 2 1 3 32 32 H 1.09003 * 109.47219 * 120.00286 * 2 1 3 33 33 H 1.08995 * 109.47195 * 210.00420 * 4 3 2 34 34 H 1.09002 * 109.46665 * 330.00310 * 4 3 2 35 35 H 0.96994 * 120.00362 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.46972 * 299.99449 * 15 13 3 37 37 H 1.08996 * 109.47378 * 59.99970 * 15 13 3 38 38 H 1.00904 * 110.99809 * 303.94950 * 16 15 13 39 39 H 1.09000 * 110.48624 * 335.78777 * 19 17 16 40 40 H 1.09002 * 110.48416 * 98.43204 * 19 17 16 41 41 H 1.09004 * 110.75232 * 279.62178 * 20 19 17 42 42 H 1.09003 * 110.75357 * 156.26200 * 20 19 17 43 43 H 1.08995 * 110.48582 * 203.37808 * 21 20 19 44 44 H 1.09003 * 110.59197 * 80.78987 * 21 20 19 45 45 H 1.09000 * 109.46806 * 60.00516 * 27 26 24 46 46 H 1.09001 * 109.46927 * 179.97438 * 27 26 24 47 47 H 1.08995 * 109.47207 * 300.00171 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3429 1.2308 1.0958 7 6 4.1491 2.3895 2.8779 8 7 3.3488 3.1249 3.6186 9 14 5.9135 2.0965 3.4169 10 1 6.7847 3.1626 2.8602 11 1 5.9885 2.1200 4.8999 12 1 6.3700 0.7741 2.9191 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9923 1.3059 -2.4723 16 7 2.3111 2.2058 -3.5889 17 6 2.0776 1.5456 -4.8801 18 1 1.1431 0.9855 -4.8494 19 6 3.2510 0.5998 -5.2099 20 6 3.4322 0.7393 -6.7418 21 6 3.1721 2.2473 -6.9810 22 6 2.0275 2.5931 -6.0063 23 1 1.0689 2.5407 -6.5225 24 6 2.2322 3.9733 -5.4369 25 8 3.3508 4.3911 -5.2528 26 8 1.1717 4.7385 -5.1344 27 6 1.4439 6.0569 -4.5903 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6876 2.0283 35 1 3.6747 3.5147 4.4448 36 1 2.6229 0.4187 -2.5298 37 1 0.9445 1.0114 -2.5303 38 1 1.7860 3.0649 -3.5222 39 1 4.1543 0.9165 -4.6885 40 1 2.9982 -0.4275 -4.9476 41 1 2.7003 0.1318 -7.2742 42 1 4.4466 0.4706 -7.0368 43 1 2.8619 2.4222 -8.0112 44 1 4.0620 2.8317 -6.7471 45 1 2.0257 6.6337 -5.3093 46 1 0.5026 6.5691 -4.3909 47 1 2.0077 5.9579 -3.6627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595902346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:15 Heat of formation + Delta-G solvation = -122.812304 kcal Electronic energy + Delta-G solvation = -27348.369018 eV Core-core repulsion = 23531.156456 eV Total energy + Delta-G solvation = -3817.212562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87690 -39.13245 -38.17154 -36.23836 -35.29650 -34.16274 -32.72777 -30.19039 -30.07286 -28.66953 -27.48910 -26.93581 -24.99072 -23.00093 -22.56361 -22.26648 -20.79480 -19.60196 -18.39625 -17.71013 -17.00284 -16.65521 -16.38875 -16.02163 -15.77140 -15.63638 -14.97803 -14.72878 -14.33446 -14.22133 -13.72551 -13.54851 -13.36105 -13.06649 -12.84808 -12.65256 -12.17106 -12.07275 -12.00962 -11.77348 -11.70936 -11.45851 -11.31978 -11.29508 -11.18714 -11.09744 -10.88121 -10.83348 -10.70251 -10.68948 -10.50369 -10.32678 -10.09016 -9.59621 -8.87066 -8.39843 -8.38875 -7.62104 -6.00772 -4.05033 2.25778 2.69350 3.34477 3.40271 3.41199 3.48571 3.71487 4.22046 4.26821 4.30744 4.49372 4.71207 4.99309 5.06642 5.10130 5.15313 5.15856 5.19772 5.28454 5.28639 5.30016 5.34090 5.39740 5.49840 5.60655 5.62955 5.66537 5.69436 5.77751 5.79627 5.85113 6.00538 6.02530 6.23223 6.24505 6.44024 6.47124 6.85299 7.14262 7.29451 7.47701 7.59611 7.82769 7.96209 8.27724 8.46539 8.94873 9.15634 9.60146 11.07332 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003649 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.863847 B = 7672.150360 C = 8029.108356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.042 3.958 16 N -0.666 5.666 17 C 0.096 3.904 18 H 0.057 0.943 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.085 4.085 23 H 0.103 0.897 24 C 0.465 3.535 25 O -0.481 6.481 26 O -0.368 6.368 27 C 0.035 3.965 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.346 0.654 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 -5.814 -20.745 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.090 4.090 16 N -0.301 5.301 17 C -0.014 4.014 18 H 0.075 0.925 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.105 4.105 23 H 0.121 0.879 24 C 0.306 3.694 25 O -0.365 6.365 26 O -0.285 6.285 27 C -0.059 4.059 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.168 0.832 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.701 -5.047 -20.450 22.104 hybrid contribution -0.028 0.008 0.569 0.570 sum -6.729 -5.039 -19.881 21.585 Atomic orbital electron populations 1.22222 0.96914 1.01343 1.02218 1.21399 0.93379 0.84364 1.02639 1.48247 1.64049 1.13211 1.07666 1.19240 0.96236 0.93566 0.78082 1.21444 0.96932 1.31798 1.06119 0.92477 1.24926 0.97808 0.94947 0.96403 1.69932 1.35610 1.33639 1.14361 0.86507 0.84859 0.78671 0.77433 1.20539 1.21197 1.19934 1.20161 0.78918 0.87157 0.84862 1.90684 1.44736 1.17994 1.86887 1.21942 0.99889 0.96760 0.90431 1.60385 1.63040 1.06773 0.99939 1.22171 0.98294 0.93293 0.87670 0.92476 1.22503 0.99064 0.98238 0.95752 1.22439 1.02014 0.95209 0.96079 1.22419 0.97823 0.97468 0.97331 1.21887 1.02526 0.88441 0.97601 0.87858 1.23279 0.83152 0.87357 0.75595 1.90679 1.25135 1.72784 1.47924 1.86477 1.37954 1.28967 1.75152 1.23289 1.03026 0.80177 0.99411 0.92015 0.93281 0.92191 0.91876 0.89921 0.94028 0.95086 0.92785 0.88443 0.92860 0.83219 0.89504 0.91331 0.91300 0.90757 0.90976 0.89240 0.92169 0.88308 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.15 0.38 -1.84 16 2 C 0.11 1.69 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 5 C -0.52 -15.16 9.39 -34.44 -0.32 -15.49 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 C 0.50 10.74 7.71 -10.98 -0.08 10.65 16 14 O -0.53 -13.81 15.78 5.55 0.09 -13.72 16 15 C 0.04 0.65 4.55 -4.97 -0.02 0.62 16 16 N -0.67 -10.35 5.25 -106.81 -0.56 -10.91 16 17 C 0.10 1.08 3.21 -66.59 -0.21 0.86 16 18 H 0.06 0.54 7.96 -51.93 -0.41 0.12 16 19 C -0.12 -1.20 6.04 -25.07 -0.15 -1.35 16 20 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 21 C -0.11 -1.05 6.32 -25.07 -0.16 -1.21 16 22 C -0.08 -0.89 3.40 -90.65 -0.31 -1.20 16 23 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 24 C 0.47 6.52 4.73 36.00 0.17 6.69 16 25 O -0.48 -8.38 15.52 -18.75 -0.29 -8.67 16 26 O -0.37 -4.84 10.19 -39.23 -0.40 -5.24 16 27 C 0.03 0.41 10.56 101.05 1.07 1.47 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.10 1.36 7.06 -51.93 -0.37 0.99 16 37 H 0.05 0.69 7.14 -51.93 -0.37 0.32 16 38 H 0.35 5.85 6.15 -39.29 -0.24 5.61 16 39 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.05 6.92 -51.93 -0.36 0.69 16 45 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -35.88 380.96 -7.98 -43.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.87 Total: 3.08 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 0.04 Total: 7.98 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.25 Total: -50.38 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.60 Total: -27.63 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.88 -7.98 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595902346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.953 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds