Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00631 * 2 1 4 4 O 1.20832 * 119.99667 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00714 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47594 * 180.02562 * 5 3 2 7 7 C 1.34780 * 120.00171 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99747 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99924 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.36797 * 57.64806 * 9 7 6 11 11 C 1.54374 * 110.41033 * 295.16955 * 9 7 6 12 12 C 1.54259 * 105.05925 * 217.36886 * 11 9 7 13 13 C 1.54375 * 105.06343 * 0.02562 * 12 11 9 14 14 N 1.48559 * 110.40868 * 179.97438 * 9 7 6 15 15 C 1.46901 * 111.00367 * 277.81803 * 14 9 7 16 16 C 1.52995 * 109.47352 * 164.67038 * 15 14 9 17 17 H 1.09003 * 109.47032 * 55.02178 * 16 15 14 18 18 C 1.52992 * 109.47508 * 175.02231 * 16 15 14 19 19 C 1.53004 * 109.47015 * 295.02550 * 16 15 14 20 20 C 1.50705 * 109.46980 * 174.99948 * 19 16 15 21 21 H 1.07998 * 119.99812 * 359.97438 * 20 19 16 22 22 C 1.37871 * 120.00157 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99896 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00240 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47477 * 89.99723 * 24 22 20 26 26 H 1.48501 * 109.47246 * 209.99965 * 24 22 20 27 27 H 1.48504 * 109.46838 * 329.99489 * 24 22 20 28 28 H 1.09000 * 109.47080 * 59.99555 * 1 2 3 29 29 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46864 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.47014 * 59.99558 * 5 3 2 32 32 H 1.09001 * 109.47143 * 300.00708 * 5 3 2 33 33 H 0.97001 * 119.99972 * 359.97438 * 6 5 3 34 34 H 1.09002 * 110.32845 * 336.26805 * 11 9 7 35 35 H 1.08999 * 110.32330 * 98.47700 * 11 9 7 36 36 H 1.09003 * 110.32132 * 118.90072 * 12 11 9 37 37 H 1.09002 * 110.32678 * 241.00297 * 12 11 9 38 38 H 1.09003 * 110.40953 * 265.07935 * 13 12 11 39 39 H 1.08991 * 110.41642 * 142.63139 * 13 12 11 40 40 H 1.08998 * 109.46740 * 44.66988 * 15 14 9 41 41 H 1.09001 * 109.47177 * 284.67098 * 15 14 9 42 42 H 1.09006 * 109.46978 * 305.45018 * 18 16 15 43 43 H 1.08996 * 109.47480 * 185.44696 * 18 16 15 44 44 H 1.09002 * 109.46947 * 65.44631 * 18 16 15 45 45 H 1.08996 * 109.47107 * 294.99301 * 19 16 15 46 46 H 1.08991 * 109.47490 * 55.00114 * 19 16 15 47 47 H 0.97002 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 5.2922 2.9948 -0.0007 8 8 6.1275 2.1154 -0.0016 9 6 5.7196 4.4400 0.0006 10 1 5.3036 4.9578 0.8649 11 6 5.2809 5.1323 -1.3076 12 6 6.4347 6.0943 -1.6583 13 6 7.4737 5.9018 -0.5329 14 7 7.2016 4.5420 0.0000 15 6 7.7405 4.3905 1.3582 16 6 9.2441 4.1185 1.2830 17 1 9.7282 4.9089 0.7093 18 6 9.8276 4.0840 2.6968 19 6 9.4851 2.7713 0.5988 20 6 10.9657 2.5593 0.4142 21 1 11.6648 3.3105 0.7507 22 6 11.4277 1.4064 -0.1844 23 7 10.5763 0.4914 -0.5938 24 14 13.2629 1.1434 -0.4126 25 1 13.8156 0.4504 0.7787 26 1 13.4974 0.3132 -1.6213 27 1 13.9346 2.4576 -0.5769 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7804 0.8891 33 1 3.3138 3.3829 0.0005 34 1 5.1481 4.3956 -2.0998 35 1 4.3578 5.6901 -1.1496 36 1 6.8682 5.8296 -2.6228 37 1 6.0775 7.1240 -1.6743 38 1 7.3323 6.6499 0.2471 39 1 8.4850 5.9575 -0.9355 40 1 7.2447 3.5565 1.8547 41 1 7.5647 5.3061 1.9230 42 1 9.5721 5.0067 3.2179 43 1 10.9118 3.9869 2.6403 44 1 9.4145 3.2338 3.2397 45 1 9.0780 1.9716 1.2176 46 1 8.9930 2.7645 -0.3737 47 1 10.9014 -0.3199 -1.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602695793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -118.368266 kcal Electronic energy + Delta-G solvation = -26825.237553 eV Core-core repulsion = 23008.217699 eV Total energy + Delta-G solvation = -3817.019854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94451 -39.93660 -37.95521 -36.90537 -35.16755 -34.42995 -32.26772 -30.65019 -30.24942 -28.72929 -26.83441 -26.78582 -25.10879 -22.83628 -22.30232 -21.26093 -20.92096 -20.08798 -18.65060 -18.02929 -17.56354 -17.02115 -16.46373 -16.10297 -15.83336 -15.54472 -14.93564 -14.61228 -14.43160 -13.92941 -13.78288 -13.59187 -13.48657 -13.11086 -12.81544 -12.61569 -12.45452 -12.40693 -12.30346 -11.75612 -11.56491 -11.21049 -11.20192 -11.15654 -10.94617 -10.93457 -10.71723 -10.70477 -10.55628 -10.22536 -10.04315 -9.56084 -9.44831 -9.14754 -8.90497 -8.65915 -8.10584 -7.92452 -5.71061 -3.72130 1.77069 2.11369 2.87995 3.19624 3.45188 3.51091 3.54099 4.25837 4.36701 4.65214 4.66957 4.68627 4.73387 4.80777 4.99254 5.09423 5.11565 5.15343 5.26282 5.31597 5.57178 5.62294 5.65558 5.71807 5.81898 5.85528 5.91137 6.05837 6.15940 6.17930 6.26792 6.28793 6.39265 6.46301 6.60032 7.03486 7.06439 7.25931 7.28273 7.41054 7.53947 7.60741 8.03820 8.30900 8.43590 8.49832 8.74709 9.38042 9.88491 11.39140 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.003440 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.019038 B = 8138.324539 C = 9442.514208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.462 3.538 4 O -0.508 6.508 5 C 0.129 3.871 6 N -0.735 5.735 7 C 0.516 3.484 8 O -0.477 6.477 9 C 0.046 3.954 10 H 0.071 0.929 11 C -0.112 4.112 12 C -0.122 4.122 13 C 0.035 3.965 14 N -0.471 5.471 15 C 0.057 3.943 16 C -0.078 4.078 17 H 0.053 0.947 18 C -0.132 4.132 19 C 0.042 3.958 20 C -0.513 4.513 21 H 0.049 0.951 22 C 0.056 3.944 23 N -0.889 5.889 24 Si 0.881 3.119 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.277 1.277 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.009 0.991 46 H 0.037 0.963 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.045 6.837 0.875 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.305 3.695 4 O -0.396 6.396 5 C 0.004 3.996 6 N -0.396 5.396 7 C 0.300 3.700 8 O -0.347 6.347 9 C -0.066 4.066 10 H 0.089 0.911 11 C -0.151 4.151 12 C -0.160 4.160 13 C -0.093 4.093 14 N -0.194 5.194 15 C -0.071 4.071 16 C -0.097 4.097 17 H 0.071 0.929 18 C -0.189 4.189 19 C 0.005 3.995 20 C -0.552 4.552 21 H 0.067 0.933 22 C -0.145 4.145 23 N -0.529 5.529 24 Si 0.710 3.290 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.202 1.202 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.056 0.944 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.379 5.855 0.475 21.209 hybrid contribution 0.057 0.656 0.438 0.791 sum -20.323 6.511 0.913 21.360 Atomic orbital electron populations 1.23323 0.75721 1.04022 1.02685 1.86508 1.23839 1.32683 1.83806 1.23711 0.92073 0.81665 0.72036 1.90657 1.66952 1.36314 1.45683 1.20581 0.86123 0.86136 1.06746 1.45804 1.08361 1.06471 1.78970 1.20490 0.81110 0.91634 0.76726 1.90930 1.50384 1.48936 1.44401 1.22524 0.92664 0.92277 0.99154 0.91125 1.22242 0.98388 0.98513 0.95930 1.22281 0.95350 0.98549 0.99813 1.23163 1.00590 0.89250 0.96307 1.65087 1.04968 1.26203 1.23188 1.22458 0.98716 0.98658 0.87238 1.21144 0.90541 1.02126 0.95922 0.92879 1.21705 1.01876 0.98727 0.96638 1.18983 0.95177 0.88762 0.96621 1.21353 0.92954 1.02999 1.37866 0.93267 1.24993 0.96719 0.96509 0.96236 1.70028 1.33144 1.08608 1.41087 0.86778 0.86956 0.77900 0.77388 1.21021 1.21485 1.20168 0.91702 0.87771 0.91716 0.86789 0.86901 0.75715 0.90580 0.90877 0.90614 0.91389 0.94181 0.89215 0.91384 0.96162 0.95534 0.92036 0.93580 0.97248 0.94440 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.30 10.56 -39.24 -0.41 -3.72 16 3 C 0.46 4.79 8.03 36.00 0.29 5.08 16 4 O -0.51 -6.07 15.42 -18.76 -0.29 -6.36 16 5 C 0.13 1.42 6.27 -5.20 -0.03 1.38 16 6 N -0.74 -8.83 5.51 -61.47 -0.34 -9.17 16 7 C 0.52 8.14 6.74 -10.98 -0.07 8.06 16 8 O -0.48 -10.20 15.98 5.55 0.09 -10.12 16 9 C 0.05 0.65 2.65 -67.23 -0.18 0.47 16 10 H 0.07 0.85 7.99 -51.93 -0.42 0.44 16 11 C -0.11 -1.27 6.53 -25.35 -0.17 -1.44 16 12 C -0.12 -1.40 7.00 -25.35 -0.18 -1.58 16 13 C 0.03 0.50 6.09 -2.18 -0.01 0.48 16 14 N -0.47 -8.23 3.93 -223.52 -0.88 -9.11 16 15 C 0.06 1.05 4.04 -3.83 -0.02 1.04 16 16 C -0.08 -1.70 2.43 -90.62 -0.22 -1.92 16 17 H 0.05 1.16 7.59 -51.93 -0.39 0.76 16 18 C -0.13 -2.62 8.91 37.15 0.33 -2.29 16 19 C 0.04 1.15 4.39 -27.88 -0.12 1.03 16 20 C -0.51 -15.20 8.48 -34.44 -0.29 -15.49 16 21 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -28.46 13.29 55.43 0.74 -27.72 16 24 Si 0.88 22.72 29.54 -169.99 -5.02 17.70 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.41 4.17 7.44 -40.82 -0.30 3.87 16 34 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 0.51 7.68 -51.93 -0.40 0.11 16 39 H 0.09 1.39 7.89 -51.93 -0.41 0.98 16 40 H 0.07 1.35 7.40 -51.93 -0.38 0.96 16 41 H 0.02 0.33 7.65 -51.93 -0.40 -0.07 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.04 1.14 7.62 -51.93 -0.40 0.75 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 384.25 15.07 5.79 5.79 Total: -1.00 -36.81 384.25 -8.06 -44.87 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.03 Total: 0.11 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 0.30 Total: -2.27 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.48 Total: -46.00 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.62 Total: -20.20 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.81 -8.06 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.494 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds