Wall clock time and date at job start Fri Apr 10 2020 18:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99837 * 2 1 4 4 O 1.20815 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47293 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.46999 * 54.99970 * 6 5 3 8 8 C 1.53001 * 109.46812 * 295.00174 * 6 5 3 9 9 C 1.53002 * 109.47384 * 175.00030 * 6 5 3 10 10 C 1.50702 * 109.46868 * 184.99994 * 9 6 5 11 11 O 1.21278 * 120.00423 * 359.97438 * 10 9 6 12 12 N 1.34774 * 119.99692 * 180.02562 * 10 9 6 13 13 C 1.47081 * 120.88114 * 0.02562 * 12 10 9 14 14 C 1.53235 * 108.52054 * 231.16282 * 13 12 10 15 15 N 1.46906 * 109.34079 * 306.16959 * 14 13 12 16 16 C 1.46898 * 110.99801 * 187.25100 * 15 14 13 17 17 C 1.50700 * 109.46835 * 170.00134 * 16 15 14 18 18 H 1.08001 * 120.00412 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00313 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99363 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00176 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46698 * 120.00167 * 21 19 17 24 24 H 1.48495 * 109.46897 * 239.99961 * 21 19 17 25 25 C 1.46896 * 111.26658 * 63.10656 * 15 14 13 26 26 C 1.47082 * 120.88386 * 179.97438 * 12 10 9 27 27 H 1.08998 * 109.46594 * 299.99769 * 1 2 3 28 28 H 1.08998 * 109.47289 * 59.99896 * 1 2 3 29 29 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47175 * 59.99840 * 5 3 2 31 31 H 1.09006 * 109.47312 * 300.00122 * 5 3 2 32 32 H 1.08999 * 109.47600 * 59.99413 * 8 6 5 33 33 H 1.08999 * 109.47184 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47172 * 299.99690 * 8 6 5 35 35 H 1.09000 * 109.46797 * 65.00059 * 9 6 5 36 36 H 1.09000 * 109.46880 * 304.99851 * 9 6 5 37 37 H 1.09002 * 109.63012 * 111.45725 * 13 12 10 38 38 H 1.09000 * 109.63054 * 350.86988 * 13 12 10 39 39 H 1.08997 * 109.49554 * 186.21402 * 14 13 12 40 40 H 1.08997 * 109.49382 * 66.13002 * 14 13 12 41 41 H 1.08993 * 109.47768 * 290.00114 * 16 15 14 42 42 H 1.09004 * 109.47075 * 50.00431 * 16 15 14 43 43 H 0.97003 * 119.99498 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.49756 * 56.85119 * 25 15 14 45 45 H 1.08998 * 109.49494 * 176.90931 * 25 15 14 46 46 H 1.09001 * 109.62379 * 9.12792 * 26 12 10 47 47 H 1.08998 * 109.62760 * 248.54863 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.5383 3.2571 0.8425 8 6 3.5596 3.4048 -1.3066 9 6 5.5229 2.8236 0.1253 10 6 5.9401 4.2664 0.2496 11 8 5.1022 5.1431 0.2386 12 7 7.2446 4.5825 0.3718 13 6 8.2770 3.5350 0.3857 14 6 9.1757 3.7535 1.6075 15 7 9.6877 5.1304 1.5949 16 6 10.6877 5.3298 2.6524 17 6 11.3650 6.6620 2.4584 18 1 11.0814 7.2968 1.6319 19 6 12.3476 7.0700 3.3353 20 7 12.6940 6.2964 4.3409 21 14 13.1877 8.7210 3.0944 22 1 12.6213 9.3947 1.8985 23 1 12.9641 9.5696 4.2924 24 1 14.6450 8.5113 2.9014 25 6 8.5959 6.1060 1.7120 26 6 7.6735 5.9840 0.4939 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8892 32 1 2.4748 3.3467 -1.3958 33 1 3.8683 4.4502 -1.3059 34 1 4.0215 2.8898 -2.1489 35 1 5.9841 2.3870 -0.7606 36 1 5.8446 2.2748 1.0104 37 1 8.8743 3.5976 -0.5240 38 1 7.8038 2.5552 0.4498 39 1 10.0113 3.0545 1.5741 40 1 8.5988 3.5883 2.5175 41 1 10.1966 5.3102 3.6252 42 1 11.4309 4.5339 2.6044 43 1 13.3855 6.5833 4.9576 44 1 8.0270 5.9081 2.6205 45 1 9.0109 7.1130 1.7549 46 1 6.8012 6.6234 0.6294 47 1 8.2128 6.2815 -0.4054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:18 Heat of formation + Delta-G solvation = -121.469248 kcal Electronic energy + Delta-G solvation = -26236.853950 eV Core-core repulsion = 22419.699628 eV Total energy + Delta-G solvation = -3817.154323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89701 -40.06136 -37.82776 -37.01758 -35.36862 -34.42458 -32.42887 -31.05973 -29.77355 -28.69533 -27.47316 -27.20183 -25.42794 -23.36473 -22.42684 -21.89202 -20.72458 -19.98477 -18.64729 -17.81900 -17.30971 -16.87597 -16.61063 -16.38414 -15.75630 -15.57139 -14.84751 -14.69804 -14.47048 -14.12572 -13.95327 -13.83199 -13.61444 -13.52044 -13.02819 -12.82988 -12.54595 -12.35964 -12.24984 -12.14352 -11.98532 -11.47090 -11.31582 -11.19497 -11.14056 -11.09036 -10.93996 -10.86147 -10.75061 -10.62923 -10.54070 -10.51210 -9.90475 -9.56257 -9.26542 -8.51891 -8.42562 -7.35743 -6.08321 -4.10014 1.92028 2.36638 2.73441 3.14527 3.28271 3.36014 3.40602 4.27850 4.37735 4.43675 4.59473 4.71233 4.74509 4.74635 4.82089 4.98265 5.09157 5.14280 5.19960 5.21445 5.26673 5.31433 5.38828 5.49057 5.52255 5.63766 5.66396 5.80118 5.89433 5.96951 6.00061 6.13114 6.17279 6.20373 6.37089 6.44216 6.52190 6.73806 7.19241 7.25164 7.46215 7.56737 7.72991 7.98437 8.09301 8.30243 8.45296 8.97581 9.54764 11.02540 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.037333 B = 0.002209 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.824582 B =12674.535805 C =12996.356910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.498 6.498 5 C -0.111 4.111 6 C -0.064 4.064 7 H 0.089 0.911 8 C -0.160 4.160 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.543 6.543 12 N -0.609 5.609 13 C 0.112 3.888 14 C 0.039 3.961 15 N -0.536 5.536 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.051 3.949 26 C 0.115 3.885 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.027 0.973 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.261 0.739 44 H 0.024 0.976 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 -14.651 -9.883 25.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.385 6.385 5 C -0.149 4.149 6 C -0.083 4.083 7 H 0.107 0.893 8 C -0.217 4.217 9 C -0.177 4.177 10 C 0.301 3.699 11 O -0.421 6.421 12 N -0.343 5.343 13 C -0.011 4.011 14 C -0.091 4.091 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.078 4.078 26 C -0.007 4.007 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.115 0.885 46 H 0.106 0.894 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.790 -13.812 -10.183 25.446 hybrid contribution 0.156 0.600 0.890 1.085 sum -18.634 -13.212 -9.293 24.660 Atomic orbital electron populations 1.23255 0.76380 1.03616 1.02614 1.86510 1.23461 1.33788 1.84317 1.23827 0.92330 0.81239 0.72403 1.90679 1.67208 1.36107 1.44468 1.21538 0.87454 0.99936 1.05946 1.20718 0.93499 0.92468 1.01629 0.89303 1.22076 1.02255 1.02638 0.94682 1.21741 0.96798 0.94808 1.04305 1.20489 0.81887 0.91222 0.76255 1.90660 1.50317 1.50436 1.50712 1.48265 1.05709 1.08462 1.71829 1.21921 0.89386 0.89954 0.99870 1.22400 0.97586 0.93586 0.95499 1.62088 1.12626 1.00306 1.51057 1.19731 0.88935 0.97881 0.86604 1.21181 1.19461 1.02593 1.11520 0.91728 1.24999 0.96919 0.97584 0.95130 1.69967 1.31233 1.37076 1.15455 0.86431 0.79284 0.83608 0.78053 1.19608 1.21114 1.20997 1.22348 0.91579 0.99163 0.94698 1.21849 0.98270 0.81336 0.99288 0.91877 0.91902 0.88158 0.87461 0.87471 0.91509 0.90268 0.93726 0.88643 0.88704 0.90586 0.90160 0.90035 0.95528 0.99112 0.95022 0.92930 0.95783 0.88533 0.89423 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.12 10.57 -39.26 -0.41 -3.53 16 3 C 0.46 4.45 7.68 36.01 0.28 4.73 16 4 O -0.50 -6.39 13.72 -18.74 -0.26 -6.65 16 5 C -0.11 -0.79 5.29 -27.88 -0.15 -0.94 16 6 C -0.06 -0.64 1.68 -90.62 -0.15 -0.79 16 7 H 0.09 1.12 7.77 -51.93 -0.40 0.71 16 8 C -0.16 -1.80 8.67 37.16 0.32 -1.48 16 9 C -0.14 -1.27 3.54 -27.88 -0.10 -1.36 16 10 C 0.51 7.12 7.42 -10.99 -0.08 7.04 16 11 O -0.54 -9.37 13.42 5.56 0.07 -9.30 16 12 N -0.61 -8.73 3.01 -172.43 -0.52 -9.25 16 13 C 0.11 1.38 6.50 -3.60 -0.02 1.36 16 14 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 15 N -0.54 -10.86 4.62 -235.74 -1.09 -11.95 16 16 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 17 C -0.51 -13.86 8.41 -34.44 -0.29 -14.15 16 18 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.05 0.97 5.46 -3.68 -0.02 0.95 16 26 C 0.11 1.85 6.60 -3.58 -0.02 1.83 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.82 5.96 -51.93 -0.31 0.51 16 33 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.68 8.00 -51.93 -0.42 0.26 16 36 H 0.09 0.71 7.66 -51.93 -0.40 0.32 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.71 6.02 -51.93 -0.31 0.39 16 39 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 46 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -33.50 373.10 -8.03 -41.52 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.85 Total: -2.61 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 0.69 Total: 5.33 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.87 Total: -46.63 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.60 Total: -19.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.50 -8.03 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.946 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds