Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.45082 * 2 1 4 4 C 1.53034 * 109.46285 * 240.03981 * 2 1 3 5 5 C 1.53186 * 109.31138 * 178.61153 * 4 2 1 6 6 N 1.46924 * 108.77551 * 54.63608 * 5 4 2 7 7 C 1.34775 * 120.63150 * 126.37033 * 6 5 4 8 8 O 1.21351 * 120.00255 * 172.93823 * 7 6 5 9 9 C 1.49453 * 120.00293 * 352.93228 * 7 6 5 10 10 O 1.21351 * 119.99830 * 353.60401 * 9 7 6 11 11 N 1.34776 * 120.00249 * 173.59705 * 9 7 6 12 12 C 1.46501 * 119.99837 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46820 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47068 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47510 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99457 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00372 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99790 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47033 * 90.00381 * 19 17 15 21 21 H 1.48497 * 109.46960 * 210.00222 * 19 17 15 22 22 H 1.48501 * 109.47209 * 329.99990 * 19 17 15 23 23 C 1.46928 * 118.73853 * 306.38860 * 6 5 4 24 24 C 1.53042 * 109.46041 * 119.96576 * 2 1 3 25 25 H 1.09003 * 109.49335 * 61.43804 * 24 2 1 26 26 C 1.53005 * 109.49863 * 301.34454 * 24 2 1 27 27 O 1.42893 * 109.46836 * 175.16176 * 26 24 2 28 28 H 1.08993 * 109.47134 * 300.02693 * 1 2 3 29 29 H 1.08998 * 109.47002 * 60.03671 * 1 2 3 30 30 H 1.09004 * 109.46552 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.49611 * 298.56279 * 4 2 1 32 32 H 1.08999 * 109.49705 * 58.65877 * 4 2 1 33 33 H 1.09006 * 109.58643 * 174.42193 * 5 4 2 34 34 H 1.08999 * 109.58980 * 294.84321 * 5 4 2 35 35 H 0.97005 * 120.00127 * 0.02562 * 11 9 7 36 36 H 1.08995 * 109.47064 * 299.99970 * 12 11 9 37 37 H 1.08994 * 109.47465 * 60.00647 * 12 11 9 38 38 H 1.08994 * 109.47568 * 300.00012 * 13 12 11 39 39 H 1.09002 * 109.47029 * 60.00032 * 13 12 11 40 40 H 1.09001 * 109.47542 * 299.99973 * 14 13 12 41 41 H 1.09002 * 109.46998 * 60.00224 * 14 13 12 42 42 H 0.97002 * 119.99754 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58538 * 293.82398 * 23 6 5 44 44 H 1.08994 * 109.58625 * 173.39833 * 23 6 5 45 45 H 1.09002 * 109.46573 * 295.15893 * 26 24 2 46 46 H 1.08999 * 109.47289 * 55.15647 * 26 24 2 47 47 H 0.96707 * 113.99770 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7206 -1.2501 5 6 3.5714 -0.6883 -1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9616 -2.2575 0.0000 8 8 5.4607 -2.6260 1.0429 9 6 5.3377 -2.9226 -1.2845 10 8 4.7556 -2.6352 -2.3097 11 7 6.3236 -3.8414 -1.3042 12 6 6.6926 -4.4928 -2.5634 13 6 7.8292 -5.4853 -2.3101 14 6 8.2143 -6.1661 -3.6250 15 6 9.3334 -7.1442 -3.3755 16 1 9.7305 -7.2674 -2.3787 17 6 9.8509 -7.8808 -4.4198 18 7 10.8271 -8.7346 -4.2018 19 14 9.1644 -7.6670 -6.1439 20 1 9.9199 -6.6004 -6.8487 21 1 9.2966 -8.9435 -6.8910 22 1 7.7311 -7.2873 -6.0624 23 6 3.5714 -0.6885 1.2643 24 6 2.0399 -0.7207 1.2501 25 1 1.6979 -1.7557 1.2382 26 6 1.5027 -0.0190 2.4991 27 8 1.8853 -0.7566 3.6615 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5133 -0.8903 30 1 -0.3632 -1.0277 0.0005 31 1 1.6980 -1.7554 -1.2384 32 1 1.6573 -0.2205 -2.1398 33 1 3.9418 -1.2842 -2.0984 34 1 3.9143 0.3412 -1.3673 35 1 6.7887 -4.0713 -0.4846 36 1 5.8294 -5.0241 -2.9642 37 1 7.0205 -3.7396 -3.2797 38 1 8.6925 -4.9544 -1.9090 39 1 7.5010 -6.2385 -1.5938 40 1 7.3508 -6.6972 -4.0257 41 1 8.5424 -5.4131 -4.3415 42 1 11.1910 -9.2531 -4.9365 43 1 3.9142 0.3410 1.3675 44 1 3.9417 -1.2844 2.0984 45 1 1.9155 0.9883 2.5557 46 1 0.4154 0.0364 2.4454 47 1 1.5783 -0.3684 4.4924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598678509.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -149.551121 kcal Electronic energy + Delta-G solvation = -26117.195065 eV Core-core repulsion = 22298.823021 eV Total energy + Delta-G solvation = -3818.372044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14552 -40.28386 -39.21090 -37.61702 -37.06394 -35.42525 -34.88502 -33.31412 -32.57831 -29.76407 -29.16973 -27.52099 -25.88803 -24.52574 -23.15865 -23.06345 -22.33389 -21.34333 -20.57725 -19.04310 -18.60043 -18.33561 -18.10062 -17.26736 -16.94682 -16.47706 -16.31788 -16.18446 -15.72473 -15.45176 -15.29307 -15.10961 -14.78061 -14.77222 -14.53309 -14.25532 -13.83191 -13.78796 -13.63687 -13.39376 -12.77988 -12.77153 -12.71056 -12.67099 -12.52093 -12.03830 -11.94160 -11.85680 -11.76983 -11.60802 -11.43962 -11.39270 -11.32653 -10.86644 -10.75189 -10.35998 -10.09998 -9.83698 -8.28060 -6.32698 0.23320 1.21191 1.38927 1.40776 1.52576 2.02570 2.37970 2.40697 3.07614 3.18830 3.26839 3.67336 3.75933 3.95004 3.98463 4.00746 4.17277 4.22233 4.38234 4.45587 4.47628 4.49233 4.56528 4.65398 4.69542 4.73517 4.85417 4.86356 4.90149 4.97101 4.99211 5.02520 5.06222 5.13436 5.26632 5.35906 5.43290 5.47746 5.51794 5.55446 5.65800 5.91757 6.16750 6.28328 6.63006 6.75718 6.85320 6.93102 7.31958 8.88558 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.002254 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.865945 B =12419.341733 C =13110.131652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.091 0.909 4 C -0.120 4.120 5 C 0.042 3.958 6 N -0.576 5.576 7 C 0.504 3.496 8 O -0.549 6.549 9 C 0.508 3.492 10 O -0.524 6.524 11 N -0.686 5.686 12 C 0.124 3.876 13 C -0.106 4.106 14 C -0.010 4.010 15 C -0.533 4.533 16 H 0.033 0.967 17 C 0.001 3.999 18 N -0.952 5.952 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.243 1.243 23 C 0.115 3.885 24 C -0.093 4.093 25 H 0.057 0.943 26 C 0.081 3.919 27 O -0.598 6.598 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.083 0.917 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.721 25.024 10.135 36.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.109 0.891 4 C -0.158 4.158 5 C -0.078 4.078 6 N -0.308 5.308 7 C 0.286 3.714 8 O -0.427 6.427 9 C 0.289 3.711 10 O -0.403 6.403 11 N -0.337 5.337 12 C 0.002 3.998 13 C -0.144 4.144 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.051 0.949 17 C -0.196 4.196 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.007 4.007 24 C -0.113 4.113 25 H 0.076 0.924 26 C 0.004 3.996 27 O -0.407 6.407 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -24.478 24.528 9.434 35.914 hybrid contribution 0.368 -0.400 0.318 0.629 sum -24.110 24.128 9.751 35.476 Atomic orbital electron populations 1.21901 0.93668 1.01928 1.03007 1.21136 0.96787 0.99814 0.92359 0.89087 1.21890 0.93915 1.00909 0.99081 1.23362 0.95937 1.01541 0.86931 1.48113 1.40455 1.32403 1.09803 1.20116 0.80954 0.81401 0.88896 1.90753 1.53651 1.64468 1.33848 1.20192 0.80919 0.80945 0.89010 1.90318 1.52587 1.62354 1.35071 1.45966 1.34916 1.39203 1.13593 1.21592 0.98170 0.95525 0.84560 1.21528 0.96632 0.97106 0.99091 1.19455 0.95423 0.95092 0.94822 1.21481 1.18180 1.22169 0.95286 0.94879 1.26061 0.94938 0.94393 1.04203 1.70075 1.28122 1.27157 1.33948 0.85630 0.80641 0.77733 0.78483 1.19107 1.21281 1.16586 1.21821 0.94330 0.99592 0.84909 1.21524 0.93745 1.00523 0.95472 0.92420 1.22307 0.99285 0.94223 0.83827 1.86485 1.80947 1.55425 1.17872 0.91128 0.91300 0.93471 0.93081 0.88425 0.84052 0.89897 0.74578 0.90756 0.90333 0.91851 0.92070 0.95616 0.95586 0.92545 0.89355 0.90722 0.91641 0.91133 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.82 71.98 0.63 -0.54 16 2 C -0.08 -0.86 2.23 -10.77 -0.02 -0.88 16 3 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 4 C -0.12 -1.65 5.36 30.67 0.16 -1.49 16 5 C 0.04 0.75 6.27 86.36 0.54 1.29 16 6 N -0.58 -12.72 2.97 -820.51 -2.44 -15.16 16 7 C 0.50 13.98 7.74 87.27 0.68 14.66 16 8 O -0.55 -17.87 15.94 -3.25 -0.05 -17.92 16 9 C 0.51 14.30 7.78 87.27 0.68 14.98 16 10 O -0.52 -15.36 13.10 -3.25 -0.04 -15.40 16 11 N -0.69 -19.16 5.55 -464.42 -2.58 -21.73 16 12 C 0.12 3.72 5.67 86.38 0.49 4.21 16 13 C -0.11 -3.82 5.27 30.59 0.16 -3.65 16 14 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 15 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 16 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 17 C 0.00 0.04 5.47 84.65 0.46 0.50 16 18 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 19 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 23 C 0.12 2.18 5.53 86.36 0.48 2.66 16 24 C -0.09 -1.36 2.12 -10.72 -0.02 -1.39 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 C 0.08 0.82 6.18 71.98 0.45 1.27 16 27 O -0.60 -8.40 13.30 -148.98 -1.98 -10.38 16 28 H 0.07 0.38 6.30 -2.39 -0.02 0.37 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 3.16 3.78 -78.83 -0.30 2.86 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.42 11.13 7.96 -92.70 -0.74 10.40 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 41 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.85 6.90 -2.39 -0.02 1.83 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 46 H 0.07 0.49 6.15 -2.39 -0.01 0.47 16 47 H 0.40 1.80 9.12 -74.05 -0.68 1.12 16 Total: -1.00 -73.18 372.31 -0.63 -73.81 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.77 Total: 19.51 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.05 Total: 1.18 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.72 Total: -96.50 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -2.08 Total: -43.70 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -73.18 -0.63 -73.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598678509.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.740 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds