Wall clock time and date at job start Fri Apr 10 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99566 * 2 1 4 4 O 1.20821 * 120.00679 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99343 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47027 * 180.02562 * 5 3 2 7 7 C 1.34774 * 120.00206 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99881 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00044 * 179.97438 * 7 6 5 10 10 H 1.09001 * 110.32775 * 299.20147 * 9 7 6 11 11 C 1.54902 * 110.37116 * 61.45204 * 9 7 6 12 12 C 1.55148 * 101.68596 * 155.88032 * 11 9 7 13 13 C 1.54367 * 102.99489 * 324.39645 * 12 11 9 14 14 N 1.47435 * 107.25303 * 22.22784 * 13 12 11 15 15 C 1.46905 * 111.00016 * 123.29130 * 14 13 12 16 16 C 1.52996 * 109.46784 * 55.70076 * 15 14 13 17 17 H 1.08991 * 109.47482 * 304.01533 * 16 15 14 18 18 C 1.52993 * 109.47289 * 64.02426 * 16 15 14 19 19 C 1.53006 * 109.46669 * 184.02173 * 16 15 14 20 20 C 1.50703 * 109.47204 * 175.00455 * 19 16 15 21 21 H 1.08004 * 119.99306 * 359.97438 * 20 19 16 22 22 C 1.37871 * 120.00032 * 179.97438 * 20 19 16 23 23 N 1.31514 * 120.00318 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47471 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47129 * 120.00109 * 24 22 20 27 27 H 1.48496 * 109.47429 * 239.99669 * 24 22 20 28 28 H 1.09007 * 109.47013 * 60.00713 * 1 2 3 29 29 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47441 * 300.00343 * 1 2 3 31 31 H 1.08994 * 109.47397 * 59.99698 * 5 3 2 32 32 H 1.09004 * 109.46960 * 299.99285 * 5 3 2 33 33 H 0.97003 * 119.99938 * 359.97438 * 6 5 3 34 34 H 1.09004 * 110.99334 * 273.98714 * 11 9 7 35 35 H 1.08997 * 110.99350 * 37.77035 * 11 9 7 36 36 H 1.09001 * 110.70178 * 82.74745 * 12 11 9 37 37 H 1.08998 * 110.70639 * 205.98196 * 12 11 9 38 38 H 1.09003 * 109.85024 * 262.83366 * 13 12 11 39 39 H 1.08997 * 110.03971 * 141.73586 * 13 12 11 40 40 H 1.09003 * 109.47024 * 175.70458 * 15 14 13 41 41 H 1.09001 * 109.47078 * 295.70027 * 15 14 13 42 42 H 1.09001 * 109.47535 * 59.99091 * 18 16 15 43 43 H 1.09000 * 109.47046 * 179.97438 * 18 16 15 44 44 H 1.09003 * 109.46792 * 299.99386 * 18 16 15 45 45 H 1.09001 * 109.46851 * 294.99950 * 19 16 15 46 46 H 1.08997 * 109.47179 * 54.99939 * 19 16 15 47 47 H 0.96999 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 5.2920 2.9950 0.0003 8 8 6.1273 2.1157 0.0003 9 6 5.7193 4.4402 0.0005 10 1 5.3486 4.9448 -0.8917 11 6 5.2066 5.1540 1.2761 12 6 6.2153 6.3253 1.4078 13 6 7.5399 5.6991 0.9217 14 7 7.1923 4.5414 0.0774 15 6 7.7818 4.6708 -1.2620 16 6 9.2949 4.8592 -1.1371 17 1 9.5028 5.7194 -0.5010 18 6 9.9156 3.6052 -0.5181 19 6 9.8958 5.0940 -2.5245 20 6 11.3651 5.4010 -2.3903 21 1 11.8242 5.4265 -1.4131 22 6 12.1230 5.6493 -3.5149 23 7 11.5639 5.6177 -4.7049 24 14 13.9440 6.0306 -3.3484 25 1 14.3261 6.0049 -1.9136 26 1 14.7326 5.0127 -4.0884 27 1 14.2215 7.3765 -3.9110 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9557 0.7809 -0.8907 32 1 3.9563 0.7806 0.8893 33 1 3.3136 3.3830 0.0005 34 1 4.1921 5.5265 1.1341 35 1 5.2602 4.4934 2.1414 36 1 5.9249 7.1579 0.7669 37 1 6.2986 6.6474 2.4458 38 1 8.1298 5.3702 1.7773 39 1 8.1053 6.4264 0.3392 40 1 7.5741 3.7696 -1.8389 41 1 7.3487 5.5338 -1.7677 42 1 9.7078 2.7449 -1.1543 43 1 10.9937 3.7393 -0.4296 44 1 9.4876 3.4380 0.4703 45 1 9.7658 4.1989 -3.1329 46 1 9.3911 5.9340 -3.0016 47 1 12.0973 5.7920 -5.4961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602695792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:33 Heat of formation + Delta-G solvation = -122.248773 kcal Electronic energy + Delta-G solvation = -26305.335064 eV Core-core repulsion = 22488.146938 eV Total energy + Delta-G solvation = -3817.188125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.09733 -40.11378 -38.25293 -37.06776 -35.21709 -34.66168 -32.46434 -30.57495 -30.41577 -28.87652 -27.00521 -26.69487 -25.38617 -23.17896 -22.32610 -21.52513 -21.10725 -20.19228 -18.43745 -18.20391 -17.68752 -17.17543 -16.82635 -16.37882 -15.86528 -15.64018 -15.24412 -14.76297 -14.41869 -14.12826 -14.07884 -13.70992 -13.51667 -13.34548 -12.84451 -12.74900 -12.57645 -12.53583 -12.36930 -11.91333 -11.62651 -11.33687 -11.30617 -11.25056 -11.10374 -11.09198 -10.81696 -10.70642 -10.64667 -10.21234 -10.14809 -9.77054 -9.56066 -9.39107 -9.06666 -8.88008 -8.28453 -8.00052 -5.93230 -3.93854 1.62425 1.95520 2.63347 3.00306 3.35140 3.42632 3.47032 4.10946 4.22645 4.46879 4.52411 4.56895 4.62511 4.70132 4.88991 4.89320 4.92367 5.04841 5.10121 5.21151 5.42664 5.43515 5.61867 5.68549 5.72394 5.77084 5.80792 5.96159 6.04040 6.06837 6.23298 6.25509 6.53018 6.63009 6.78532 7.07672 7.12650 7.14427 7.25236 7.31994 7.40111 7.47569 7.74840 7.91604 8.07606 8.18722 8.51859 9.12723 9.69230 11.18414 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002499 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.165819 B =11203.916143 C =11922.960093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.461 3.539 4 O -0.505 6.505 5 C 0.129 3.871 6 N -0.733 5.733 7 C 0.527 3.473 8 O -0.503 6.503 9 C 0.055 3.945 10 H 0.081 0.919 11 C -0.118 4.118 12 C -0.141 4.141 13 C 0.040 3.960 14 N -0.502 5.502 15 C 0.058 3.942 16 C -0.082 4.082 17 H 0.057 0.943 18 C -0.120 4.120 19 C 0.027 3.973 20 C -0.509 4.509 21 H 0.057 0.943 22 C 0.054 3.946 23 N -0.897 5.897 24 Si 0.889 3.111 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.286 1.286 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.028 0.972 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.016 0.984 46 H 0.011 0.989 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 -6.291 12.531 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.303 3.697 4 O -0.393 6.393 5 C 0.004 3.996 6 N -0.393 5.393 7 C 0.312 3.688 8 O -0.375 6.375 9 C -0.058 4.058 10 H 0.099 0.901 11 C -0.156 4.156 12 C -0.179 4.179 13 C -0.087 4.087 14 N -0.226 5.226 15 C -0.069 4.069 16 C -0.101 4.101 17 H 0.075 0.925 18 C -0.178 4.178 19 C -0.010 4.010 20 C -0.547 4.547 21 H 0.075 0.925 22 C -0.147 4.147 23 N -0.537 5.537 24 Si 0.718 3.282 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.212 1.212 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.636 -7.101 12.557 26.842 hybrid contribution 0.051 1.261 -0.573 1.386 sum -22.585 -5.840 11.984 26.226 Atomic orbital electron populations 1.23343 0.75527 1.04103 1.02806 1.86495 1.23997 1.32615 1.83827 1.23659 0.92015 0.81757 0.72242 1.90673 1.66889 1.36291 1.45402 1.20579 0.86416 0.86065 1.06527 1.45829 1.08469 1.06649 1.78377 1.20587 0.80865 0.91707 0.75623 1.90746 1.50972 1.49485 1.46256 1.22445 0.91760 0.91824 0.99736 0.90095 1.22680 0.99052 0.97275 0.96618 1.22817 0.95474 0.97484 1.02122 1.22907 0.96479 0.91554 0.97762 1.63175 1.04686 1.40467 1.14284 1.22507 0.96990 0.99891 0.87485 1.21297 0.90649 0.97803 1.00358 0.92453 1.21554 1.00086 0.97011 0.99125 1.19130 0.95251 0.96718 0.89950 1.21271 0.94177 1.46617 0.92662 0.92508 1.25026 0.98346 0.95826 0.95468 1.69980 1.35763 1.50362 0.97628 0.86576 0.85770 0.77787 0.78112 1.19749 1.21113 1.21188 0.91607 0.87703 0.91642 0.86903 0.86968 0.75411 0.90379 0.90293 0.91195 0.90526 0.90435 0.91185 0.91043 0.95372 0.94036 0.92984 0.93874 0.96532 0.97025 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.70 10.57 -39.26 -0.41 -3.12 16 3 C 0.46 3.97 8.03 36.01 0.29 4.26 16 4 O -0.50 -5.35 15.42 -18.75 -0.29 -5.64 16 5 C 0.13 1.11 6.27 -5.19 -0.03 1.07 16 6 N -0.73 -7.32 5.47 -61.47 -0.34 -7.66 16 7 C 0.53 7.00 7.21 -10.98 -0.08 6.92 16 8 O -0.50 -8.75 16.49 5.56 0.09 -8.66 16 9 C 0.05 0.69 2.84 -67.34 -0.19 0.49 16 10 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 11 C -0.12 -1.13 6.42 -24.59 -0.16 -1.29 16 12 C -0.14 -1.42 6.95 -24.88 -0.17 -1.59 16 13 C 0.04 0.55 6.09 -2.81 -0.02 0.53 16 14 N -0.50 -7.84 3.86 -224.72 -0.87 -8.71 16 15 C 0.06 1.07 4.20 -3.82 -0.02 1.05 16 16 C -0.08 -1.75 2.09 -90.62 -0.19 -1.94 16 17 H 0.06 1.20 6.13 -51.93 -0.32 0.88 16 18 C -0.12 -2.53 8.88 37.15 0.33 -2.20 16 19 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 20 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 21 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 24 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H 0.07 0.33 8.13 -51.92 -0.42 -0.09 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 3.57 7.42 -40.82 -0.30 3.27 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.04 6.06 -51.93 -0.31 0.72 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.03 0.50 8.01 -51.93 -0.42 0.09 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 44 H 0.04 0.84 7.72 -51.93 -0.40 0.44 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -34.61 383.03 -7.94 -42.55 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.93 Total: -0.75 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.32 Total: -4.17 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.47 Total: -43.01 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.61 Total: -17.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.61 -7.94 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.700 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds