Wall clock time and date at job start Fri Apr 10 2020 18:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34227 * 117.00219 * 2 1 4 4 O 1.20826 * 120.00011 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99980 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46949 * 179.97438 * 5 3 2 7 7 C 1.34782 * 120.00090 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99989 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 5 10 10 H 1.09007 * 110.33378 * 57.74564 * 9 7 6 11 11 C 1.55380 * 110.34912 * 295.41433 * 9 7 6 12 12 C 1.55142 * 101.43737 * 204.11227 * 11 9 7 13 13 C 1.54312 * 103.17714 * 35.64527 * 12 11 9 14 14 N 1.47443 * 107.23612 * 337.62814 * 13 12 11 15 15 C 1.46900 * 111.00227 * 236.74273 * 14 13 12 16 16 C 1.52992 * 109.47131 * 290.12352 * 15 14 13 17 17 H 1.09002 * 109.47343 * 54.99588 * 16 15 14 18 18 C 1.53004 * 109.47164 * 294.99750 * 16 15 14 19 19 C 1.53008 * 109.47368 * 174.99767 * 16 15 14 20 20 C 1.50697 * 109.47163 * 184.99654 * 19 16 15 21 21 H 1.07996 * 120.00012 * 0.02562 * 20 19 16 22 22 C 1.37872 * 119.99890 * 179.97438 * 20 19 16 23 23 N 1.31510 * 120.00443 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00147 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 89.99578 * 24 22 20 26 26 H 1.48497 * 109.47194 * 210.00079 * 24 22 20 27 27 H 1.48502 * 109.46544 * 329.99630 * 24 22 20 28 28 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47319 * 299.99900 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99497 * 1 2 3 31 31 H 1.08995 * 109.47563 * 60.00494 * 5 3 2 32 32 H 1.09000 * 109.47168 * 299.99664 * 5 3 2 33 33 H 0.97003 * 120.00031 * 0.02562 * 6 5 3 34 34 H 1.09003 * 111.17446 * 86.06057 * 11 9 7 35 35 H 1.08996 * 111.00619 * 322.09728 * 11 9 7 36 36 H 1.09002 * 110.70816 * 277.17375 * 12 11 9 37 37 H 1.09005 * 110.70106 * 154.11515 * 12 11 9 38 38 H 1.08997 * 109.89327 * 97.03090 * 13 12 11 39 39 H 1.09001 * 109.89155 * 218.05905 * 13 12 11 40 40 H 1.08998 * 109.46669 * 50.12444 * 15 14 13 41 41 H 1.08999 * 109.47032 * 170.11876 * 15 14 13 42 42 H 1.09002 * 109.46859 * 300.00135 * 18 16 15 43 43 H 1.08997 * 109.46889 * 59.99925 * 18 16 15 44 44 H 1.09000 * 109.47030 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.47070 * 305.00124 * 19 16 15 46 46 H 1.09000 * 109.46672 * 65.00124 * 19 16 15 47 47 H 0.96999 * 120.00389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 5.2921 2.9950 -0.0011 8 8 6.1274 2.1157 -0.0012 9 6 5.7194 4.4401 -0.0011 10 1 5.3038 4.9580 0.8634 11 6 5.2730 5.1356 -1.3168 12 6 6.2904 6.3034 -1.4080 13 6 7.5868 5.6853 -0.8437 14 7 7.1944 4.5407 -0.0012 15 6 7.7119 4.6911 1.3654 16 6 9.2327 4.5242 1.3561 17 1 9.6708 5.2254 0.6458 18 6 9.5863 3.0936 0.9445 19 6 9.7851 4.8037 2.7554 20 6 11.2910 4.7599 2.7189 21 1 11.8029 4.5538 1.7906 22 6 12.0152 4.9839 3.8705 23 7 13.3294 4.9463 3.8387 24 14 11.1298 5.3411 5.4761 25 1 10.8627 4.0657 6.1884 26 1 11.9786 6.2144 6.3259 27 1 9.8441 6.0271 5.1903 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7805 0.8892 33 1 3.3136 3.3830 -0.0006 34 1 4.2531 5.5117 -1.2369 35 1 5.3738 4.4625 -2.1682 36 1 5.9666 7.1453 -0.7960 37 1 6.4300 6.6128 -2.4439 38 1 8.2212 5.3434 -1.6614 39 1 8.1198 6.4240 -0.2451 40 1 7.4573 5.6812 1.7434 41 1 7.2669 3.9314 2.0081 42 1 9.1482 2.3925 1.6548 43 1 9.1928 2.8946 -0.0522 44 1 10.6698 2.9749 0.9375 45 1 9.4581 5.7899 3.0848 46 1 9.4164 4.0481 3.4490 47 1 13.8389 5.1035 4.6490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602695791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:29 Heat of formation + Delta-G solvation = -120.072444 kcal Electronic energy + Delta-G solvation = -26407.014377 eV Core-core repulsion = 22589.920625 eV Total energy + Delta-G solvation = -3817.093753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12522 -40.14391 -38.26231 -37.09312 -35.33469 -34.69296 -32.41483 -30.77140 -30.46431 -28.92605 -27.28002 -27.02593 -25.39416 -23.04695 -22.20350 -21.54313 -21.01913 -20.19523 -18.64390 -18.21757 -17.71377 -17.20248 -16.92440 -16.59182 -16.02186 -15.68037 -15.31974 -14.85559 -14.26457 -14.13046 -13.92484 -13.77325 -13.67245 -13.38865 -13.06133 -12.82506 -12.70313 -12.56003 -12.31339 -12.16538 -11.67081 -11.49243 -11.38092 -11.36143 -11.19782 -11.12263 -10.86859 -10.77598 -10.58642 -10.36499 -9.82852 -9.66835 -9.64274 -9.42444 -9.29811 -8.97761 -8.45510 -8.08609 -5.95731 -3.91918 1.59575 1.92584 2.58917 2.96090 3.35745 3.42524 3.46077 4.04665 4.18096 4.41214 4.49795 4.52169 4.60231 4.67740 4.81907 4.85708 4.87671 5.02580 5.04238 5.13862 5.36142 5.37791 5.54032 5.58133 5.64027 5.73612 5.74486 5.89493 5.96064 6.03158 6.12939 6.18906 6.40449 6.52335 6.74403 6.96910 7.04223 7.10638 7.18535 7.29249 7.30953 7.35888 7.45174 7.59227 7.89789 8.15044 8.65051 9.10933 9.67391 11.17799 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002788 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.442159 B =10040.688343 C =10936.199687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.461 3.539 4 O -0.505 6.505 5 C 0.129 3.871 6 N -0.734 5.734 7 C 0.525 3.475 8 O -0.499 6.499 9 C 0.055 3.945 10 H 0.080 0.920 11 C -0.117 4.117 12 C -0.141 4.141 13 C 0.043 3.957 14 N -0.501 5.501 15 C 0.057 3.943 16 C -0.068 4.068 17 H 0.061 0.939 18 C -0.120 4.120 19 C -0.010 4.010 20 C -0.508 4.508 21 H 0.074 0.926 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.878 3.122 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.267 1.267 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.011 0.989 46 H 0.010 0.990 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.465 -4.365 -11.059 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.303 3.697 4 O -0.393 6.393 5 C 0.004 3.996 6 N -0.393 5.393 7 C 0.310 3.690 8 O -0.371 6.371 9 C -0.057 4.057 10 H 0.097 0.903 11 C -0.155 4.155 12 C -0.179 4.179 13 C -0.084 4.084 14 N -0.225 5.225 15 C -0.070 4.070 16 C -0.087 4.087 17 H 0.079 0.921 18 C -0.177 4.177 19 C -0.048 4.048 20 C -0.546 4.546 21 H 0.092 0.908 22 C -0.137 4.137 23 N -0.546 5.546 24 Si 0.706 3.294 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.246 0.754 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.677 -5.176 -11.135 29.368 hybrid contribution -1.307 1.250 1.428 2.304 sum -27.984 -3.926 -9.707 29.879 Atomic orbital electron populations 1.23343 0.75512 1.04118 1.02798 1.86494 1.24004 1.32603 1.83803 1.23658 0.92016 0.81761 0.72230 1.90673 1.66897 1.36300 1.45441 1.20578 0.86420 0.86024 1.06554 1.45827 1.08453 1.06661 1.78406 1.20571 0.80902 0.91696 0.75814 1.90759 1.50904 1.49400 1.46020 1.22509 0.91729 0.91959 0.99543 0.90274 1.22748 0.99225 0.97346 0.96189 1.22804 0.95526 0.97499 1.02073 1.22867 0.96590 0.91388 0.97564 1.63109 1.05606 1.41231 1.12584 1.22538 0.98241 0.98912 0.87350 1.20981 0.90515 0.98007 0.99170 0.92092 1.21540 1.01021 0.95300 0.99884 1.19631 0.97197 0.95650 0.92287 1.21132 0.89264 1.47413 0.96837 0.90780 1.25029 0.94696 0.95094 0.98854 1.69915 1.05317 1.50888 1.28444 0.86809 0.80008 0.78548 0.84070 1.20398 1.21569 1.19194 0.87689 0.91621 0.91635 0.86930 0.86907 0.75444 0.90304 0.90184 0.91257 0.90447 0.90208 0.91646 0.95192 0.91493 0.94365 0.93328 0.92623 0.97105 0.97135 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.64 10.56 -39.25 -0.41 -3.05 16 3 C 0.46 3.86 8.03 36.01 0.29 4.15 16 4 O -0.51 -5.22 15.42 -18.75 -0.29 -5.51 16 5 C 0.13 1.07 6.27 -5.19 -0.03 1.04 16 6 N -0.73 -7.00 5.51 -61.47 -0.34 -7.34 16 7 C 0.52 6.69 7.19 -10.98 -0.08 6.61 16 8 O -0.50 -8.43 16.49 5.56 0.09 -8.34 16 9 C 0.05 0.65 2.81 -67.08 -0.19 0.46 16 10 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 11 C -0.12 -1.06 6.51 -24.33 -0.16 -1.21 16 12 C -0.14 -1.32 6.93 -24.91 -0.17 -1.50 16 13 C 0.04 0.56 6.13 -2.84 -0.02 0.54 16 14 N -0.50 -7.48 3.79 -224.46 -0.85 -8.33 16 15 C 0.06 0.98 3.93 -3.83 -0.02 0.97 16 16 C -0.07 -1.41 2.31 -90.62 -0.21 -1.62 16 17 H 0.06 1.28 7.05 -51.93 -0.37 0.92 16 18 C -0.12 -2.54 8.89 37.16 0.33 -2.21 16 19 C -0.01 -0.24 3.52 -27.88 -0.10 -0.34 16 20 C -0.51 -14.71 8.96 -34.44 -0.31 -15.02 16 21 H 0.07 2.30 7.30 -52.49 -0.38 1.92 16 22 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 23 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 24 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.32 8.13 -51.92 -0.42 -0.10 16 30 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.41 3.39 7.44 -40.82 -0.30 3.08 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 40 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 41 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.98 7.75 -51.93 -0.40 0.57 16 44 H 0.05 1.27 6.95 -51.93 -0.36 0.91 16 45 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -35.19 381.25 -7.64 -42.83 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.99 Total: -0.82 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 0.31 Total: -5.10 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.42 Total: -43.36 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.61 Total: -16.89 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.19 -7.64 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.242 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds