Wall clock time and date at job start Fri Apr 10 2020 18:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34230 * 116.99837 * 2 1 4 4 O 1.20815 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99760 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47293 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.46999 * 54.99970 * 6 5 3 8 8 C 1.53001 * 109.46812 * 295.00174 * 6 5 3 9 9 C 1.53002 * 109.47384 * 175.00030 * 6 5 3 10 10 C 1.50702 * 109.46868 * 184.99994 * 9 6 5 11 11 O 1.21278 * 120.00423 * 359.97438 * 10 9 6 12 12 N 1.34774 * 119.99692 * 180.02562 * 10 9 6 13 13 C 1.47081 * 120.88114 * 0.02562 * 12 10 9 14 14 C 1.53235 * 108.52054 * 231.16282 * 13 12 10 15 15 N 1.46906 * 109.34079 * 306.16959 * 14 13 12 16 16 C 1.46898 * 110.99801 * 187.25100 * 15 14 13 17 17 C 1.50700 * 109.46835 * 170.00134 * 16 15 14 18 18 H 1.08001 * 120.00412 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00313 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99363 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00176 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46698 * 120.00167 * 21 19 17 24 24 H 1.48495 * 109.46897 * 239.99961 * 21 19 17 25 25 C 1.46896 * 111.26658 * 63.10656 * 15 14 13 26 26 C 1.47082 * 120.88386 * 179.97438 * 12 10 9 27 27 H 1.08998 * 109.46594 * 299.99769 * 1 2 3 28 28 H 1.08998 * 109.47289 * 59.99896 * 1 2 3 29 29 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47175 * 59.99840 * 5 3 2 31 31 H 1.09006 * 109.47312 * 300.00122 * 5 3 2 32 32 H 1.08999 * 109.47600 * 59.99413 * 8 6 5 33 33 H 1.08999 * 109.47184 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47172 * 299.99690 * 8 6 5 35 35 H 1.09000 * 109.46797 * 65.00059 * 9 6 5 36 36 H 1.09000 * 109.46880 * 304.99851 * 9 6 5 37 37 H 1.09002 * 109.63012 * 111.45725 * 13 12 10 38 38 H 1.09000 * 109.63054 * 350.86988 * 13 12 10 39 39 H 1.08997 * 109.49554 * 186.21402 * 14 13 12 40 40 H 1.08997 * 109.49382 * 66.13002 * 14 13 12 41 41 H 1.08993 * 109.47768 * 290.00114 * 16 15 14 42 42 H 1.09004 * 109.47075 * 50.00431 * 16 15 14 43 43 H 0.97003 * 119.99498 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.49756 * 56.85119 * 25 15 14 45 45 H 1.08998 * 109.49494 * 176.90931 * 25 15 14 46 46 H 1.09001 * 109.62379 * 9.12792 * 26 12 10 47 47 H 1.08998 * 109.62760 * 248.54863 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 1 3.5383 3.2571 0.8425 8 6 3.5596 3.4048 -1.3066 9 6 5.5229 2.8236 0.1253 10 6 5.9401 4.2664 0.2496 11 8 5.1022 5.1431 0.2386 12 7 7.2446 4.5825 0.3718 13 6 8.2770 3.5350 0.3857 14 6 9.1757 3.7535 1.6075 15 7 9.6877 5.1304 1.5949 16 6 10.6877 5.3298 2.6524 17 6 11.3650 6.6620 2.4584 18 1 11.0814 7.2968 1.6319 19 6 12.3476 7.0700 3.3353 20 7 12.6940 6.2964 4.3409 21 14 13.1877 8.7210 3.0944 22 1 12.6213 9.3947 1.8985 23 1 12.9641 9.5696 4.2924 24 1 14.6450 8.5113 2.9014 25 6 8.5959 6.1060 1.7120 26 6 7.6735 5.9840 0.4939 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9565 0.7805 0.8892 32 1 2.4748 3.3467 -1.3958 33 1 3.8683 4.4502 -1.3059 34 1 4.0215 2.8898 -2.1489 35 1 5.9841 2.3870 -0.7606 36 1 5.8446 2.2748 1.0104 37 1 8.8743 3.5976 -0.5240 38 1 7.8038 2.5552 0.4498 39 1 10.0113 3.0545 1.5741 40 1 8.5988 3.5883 2.5175 41 1 10.1966 5.3102 3.6252 42 1 11.4309 4.5339 2.6044 43 1 13.3855 6.5833 4.9576 44 1 8.0270 5.9081 2.6205 45 1 9.0109 7.1130 1.7549 46 1 6.8012 6.6234 0.6294 47 1 8.2128 6.2815 -0.4054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602202270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:17 Heat of formation + Delta-G solvation = -144.244720 kcal Electronic energy + Delta-G solvation = -26237.841569 eV Core-core repulsion = 22419.699628 eV Total energy + Delta-G solvation = -3818.141941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65484 -41.14192 -39.12873 -37.79767 -36.24575 -35.91005 -34.38099 -32.30693 -30.65589 -29.98201 -28.64285 -27.80636 -27.04795 -24.66099 -23.91037 -23.04128 -21.90930 -20.87041 -19.74373 -18.62533 -18.44371 -18.26167 -17.61494 -17.40195 -16.76669 -16.66512 -16.58364 -15.95914 -15.65721 -15.42422 -15.28181 -14.84354 -14.78528 -14.41098 -14.18001 -14.06640 -13.75722 -13.46232 -13.20889 -13.07088 -12.92409 -12.83089 -12.73400 -12.57925 -12.41339 -12.32271 -12.14703 -12.09946 -11.98817 -11.78539 -11.70945 -11.65632 -11.33931 -11.26379 -10.66184 -10.60355 -9.69730 -9.03480 -8.21554 -6.30951 1.23057 1.40916 1.41981 1.55028 1.69053 1.75425 2.10024 2.40063 3.11079 3.25355 3.49194 3.71195 3.91637 3.98533 4.03225 4.08678 4.25345 4.29416 4.32381 4.32473 4.37632 4.46756 4.54729 4.59254 4.65414 4.71032 4.73047 4.75764 4.79804 4.88109 4.94352 4.96231 5.06118 5.11224 5.18598 5.25762 5.35394 5.46970 5.49226 5.58222 5.64299 6.03758 6.22502 6.51279 6.62076 6.78566 6.85024 7.23450 7.38831 8.89591 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.037333 B = 0.002209 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.824582 B =12674.535805 C =12996.356910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.456 3.544 4 O -0.540 6.540 5 C -0.103 4.103 6 C -0.061 4.061 7 H 0.053 0.947 8 C -0.155 4.155 9 C -0.128 4.128 10 C 0.507 3.493 11 O -0.585 6.585 12 N -0.614 5.614 13 C 0.120 3.880 14 C 0.033 3.967 15 N -0.540 5.540 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.277 1.277 25 C 0.058 3.942 26 C 0.126 3.874 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.020 0.980 41 H -0.042 1.042 42 H 0.013 0.987 43 H 0.264 0.736 44 H 0.008 0.992 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.277 -16.912 -11.480 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.430 6.430 5 C -0.140 4.140 6 C -0.080 4.080 7 H 0.071 0.929 8 C -0.212 4.212 9 C -0.167 4.167 10 C 0.297 3.703 11 O -0.465 6.465 12 N -0.347 5.347 13 C -0.002 4.002 14 C -0.096 4.096 15 N -0.264 5.264 16 C 0.082 3.918 17 C -0.561 4.561 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.203 1.203 25 C -0.071 4.071 26 C 0.003 3.997 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.038 0.962 41 H -0.025 1.025 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.602 -16.118 -11.799 27.295 hybrid contribution 0.005 1.268 1.403 1.891 sum -18.598 -14.850 -10.396 25.971 Atomic orbital electron populations 1.23484 0.75360 1.05514 1.02166 1.86506 1.24563 1.33137 1.83877 1.24432 0.93465 0.80875 0.71143 1.90677 1.68316 1.37482 1.46555 1.21581 0.85516 0.97999 1.08887 1.20602 0.94021 0.94112 0.99305 0.92865 1.21997 1.01313 1.01240 0.96680 1.21818 0.96071 0.91415 1.07375 1.21408 0.80967 0.93051 0.74836 1.90661 1.51321 1.52235 1.52296 1.48378 1.06622 1.07817 1.71893 1.22068 0.88607 0.91480 0.98046 1.22601 0.98660 0.90935 0.97417 1.62006 1.12745 1.03074 1.48614 1.19376 0.89440 0.96496 0.86494 1.21504 1.19646 1.03522 1.11443 0.91827 1.25889 0.97656 1.01324 0.94780 1.70081 1.31943 1.39014 1.16354 0.85357 0.78212 0.79016 0.78180 1.18747 1.20767 1.20291 1.22242 0.91390 0.97854 0.95639 1.21542 0.97169 0.83260 0.97744 0.92516 0.92274 0.85085 0.84126 0.84568 0.93263 0.93449 0.91192 0.84841 0.85727 0.89490 0.85125 0.89120 0.96153 1.02468 0.96878 0.92712 0.97412 0.90716 0.90145 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -5.48 10.57 -51.42 -0.54 -6.02 16 3 C 0.46 8.09 7.68 71.24 0.55 8.63 16 4 O -0.54 -13.99 13.72 22.00 0.30 -13.69 16 5 C -0.10 -1.08 5.29 29.85 0.16 -0.92 16 6 C -0.06 -1.08 1.68 -10.79 -0.02 -1.10 16 7 H 0.05 1.33 7.77 -2.39 -0.02 1.31 16 8 C -0.16 -3.34 8.67 71.98 0.62 -2.72 16 9 C -0.13 -1.81 3.54 29.85 0.11 -1.71 16 10 C 0.51 13.07 7.42 87.66 0.65 13.72 16 11 O -0.58 -20.29 13.42 -3.02 -0.04 -20.33 16 12 N -0.61 -16.30 3.01 -817.85 -2.46 -18.77 16 13 C 0.12 2.51 6.50 86.35 0.56 3.07 16 14 C 0.03 1.00 5.62 86.38 0.49 1.48 16 15 N -0.54 -22.00 4.62 -899.75 -4.16 -26.16 16 16 C 0.21 10.76 4.72 85.56 0.40 11.16 16 17 C -0.52 -29.06 8.41 25.60 0.22 -28.84 16 18 H 0.06 3.47 7.13 -2.91 -0.02 3.45 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 21 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 C 0.06 2.26 5.46 86.40 0.47 2.73 16 26 C 0.13 4.05 6.60 86.36 0.57 4.62 16 27 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 28 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.05 1.22 5.96 -2.39 -0.01 1.21 16 33 H 0.05 1.32 5.95 -2.39 -0.01 1.31 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.13 1.00 8.00 -2.39 -0.02 0.98 16 36 H 0.12 1.13 7.66 -2.39 -0.02 1.11 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 1.48 6.02 -2.39 -0.01 1.46 16 39 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 42 H 0.01 0.72 7.97 -2.39 -0.02 0.70 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.07 3.19 6.67 -2.39 -0.02 3.17 16 46 H 0.08 2.70 7.06 -2.39 -0.02 2.68 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -78.17 373.10 2.79 -75.38 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.95 Total: 6.59 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.43 Total: 12.18 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -6.33 Total: -100.07 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.28 Total: -40.03 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -78.17 2.79 -75.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.863 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds