Wall clock time and date at job start Fri Apr 10 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.46498 * 120.00074 * 89.99900 * 3 2 1 5 5 C 1.50699 * 109.47239 * 89.99978 * 4 3 2 6 6 H 1.08000 * 120.00094 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00326 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47188 * 90.00139 * 9 7 5 11 11 H 1.48510 * 109.46885 * 209.99980 * 9 7 5 12 12 H 1.48493 * 109.47203 * 329.99630 * 9 7 5 13 13 C 1.34780 * 119.99897 * 269.99971 * 3 2 1 14 14 O 1.21287 * 119.99781 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99880 * 359.97438 * 13 3 2 16 16 N 1.46911 * 109.46633 * 180.02562 * 15 13 3 17 17 C 1.46892 * 110.99509 * 180.02562 * 16 15 13 18 18 H 1.08994 * 110.02640 * 42.67196 * 17 16 15 19 19 C 1.54272 * 110.03219 * 281.22660 * 17 16 15 20 20 C 1.54890 * 104.19575 * 217.11147 * 19 17 16 21 21 C 1.54888 * 102.75244 * 37.93954 * 20 19 17 22 22 C 1.53879 * 110.02975 * 164.06467 * 17 16 15 23 23 H 1.09004 * 110.02742 * 238.56428 * 22 17 16 24 24 C 1.50698 * 110.03064 * 359.94633 * 22 17 16 25 25 O 1.20820 * 119.99941 * 84.53521 * 24 22 17 26 26 O 1.34221 * 120.00027 * 264.52482 * 24 22 17 27 27 C 1.45203 * 117.00122 * 180.02562 * 26 24 22 28 28 H 1.09000 * 109.47481 * 300.00127 * 1 2 3 29 29 H 1.09005 * 109.46977 * 60.00201 * 1 2 3 30 30 H 1.08995 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47481 * 239.99873 * 2 1 3 32 32 H 1.09003 * 109.47219 * 120.00286 * 2 1 3 33 33 H 1.08995 * 109.47195 * 210.00420 * 4 3 2 34 34 H 1.09002 * 109.46665 * 330.00310 * 4 3 2 35 35 H 0.96994 * 120.00362 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.46972 * 299.99449 * 15 13 3 37 37 H 1.08996 * 109.47378 * 59.99970 * 15 13 3 38 38 H 1.00904 * 110.99809 * 303.94950 * 16 15 13 39 39 H 1.09000 * 110.48624 * 335.78777 * 19 17 16 40 40 H 1.09002 * 110.48416 * 98.43204 * 19 17 16 41 41 H 1.09004 * 110.75232 * 279.62178 * 20 19 17 42 42 H 1.09003 * 110.75357 * 156.26200 * 20 19 17 43 43 H 1.08995 * 110.48582 * 203.37808 * 21 20 19 44 44 H 1.09003 * 110.59197 * 80.78987 * 21 20 19 45 45 H 1.09000 * 109.46806 * 60.00516 * 27 26 24 46 46 H 1.09001 * 109.46927 * 179.97438 * 27 26 24 47 47 H 1.08995 * 109.47207 * 300.00171 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3429 1.2308 1.0958 7 6 4.1491 2.3895 2.8779 8 7 3.3488 3.1249 3.6186 9 14 5.9135 2.0965 3.4169 10 1 6.7847 3.1626 2.8602 11 1 5.9885 2.1200 4.8999 12 1 6.3700 0.7741 2.9191 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9923 1.3059 -2.4723 16 7 2.3111 2.2058 -3.5889 17 6 2.0776 1.5456 -4.8801 18 1 1.1431 0.9855 -4.8494 19 6 3.2510 0.5998 -5.2099 20 6 3.4322 0.7393 -6.7418 21 6 3.1721 2.2473 -6.9810 22 6 2.0275 2.5931 -6.0063 23 1 1.0689 2.5407 -6.5225 24 6 2.2322 3.9733 -5.4369 25 8 3.3508 4.3911 -5.2528 26 8 1.1717 4.7385 -5.1344 27 6 1.4439 6.0569 -4.5903 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0955 3.1410 1.1384 34 1 1.5817 1.6876 2.0283 35 1 3.6747 3.5147 4.4448 36 1 2.6229 0.4187 -2.5298 37 1 0.9445 1.0114 -2.5303 38 1 1.7860 3.0649 -3.5222 39 1 4.1543 0.9165 -4.6885 40 1 2.9982 -0.4275 -4.9476 41 1 2.7003 0.1318 -7.2742 42 1 4.4466 0.4706 -7.0368 43 1 2.8619 2.4222 -8.0112 44 1 4.0620 2.8317 -6.7471 45 1 2.0257 6.6337 -5.3093 46 1 0.5026 6.5691 -4.3909 47 1 2.0077 5.9579 -3.6627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595902346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:14 Heat of formation + Delta-G solvation = -147.731620 kcal Electronic energy + Delta-G solvation = -27349.449601 eV Core-core repulsion = 23531.156456 eV Total energy + Delta-G solvation = -3818.293144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.90899 -40.71962 -39.14435 -37.37922 -36.96167 -35.34571 -34.80647 -31.63988 -31.03153 -29.99326 -28.61001 -28.31620 -26.37732 -24.63498 -23.85607 -23.49898 -21.56788 -20.57013 -19.93958 -18.77434 -18.63103 -18.17958 -17.78129 -17.36931 -17.11693 -16.76184 -16.47004 -15.95304 -15.68725 -15.56761 -14.81160 -14.71627 -14.47494 -14.45220 -14.27006 -14.10740 -13.65861 -13.36029 -13.19271 -13.06427 -13.03777 -12.99808 -12.67792 -12.52530 -12.38804 -12.16089 -12.10271 -12.04551 -11.88851 -11.83642 -11.81292 -11.71723 -11.50994 -11.38451 -10.66867 -10.57790 -9.51785 -9.38777 -8.24185 -6.38820 1.19744 1.33476 1.37590 1.46624 1.75372 1.83462 2.23673 2.39660 3.04998 3.09477 3.42981 3.53813 3.71600 3.85357 4.10015 4.18987 4.24540 4.26536 4.28866 4.36897 4.40378 4.43901 4.45559 4.47703 4.58281 4.65490 4.66987 4.80266 4.91583 4.99053 5.03044 5.04922 5.09944 5.20202 5.21935 5.24093 5.39043 5.41629 5.52745 5.56871 5.82745 5.92398 6.05577 6.15037 6.69222 6.77384 6.81441 7.27308 7.50757 8.82815 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003649 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.863847 B = 7672.150360 C = 8029.108356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.261 1.261 13 C 0.491 3.509 14 O -0.591 6.591 15 C 0.060 3.940 16 N -0.694 5.694 17 C 0.093 3.907 18 H 0.092 0.908 19 C -0.119 4.119 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.083 4.083 23 H 0.139 0.861 24 C 0.461 3.539 25 O -0.528 6.528 26 O -0.368 6.368 27 C 0.032 3.968 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.071 0.929 33 H -0.008 1.008 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.333 0.667 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.131 0.869 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 -8.958 -22.950 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.210 1.210 11 H -0.196 1.196 12 H -0.185 1.185 13 C 0.279 3.721 14 O -0.471 6.471 15 C -0.071 4.071 16 N -0.329 5.329 17 C -0.016 4.016 18 H 0.110 0.890 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.103 4.103 23 H 0.157 0.843 24 C 0.304 3.696 25 O -0.415 6.415 26 O -0.284 6.284 27 C -0.062 4.062 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.010 0.990 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.149 0.851 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.809 -8.261 -22.678 25.367 hybrid contribution 0.269 1.031 1.258 1.649 sum -7.539 -7.230 -21.420 23.831 Atomic orbital electron populations 1.22147 0.94419 1.03600 1.01598 1.21772 0.95395 0.81199 1.04000 1.48280 1.63982 1.15203 1.06035 1.18656 0.95203 0.91344 0.80547 1.21715 0.97961 1.31986 1.06418 0.93088 1.25846 1.02340 0.94480 0.96436 1.70047 1.37685 1.34287 1.14811 0.85444 0.79083 0.78815 0.77640 1.21011 1.19643 1.18487 1.21344 0.77351 0.86697 0.86682 1.90652 1.47524 1.21004 1.87943 1.21855 1.02431 0.96112 0.86714 1.60379 1.63854 1.06880 1.01816 1.22429 1.00196 0.93491 0.85459 0.89003 1.22526 0.97089 0.99055 0.97059 1.22441 1.03224 0.94359 0.94630 1.22442 0.96122 0.98102 0.98426 1.22145 1.04718 0.85689 0.97704 0.84279 1.24146 0.82525 0.88467 0.74420 1.90660 1.26873 1.73984 1.49996 1.86484 1.37797 1.29342 1.74800 1.23401 1.04491 0.80220 0.98042 0.94474 0.92119 0.88375 0.88010 0.91052 0.98973 0.95895 0.92411 0.86286 0.89088 0.84632 0.93186 0.88953 0.88130 0.90529 0.88371 0.92666 0.91458 0.85099 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.95 5.93 86.38 0.51 3.46 16 3 N -0.60 -26.10 2.46 -826.16 -2.03 -28.13 16 4 C 0.26 14.73 5.16 85.63 0.44 15.18 16 5 C -0.54 -32.44 9.39 25.60 0.24 -32.20 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 9 Si 0.97 46.54 29.54 68.60 2.03 48.57 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.49 21.31 7.71 87.66 0.68 21.99 16 14 O -0.59 -32.86 15.78 -3.05 -0.05 -32.91 16 15 C 0.06 1.73 4.55 85.55 0.39 2.12 16 16 N -0.69 -21.00 5.25 -491.83 -2.58 -23.58 16 17 C 0.09 1.81 3.21 45.64 0.15 1.96 16 18 H 0.09 1.21 7.96 -2.39 -0.02 1.19 16 19 C -0.12 -2.09 6.04 31.67 0.19 -1.90 16 20 C -0.11 -1.37 6.91 31.89 0.22 -1.15 16 21 C -0.11 -1.88 6.32 31.67 0.20 -1.68 16 22 C -0.08 -1.55 3.40 -10.81 -0.04 -1.59 16 23 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 24 C 0.46 12.97 4.73 71.24 0.34 13.30 16 25 O -0.53 -19.42 15.52 21.98 0.34 -19.08 16 26 O -0.37 -9.64 10.19 -51.33 -0.52 -10.16 16 27 C 0.03 0.78 10.56 113.37 1.20 1.97 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.30 7.22 -2.38 -0.02 1.28 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 34 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.12 2.91 7.06 -2.39 -0.02 2.89 16 37 H 0.09 1.94 7.14 -2.39 -0.02 1.93 16 38 H 0.33 11.40 6.15 -89.69 -0.55 10.85 16 39 H 0.05 1.26 8.05 -2.39 -0.02 1.24 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 1.31 6.92 -2.39 -0.02 1.30 16 45 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 46 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 Total: -1.00 -86.21 380.96 3.59 -82.62 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.40 Total: 20.74 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.71 Total: 19.36 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.33 Total: -109.14 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.23 Total: -62.15 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -86.21 3.59 -82.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595902346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.112 kcal (2) G-P(sol) polarization free energy of solvation -86.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds