Wall clock time and date at job start Fri Apr 10 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99566 * 2 1 4 4 O 1.20821 * 120.00679 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99343 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47027 * 180.02562 * 5 3 2 7 7 C 1.34774 * 120.00206 * 179.97438 * 6 5 3 8 8 O 1.21282 * 119.99881 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00044 * 179.97438 * 7 6 5 10 10 H 1.09001 * 110.32775 * 299.20147 * 9 7 6 11 11 C 1.54902 * 110.37116 * 61.45204 * 9 7 6 12 12 C 1.55148 * 101.68596 * 155.88032 * 11 9 7 13 13 C 1.54367 * 102.99489 * 324.39645 * 12 11 9 14 14 N 1.47435 * 107.25303 * 22.22784 * 13 12 11 15 15 C 1.46905 * 111.00016 * 123.29130 * 14 13 12 16 16 C 1.52996 * 109.46784 * 55.70076 * 15 14 13 17 17 H 1.08991 * 109.47482 * 304.01533 * 16 15 14 18 18 C 1.52993 * 109.47289 * 64.02426 * 16 15 14 19 19 C 1.53006 * 109.46669 * 184.02173 * 16 15 14 20 20 C 1.50703 * 109.47204 * 175.00455 * 19 16 15 21 21 H 1.08004 * 119.99306 * 359.97438 * 20 19 16 22 22 C 1.37871 * 120.00032 * 179.97438 * 20 19 16 23 23 N 1.31514 * 120.00318 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99748 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47471 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47129 * 120.00109 * 24 22 20 27 27 H 1.48496 * 109.47429 * 239.99669 * 24 22 20 28 28 H 1.09007 * 109.47013 * 60.00713 * 1 2 3 29 29 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47441 * 300.00343 * 1 2 3 31 31 H 1.08994 * 109.47397 * 59.99698 * 5 3 2 32 32 H 1.09004 * 109.46960 * 299.99285 * 5 3 2 33 33 H 0.97003 * 119.99938 * 359.97438 * 6 5 3 34 34 H 1.09004 * 110.99334 * 273.98714 * 11 9 7 35 35 H 1.08997 * 110.99350 * 37.77035 * 11 9 7 36 36 H 1.09001 * 110.70178 * 82.74745 * 12 11 9 37 37 H 1.08998 * 110.70639 * 205.98196 * 12 11 9 38 38 H 1.09003 * 109.85024 * 262.83366 * 13 12 11 39 39 H 1.08997 * 110.03971 * 141.73586 * 13 12 11 40 40 H 1.09003 * 109.47024 * 175.70458 * 15 14 13 41 41 H 1.09001 * 109.47078 * 295.70027 * 15 14 13 42 42 H 1.09001 * 109.47535 * 59.99091 * 18 16 15 43 43 H 1.09000 * 109.47046 * 179.97438 * 18 16 15 44 44 H 1.09003 * 109.46792 * 299.99386 * 18 16 15 45 45 H 1.09001 * 109.46851 * 294.99950 * 19 16 15 46 46 H 1.08997 * 109.47179 * 54.99939 * 19 16 15 47 47 H 0.96999 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 5.2920 2.9950 0.0003 8 8 6.1273 2.1157 0.0003 9 6 5.7193 4.4402 0.0005 10 1 5.3486 4.9448 -0.8917 11 6 5.2066 5.1540 1.2761 12 6 6.2153 6.3253 1.4078 13 6 7.5399 5.6991 0.9217 14 7 7.1923 4.5414 0.0774 15 6 7.7818 4.6708 -1.2620 16 6 9.2949 4.8592 -1.1371 17 1 9.5028 5.7194 -0.5010 18 6 9.9156 3.6052 -0.5181 19 6 9.8958 5.0940 -2.5245 20 6 11.3651 5.4010 -2.3903 21 1 11.8242 5.4265 -1.4131 22 6 12.1230 5.6493 -3.5149 23 7 11.5639 5.6177 -4.7049 24 14 13.9440 6.0306 -3.3484 25 1 14.3261 6.0049 -1.9136 26 1 14.7326 5.0127 -4.0884 27 1 14.2215 7.3765 -3.9110 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9557 0.7809 -0.8907 32 1 3.9563 0.7806 0.8893 33 1 3.3136 3.3830 0.0005 34 1 4.1921 5.5265 1.1341 35 1 5.2602 4.4934 2.1414 36 1 5.9249 7.1579 0.7669 37 1 6.2986 6.6474 2.4458 38 1 8.1298 5.3702 1.7773 39 1 8.1053 6.4264 0.3392 40 1 7.5741 3.7696 -1.8389 41 1 7.3487 5.5338 -1.7677 42 1 9.7078 2.7449 -1.1543 43 1 10.9937 3.7393 -0.4296 44 1 9.4876 3.4380 0.4703 45 1 9.7658 4.1989 -3.1329 46 1 9.3911 5.9340 -3.0016 47 1 12.0973 5.7920 -5.4961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602695792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:31 Heat of formation + Delta-G solvation = -145.956165 kcal Electronic energy + Delta-G solvation = -26306.363093 eV Core-core repulsion = 22488.146938 eV Total energy + Delta-G solvation = -3818.216155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.82760 -41.11180 -39.37436 -37.76250 -36.88146 -35.61018 -34.46494 -31.96348 -31.30394 -29.62003 -28.73272 -27.61148 -26.93549 -24.86780 -23.48531 -22.43022 -22.08236 -21.17921 -20.06156 -19.04088 -18.56991 -18.40095 -17.82644 -17.62923 -17.01237 -16.63694 -16.43742 -16.14612 -15.66143 -15.59009 -14.99702 -14.79526 -14.46684 -14.31570 -14.16382 -14.14253 -13.87358 -13.60323 -13.37839 -13.24793 -12.98661 -12.80879 -12.72033 -12.60543 -12.38811 -12.21158 -12.08892 -11.90049 -11.88247 -11.79882 -11.62099 -11.40914 -11.03338 -10.93566 -10.83450 -10.53501 -10.29240 -9.20793 -8.17091 -6.26127 0.94752 1.28901 1.39737 1.40632 1.53782 1.61425 2.18836 2.42424 3.06328 3.16174 3.51208 3.61217 3.65249 3.99978 4.06970 4.15819 4.18940 4.26078 4.27480 4.29454 4.34099 4.35541 4.50494 4.61191 4.71528 4.73217 4.86347 4.91865 4.97719 5.01451 5.02563 5.11406 5.13250 5.26041 5.27646 5.35145 5.45351 5.48334 5.54363 5.79649 5.88605 5.98543 6.11128 6.31087 6.43218 6.51937 6.89429 7.21292 7.41895 8.95337 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.021918 B = 0.002499 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.165819 B =11203.916143 C =11922.960093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.526 6.526 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.529 3.471 8 O -0.551 6.551 9 C 0.048 3.952 10 H 0.091 0.909 11 C -0.106 4.106 12 C -0.131 4.131 13 C 0.035 3.965 14 N -0.517 5.517 15 C 0.074 3.926 16 C -0.072 4.072 17 H 0.064 0.936 18 C -0.108 4.108 19 C 0.034 3.966 20 C -0.525 4.525 21 H 0.061 0.939 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.963 3.037 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.278 1.278 28 H 0.064 0.936 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.039 0.961 44 H 0.059 0.941 45 H -0.016 1.016 46 H -0.011 1.011 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.348 -5.810 14.304 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.415 6.415 5 C 0.002 3.998 6 N -0.377 5.377 7 C 0.315 3.685 8 O -0.427 6.427 9 C -0.064 4.064 10 H 0.108 0.892 11 C -0.145 4.145 12 C -0.169 4.169 13 C -0.093 4.093 14 N -0.241 5.241 15 C -0.054 4.054 16 C -0.091 4.091 17 H 0.082 0.918 18 C -0.165 4.165 19 C -0.004 4.004 20 C -0.564 4.564 21 H 0.079 0.921 22 C -0.201 4.201 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.185 1.185 26 H -0.207 1.207 27 H -0.204 1.204 28 H 0.083 0.917 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.256 0.744 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.003 0.997 46 H 0.007 0.993 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.742 -6.619 14.351 28.521 hybrid contribution 0.274 1.051 -1.137 1.573 sum -23.468 -5.568 13.213 27.501 Atomic orbital electron populations 1.23630 0.73919 1.06002 1.02890 1.86488 1.25561 1.31888 1.83386 1.23519 0.91771 0.81782 0.71617 1.90664 1.67293 1.36959 1.46604 1.20670 0.86734 0.85210 1.07174 1.45658 1.07589 1.07698 1.76784 1.20719 0.81324 0.91594 0.74878 1.90729 1.52385 1.50685 1.48918 1.22599 0.89928 0.91920 1.01935 0.89163 1.22700 1.00429 0.96583 0.94745 1.22786 0.93174 0.97548 1.03398 1.22958 0.98525 0.90720 0.97056 1.63050 1.06931 1.41743 1.12369 1.22131 0.95095 0.98853 0.89278 1.21102 0.92626 0.98134 0.97228 0.91799 1.21419 0.99278 0.96221 0.99605 1.19001 0.94925 0.94176 0.92251 1.21638 0.95291 1.46461 0.92962 0.92073 1.25974 1.03540 0.95566 0.95058 1.70114 1.37800 1.51245 0.98510 0.85429 0.79452 0.77729 0.78634 1.18541 1.20675 1.20361 0.91699 0.84990 0.91410 0.86664 0.86009 0.74401 0.87212 0.90236 0.90321 0.88430 0.90588 0.92760 0.93102 0.95256 0.95476 0.94163 0.92183 0.99715 0.99270 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.95 10.57 -51.41 -0.54 -5.50 16 3 C 0.47 7.50 8.03 71.24 0.57 8.07 16 4 O -0.53 -10.40 15.42 21.98 0.34 -10.06 16 5 C 0.13 2.04 6.27 85.63 0.54 2.58 16 6 N -0.72 -13.41 5.47 -466.78 -2.55 -15.96 16 7 C 0.53 13.66 7.21 87.66 0.63 14.30 16 8 O -0.55 -19.33 16.49 -3.04 -0.05 -19.38 16 9 C 0.05 1.14 2.84 44.64 0.13 1.27 16 10 H 0.09 2.00 7.73 -2.39 -0.02 1.98 16 11 C -0.11 -1.72 6.42 31.98 0.21 -1.52 16 12 C -0.13 -2.26 6.95 31.79 0.22 -2.04 16 13 C 0.03 0.90 6.09 86.66 0.53 1.43 16 14 N -0.52 -15.90 3.86 -864.89 -3.34 -19.24 16 15 C 0.07 2.79 4.20 86.30 0.36 3.15 16 16 C -0.07 -3.14 2.09 -10.80 -0.02 -3.17 16 17 H 0.06 2.70 6.13 -2.39 -0.01 2.69 16 18 C -0.11 -4.62 8.88 71.98 0.64 -3.98 16 19 C 0.03 1.86 4.45 29.85 0.13 2.00 16 20 C -0.53 -30.52 8.41 25.60 0.22 -30.30 16 21 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 22 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 23 N -0.94 -58.37 13.29 21.44 0.28 -58.09 16 24 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H 0.06 0.56 8.13 -2.38 -0.02 0.54 16 29 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.42 6.48 7.42 -92.71 -0.69 5.79 16 34 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 1.57 6.06 -2.39 -0.01 1.56 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.03 1.07 8.01 -2.39 -0.02 1.05 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.04 1.78 6.95 -2.39 -0.02 1.76 16 44 H 0.06 2.35 7.72 -2.39 -0.02 2.33 16 45 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -76.29 383.03 2.24 -74.04 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.27 Total: 13.27 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.81 Total: -6.58 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -5.60 Total: -93.29 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.25 Total: -34.93 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -76.29 2.24 -74.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.915 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds