Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.45082 * 2 1 4 4 C 1.53034 * 109.46285 * 240.03981 * 2 1 3 5 5 C 1.53186 * 109.31138 * 178.61153 * 4 2 1 6 6 N 1.46924 * 108.77551 * 54.63608 * 5 4 2 7 7 C 1.34775 * 120.63150 * 126.37033 * 6 5 4 8 8 O 1.21351 * 120.00255 * 172.93823 * 7 6 5 9 9 C 1.49453 * 120.00293 * 352.93228 * 7 6 5 10 10 O 1.21351 * 119.99830 * 353.60401 * 9 7 6 11 11 N 1.34776 * 120.00249 * 173.59705 * 9 7 6 12 12 C 1.46501 * 119.99837 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46820 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47068 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99457 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00372 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99790 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47033 * 90.00381 * 19 17 15 21 21 H 1.48497 * 109.46960 * 210.00222 * 19 17 15 22 22 H 1.48501 * 109.47209 * 329.99990 * 19 17 15 23 23 C 1.46928 * 118.73853 * 306.38860 * 6 5 4 24 24 C 1.53042 * 109.46041 * 119.96576 * 2 1 3 25 25 H 1.09003 * 109.49335 * 61.43804 * 24 2 1 26 26 C 1.53005 * 109.49863 * 301.34454 * 24 2 1 27 27 O 1.42893 * 109.46836 * 175.16176 * 26 24 2 28 28 H 1.08993 * 109.47134 * 300.02693 * 1 2 3 29 29 H 1.08998 * 109.47002 * 60.03671 * 1 2 3 30 30 H 1.09004 * 109.46552 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49611 * 298.56279 * 4 2 1 32 32 H 1.08999 * 109.49705 * 58.65877 * 4 2 1 33 33 H 1.09006 * 109.58643 * 174.42193 * 5 4 2 34 34 H 1.08999 * 109.58980 * 294.84321 * 5 4 2 35 35 H 0.97005 * 120.00127 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47064 * 299.99970 * 12 11 9 37 37 H 1.08994 * 109.47465 * 60.00647 * 12 11 9 38 38 H 1.08994 * 109.47568 * 300.00012 * 13 12 11 39 39 H 1.09002 * 109.47029 * 60.00032 * 13 12 11 40 40 H 1.09001 * 109.47542 * 299.99973 * 14 13 12 41 41 H 1.09002 * 109.46998 * 60.00224 * 14 13 12 42 42 H 0.97002 * 119.99754 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58538 * 293.82398 * 23 6 5 44 44 H 1.08994 * 109.58625 * 173.39833 * 23 6 5 45 45 H 1.09002 * 109.46573 * 295.15893 * 26 24 2 46 46 H 1.08999 * 109.47289 * 55.15647 * 26 24 2 47 47 H 0.96707 * 113.99770 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7206 -1.2501 5 6 3.5714 -0.6883 -1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9616 -2.2575 0.0000 8 8 5.4607 -2.6260 1.0429 9 6 5.3377 -2.9226 -1.2845 10 8 4.7556 -2.6352 -2.3097 11 7 6.3236 -3.8414 -1.3042 12 6 6.6926 -4.4928 -2.5634 13 6 7.8292 -5.4853 -2.3101 14 6 8.2143 -6.1661 -3.6250 15 6 9.3334 -7.1442 -3.3755 16 1 9.7305 -7.2674 -2.3787 17 6 9.8509 -7.8808 -4.4198 18 7 10.8271 -8.7346 -4.2018 19 14 9.1644 -7.6670 -6.1439 20 1 9.9199 -6.6004 -6.8487 21 1 9.2966 -8.9435 -6.8910 22 1 7.7311 -7.2873 -6.0624 23 6 3.5714 -0.6885 1.2643 24 6 2.0399 -0.7207 1.2501 25 1 1.6979 -1.7557 1.2382 26 6 1.5027 -0.0190 2.4991 27 8 1.8853 -0.7566 3.6615 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3632 -1.0277 0.0005 31 1 1.6980 -1.7554 -1.2384 32 1 1.6573 -0.2205 -2.1398 33 1 3.9418 -1.2842 -2.0984 34 1 3.9143 0.3412 -1.3673 35 1 6.7887 -4.0713 -0.4846 36 1 5.8294 -5.0241 -2.9642 37 1 7.0205 -3.7396 -3.2797 38 1 8.6925 -4.9544 -1.9090 39 1 7.5010 -6.2385 -1.5938 40 1 7.3508 -6.6972 -4.0257 41 1 8.5424 -5.4131 -4.3415 42 1 11.1910 -9.2531 -4.9365 43 1 3.9142 0.3410 1.3675 44 1 3.9417 -1.2844 2.0984 45 1 1.9155 0.9883 2.5557 46 1 0.4154 0.0364 2.4454 47 1 1.5783 -0.3684 4.4924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598678509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -123.806822 kcal Electronic energy + Delta-G solvation = -26116.078708 eV Core-core repulsion = 22298.823021 eV Total energy + Delta-G solvation = -3817.255687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12951 -39.40135 -38.22362 -36.88216 -35.86171 -34.34578 -33.31522 -31.89792 -31.50166 -28.93879 -27.71974 -26.69587 -24.78960 -23.31086 -22.48641 -21.96062 -20.91556 -20.33973 -19.61303 -17.80481 -17.72597 -17.11052 -16.71812 -16.15449 -15.92108 -15.55815 -15.16642 -14.99109 -14.72760 -14.44418 -14.26408 -14.11770 -13.96859 -13.65857 -13.33437 -13.04685 -12.80846 -12.71762 -12.22430 -12.11657 -12.03546 -11.98695 -11.74345 -11.36393 -11.22794 -11.12258 -10.93265 -10.77831 -10.72854 -10.38887 -10.12236 -9.95567 -9.75609 -9.25048 -9.19756 -9.04656 -8.93830 -8.56674 -6.06881 -4.05920 1.34362 2.24732 3.13224 3.30020 3.37714 3.40996 3.42544 3.70325 4.27096 4.27923 4.33946 4.43107 4.52463 4.59888 4.85445 4.97056 5.01546 5.05957 5.11035 5.20158 5.26705 5.28878 5.41121 5.41377 5.49947 5.54354 5.54823 5.69225 5.71500 5.75208 5.80297 5.91104 6.03826 6.10547 6.32396 6.37472 6.60510 6.72993 6.91394 7.18831 7.19987 7.24650 7.32538 7.68584 7.74279 7.97171 8.49464 8.97297 9.54809 11.06330 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.002254 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.865945 B =12419.341733 C =13110.131652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.123 4.123 5 C 0.045 3.955 6 N -0.583 5.583 7 C 0.508 3.492 8 O -0.519 6.519 9 C 0.506 3.494 10 O -0.516 6.516 11 N -0.687 5.687 12 C 0.110 3.890 13 C -0.116 4.116 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.117 3.883 24 C -0.096 4.096 25 H 0.083 0.917 26 C 0.080 3.920 27 O -0.571 6.571 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.062 0.938 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.239 22.301 11.085 33.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.161 4.161 5 C -0.076 4.076 6 N -0.316 5.316 7 C 0.291 3.709 8 O -0.395 6.395 9 C 0.287 3.713 10 O -0.396 6.396 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.154 4.154 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.005 4.005 24 C -0.116 4.116 25 H 0.102 0.898 26 C 0.002 3.998 27 O -0.376 6.376 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.081 0.919 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.951 21.759 10.365 32.600 hybrid contribution -0.417 0.430 -0.081 0.604 sum -22.368 22.189 10.284 33.143 Atomic orbital electron populations 1.21924 0.94844 1.02220 1.01816 1.21163 0.95900 0.99546 0.94150 0.90819 1.21898 0.95432 1.01411 0.97365 1.23315 0.94595 1.01102 0.88537 1.47941 1.41729 1.33534 1.08426 1.20173 0.80399 0.80787 0.89572 1.90767 1.52220 1.63285 1.33213 1.20103 0.81214 0.81148 0.88853 1.90282 1.52403 1.62120 1.34762 1.46073 1.34649 1.39137 1.13876 1.21881 0.99311 0.96023 0.83978 1.21747 0.95507 0.96732 1.01389 1.19502 0.97201 0.95762 0.92338 1.21089 1.16957 1.21133 0.96900 0.90934 1.25036 0.94610 0.94768 0.99114 1.69913 1.26183 1.25630 1.32346 0.86768 0.80253 0.77559 0.84653 1.20253 1.21374 1.18906 1.21697 0.92869 0.99355 0.86594 1.21541 0.95377 1.01328 0.93327 0.89844 1.22257 0.98346 0.94037 0.85160 1.86528 1.80385 1.54273 1.16463 0.92498 0.92283 0.92416 0.91297 0.90313 0.82297 0.91926 0.75002 0.90982 0.90958 0.91794 0.91754 0.96237 0.96673 0.92678 0.91345 0.88090 0.93495 0.92785 0.77343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.82 37.16 0.33 -0.48 16 2 C -0.09 -0.58 2.23 -90.58 -0.20 -0.78 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.97 5.36 -26.62 -0.14 -1.11 16 5 C 0.05 0.44 6.27 -3.71 -0.02 0.42 16 6 N -0.58 -6.66 2.97 -173.28 -0.51 -7.18 16 7 C 0.51 7.05 7.74 -11.58 -0.09 6.96 16 8 O -0.52 -8.28 15.94 5.50 0.09 -8.19 16 9 C 0.51 7.25 7.78 -11.58 -0.09 7.16 16 10 O -0.52 -7.82 13.10 5.50 0.07 -7.75 16 11 N -0.69 -9.80 5.55 -60.73 -0.34 -10.14 16 12 C 0.11 1.73 5.67 -4.04 -0.02 1.71 16 13 C -0.12 -2.12 5.27 -26.73 -0.14 -2.27 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 23 C 0.12 1.16 5.53 -3.71 -0.02 1.14 16 24 C -0.10 -0.77 2.12 -90.50 -0.19 -0.97 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 C 0.08 0.50 6.18 37.16 0.23 0.73 16 27 O -0.57 -4.34 13.30 -35.23 -0.47 -4.81 16 28 H 0.06 0.25 6.30 -51.93 -0.33 -0.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.16 1.88 3.78 -56.75 -0.21 1.66 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 5.54 7.96 -40.82 -0.32 5.21 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.23 6.90 -51.93 -0.36 0.87 16 45 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.05 0.27 6.15 -51.93 -0.32 -0.05 16 47 H 0.38 1.13 9.12 45.56 0.42 1.55 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -33.15 372.31 -7.33 -40.48 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.98 Total: 3.04 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.91 Total: -0.99 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.08 Total: -44.21 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.31 Total: -20.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.15 -7.33 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598678509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.324 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds