Wall clock time and date at job start Fri Apr 10 2020 18:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34227 * 117.00219 * 2 1 4 4 O 1.20826 * 120.00011 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99980 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46949 * 179.97438 * 5 3 2 7 7 C 1.34782 * 120.00090 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99989 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 5 10 10 H 1.09007 * 110.33378 * 57.74564 * 9 7 6 11 11 C 1.55380 * 110.34912 * 295.41433 * 9 7 6 12 12 C 1.55142 * 101.43737 * 204.11227 * 11 9 7 13 13 C 1.54312 * 103.17714 * 35.64527 * 12 11 9 14 14 N 1.47443 * 107.23612 * 337.62814 * 13 12 11 15 15 C 1.46900 * 111.00227 * 236.74273 * 14 13 12 16 16 C 1.52992 * 109.47131 * 290.12352 * 15 14 13 17 17 H 1.09002 * 109.47343 * 54.99588 * 16 15 14 18 18 C 1.53004 * 109.47164 * 294.99750 * 16 15 14 19 19 C 1.53008 * 109.47368 * 174.99767 * 16 15 14 20 20 C 1.50697 * 109.47163 * 184.99654 * 19 16 15 21 21 H 1.07996 * 120.00012 * 0.02562 * 20 19 16 22 22 C 1.37872 * 119.99890 * 179.97438 * 20 19 16 23 23 N 1.31510 * 120.00443 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00147 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 89.99578 * 24 22 20 26 26 H 1.48497 * 109.47194 * 210.00079 * 24 22 20 27 27 H 1.48502 * 109.46544 * 329.99630 * 24 22 20 28 28 H 1.08999 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47319 * 299.99900 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99497 * 1 2 3 31 31 H 1.08995 * 109.47563 * 60.00494 * 5 3 2 32 32 H 1.09000 * 109.47168 * 299.99664 * 5 3 2 33 33 H 0.97003 * 120.00031 * 0.02562 * 6 5 3 34 34 H 1.09003 * 111.17446 * 86.06057 * 11 9 7 35 35 H 1.08996 * 111.00619 * 322.09728 * 11 9 7 36 36 H 1.09002 * 110.70816 * 277.17375 * 12 11 9 37 37 H 1.09005 * 110.70106 * 154.11515 * 12 11 9 38 38 H 1.08997 * 109.89327 * 97.03090 * 13 12 11 39 39 H 1.09001 * 109.89155 * 218.05905 * 13 12 11 40 40 H 1.08998 * 109.46669 * 50.12444 * 15 14 13 41 41 H 1.08999 * 109.47032 * 170.11876 * 15 14 13 42 42 H 1.09002 * 109.46859 * 300.00135 * 18 16 15 43 43 H 1.08997 * 109.46889 * 59.99925 * 18 16 15 44 44 H 1.09000 * 109.47030 * 179.97438 * 18 16 15 45 45 H 1.09001 * 109.47070 * 305.00124 * 19 16 15 46 46 H 1.09000 * 109.46672 * 65.00124 * 19 16 15 47 47 H 0.96999 * 120.00389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 5.2921 2.9950 -0.0011 8 8 6.1274 2.1157 -0.0012 9 6 5.7194 4.4401 -0.0011 10 1 5.3038 4.9580 0.8634 11 6 5.2730 5.1356 -1.3168 12 6 6.2904 6.3034 -1.4080 13 6 7.5868 5.6853 -0.8437 14 7 7.1944 4.5407 -0.0012 15 6 7.7119 4.6911 1.3654 16 6 9.2327 4.5242 1.3561 17 1 9.6708 5.2254 0.6458 18 6 9.5863 3.0936 0.9445 19 6 9.7851 4.8037 2.7554 20 6 11.2910 4.7599 2.7189 21 1 11.8029 4.5538 1.7906 22 6 12.0152 4.9839 3.8705 23 7 13.3294 4.9463 3.8387 24 14 11.1298 5.3411 5.4761 25 1 10.8627 4.0657 6.1884 26 1 11.9786 6.2144 6.3259 27 1 9.8441 6.0271 5.1903 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7805 0.8892 33 1 3.3136 3.3830 -0.0006 34 1 4.2531 5.5117 -1.2369 35 1 5.3738 4.4625 -2.1682 36 1 5.9666 7.1453 -0.7960 37 1 6.4300 6.6128 -2.4439 38 1 8.2212 5.3434 -1.6614 39 1 8.1198 6.4240 -0.2451 40 1 7.4573 5.6812 1.7434 41 1 7.2669 3.9314 2.0081 42 1 9.1482 2.3925 1.6548 43 1 9.1928 2.8946 -0.0522 44 1 10.6698 2.9749 0.9375 45 1 9.4581 5.7899 3.0848 46 1 9.4164 4.0481 3.4490 47 1 13.8389 5.1035 4.6490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602695791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:28 Heat of formation + Delta-G solvation = -144.936773 kcal Electronic energy + Delta-G solvation = -26408.092575 eV Core-core repulsion = 22589.920625 eV Total energy + Delta-G solvation = -3818.171951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.81475 -41.07533 -39.30483 -37.75621 -36.94562 -35.58432 -34.45864 -32.12730 -31.28680 -29.62505 -29.22560 -27.60759 -26.87141 -24.53648 -23.39971 -22.32709 -22.02099 -21.13215 -20.25217 -19.01979 -18.91408 -18.39244 -17.82358 -17.64604 -17.01204 -16.59595 -16.25767 -16.12713 -15.68870 -15.47581 -15.22034 -14.80263 -14.65580 -14.39462 -14.17809 -14.14614 -13.80648 -13.60981 -13.48948 -13.30884 -12.98564 -12.83469 -12.68268 -12.60296 -12.37244 -12.17295 -12.04204 -11.88119 -11.79585 -11.70827 -11.60642 -11.40219 -11.15725 -11.05665 -10.82082 -10.73222 -10.27043 -9.19080 -8.25103 -6.27364 0.95171 1.29832 1.35835 1.37177 1.49110 1.63933 2.20041 2.38169 3.05670 3.09653 3.52138 3.60992 3.66063 3.99566 4.06412 4.13835 4.19779 4.25963 4.27347 4.30710 4.34022 4.36546 4.49290 4.59731 4.71427 4.72145 4.81243 4.90609 4.95371 4.97737 5.02091 5.08576 5.12081 5.14389 5.27213 5.34236 5.39997 5.43218 5.53995 5.68709 5.73465 6.01169 6.11857 6.36547 6.44923 6.53076 6.79722 7.24260 7.35646 8.91749 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002788 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.442159 B =10040.688343 C =10936.199687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.526 6.526 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.526 3.474 8 O -0.549 6.549 9 C 0.051 3.949 10 H 0.096 0.904 11 C -0.106 4.106 12 C -0.130 4.130 13 C 0.038 3.962 14 N -0.522 5.522 15 C 0.072 3.928 16 C -0.063 4.063 17 H 0.052 0.948 18 C -0.106 4.106 19 C -0.005 4.005 20 C -0.517 4.517 21 H 0.033 0.967 22 C 0.000 4.000 23 N -0.954 5.954 24 Si 0.949 3.051 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.245 1.245 28 H 0.131 0.869 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.019 0.981 46 H 0.012 0.988 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.039 -3.609 -10.801 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.415 6.415 5 C 0.002 3.998 6 N -0.378 5.378 7 C 0.313 3.687 8 O -0.424 6.424 9 C -0.061 4.061 10 H 0.114 0.886 11 C -0.145 4.145 12 C -0.168 4.168 13 C -0.090 4.090 14 N -0.246 5.246 15 C -0.056 4.056 16 C -0.082 4.082 17 H 0.071 0.929 18 C -0.164 4.164 19 C -0.043 4.043 20 C -0.555 4.555 21 H 0.051 0.949 22 C -0.196 4.196 23 N -0.595 5.595 24 Si 0.773 3.227 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.169 1.169 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.256 0.744 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.038 0.962 46 H 0.030 0.970 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.313 -4.418 -10.900 32.515 hybrid contribution -0.187 0.931 1.243 1.564 sum -30.500 -3.487 -9.657 32.182 Atomic orbital electron populations 1.23622 0.73947 1.05966 1.02886 1.86486 1.25539 1.31957 1.83383 1.23538 0.91810 0.81759 0.71603 1.90664 1.67304 1.36943 1.46620 1.20657 0.86652 0.85318 1.07123 1.45665 1.07654 1.07596 1.76861 1.20763 0.81282 0.91704 0.74994 1.90743 1.52318 1.50662 1.48711 1.22648 0.89775 0.91833 1.01857 0.88605 1.22768 1.00748 0.96676 0.94260 1.22765 0.93358 0.97690 1.03033 1.22892 0.98444 0.90731 0.96886 1.62938 1.08034 1.42480 1.11142 1.22203 0.95083 0.99299 0.89035 1.20844 0.93500 0.97108 0.96719 0.92933 1.21380 0.98849 0.95850 1.00272 1.19563 0.94127 0.95993 0.94625 1.21417 0.91802 1.46841 0.95415 0.94888 1.26015 0.95456 0.94950 1.03191 1.70074 1.07263 1.52387 1.29780 0.85676 0.79473 0.78856 0.78735 1.19575 1.20973 1.16871 0.85060 0.91662 0.91440 0.86161 0.86635 0.74413 0.87070 0.90634 0.89916 0.88839 0.91275 0.92802 0.93972 0.92111 0.94750 0.92496 0.95578 0.96223 0.96963 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.73 10.56 -51.39 -0.54 -5.28 16 3 C 0.47 7.09 8.03 71.24 0.57 7.66 16 4 O -0.53 -9.90 15.42 21.96 0.34 -9.56 16 5 C 0.13 1.92 6.27 85.63 0.54 2.46 16 6 N -0.72 -12.31 5.51 -466.78 -2.57 -14.88 16 7 C 0.53 12.61 7.19 87.66 0.63 13.24 16 8 O -0.55 -18.30 16.49 -3.03 -0.05 -18.35 16 9 C 0.05 1.08 2.81 44.81 0.13 1.21 16 10 H 0.10 1.76 7.81 -2.38 -0.02 1.74 16 11 C -0.11 -1.56 6.51 32.15 0.21 -1.36 16 12 C -0.13 -2.05 6.93 31.77 0.22 -1.83 16 13 C 0.04 0.93 6.13 86.64 0.53 1.46 16 14 N -0.52 -14.94 3.79 -864.05 -3.27 -18.21 16 15 C 0.07 2.39 3.93 86.30 0.34 2.73 16 16 C -0.06 -2.63 2.31 -10.79 -0.02 -2.65 16 17 H 0.05 2.27 7.05 -2.39 -0.02 2.25 16 18 C -0.11 -4.63 8.89 71.98 0.64 -3.99 16 19 C -0.01 -0.25 3.52 29.85 0.10 -0.15 16 20 C -0.52 -30.78 8.96 25.60 0.23 -30.55 16 21 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 22 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 23 N -0.95 -61.60 13.96 21.44 0.30 -61.30 16 24 Si 0.95 45.66 27.47 68.60 1.88 47.55 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 28 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.52 8.13 -2.38 -0.02 0.50 16 30 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 31 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.42 5.82 7.44 -92.71 -0.69 5.13 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.21 8.06 -2.39 -0.02 1.20 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.43 6.95 -2.39 -0.02 1.42 16 40 H 0.04 1.29 7.96 -2.39 -0.02 1.28 16 41 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 42 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 2.35 7.75 -2.39 -0.02 2.33 16 44 H 0.03 1.24 6.95 -2.39 -0.02 1.23 16 45 H 0.02 0.92 7.20 -2.39 -0.02 0.91 16 46 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 47 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -78.20 381.25 2.06 -76.14 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.21 Total: 13.80 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.77 Total: -9.90 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -5.55 Total: -94.40 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.25 Total: -33.18 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.88 Total: 47.55 kcal Total: -78.20 2.06 -76.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.798 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds