Wall clock time and date at job start Fri Apr 10 2020 18:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00631 * 2 1 4 4 O 1.20832 * 119.99667 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00714 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47594 * 180.02562 * 5 3 2 7 7 C 1.34780 * 120.00171 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99747 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99924 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.36797 * 57.64806 * 9 7 6 11 11 C 1.54374 * 110.41033 * 295.16955 * 9 7 6 12 12 C 1.54259 * 105.05925 * 217.36886 * 11 9 7 13 13 C 1.54375 * 105.06343 * 0.02562 * 12 11 9 14 14 N 1.48559 * 110.40868 * 179.97438 * 9 7 6 15 15 C 1.46901 * 111.00367 * 277.81803 * 14 9 7 16 16 C 1.52995 * 109.47352 * 164.67038 * 15 14 9 17 17 H 1.09003 * 109.47032 * 55.02178 * 16 15 14 18 18 C 1.52992 * 109.47508 * 175.02231 * 16 15 14 19 19 C 1.53004 * 109.47015 * 295.02550 * 16 15 14 20 20 C 1.50705 * 109.46980 * 174.99948 * 19 16 15 21 21 H 1.07998 * 119.99812 * 359.97438 * 20 19 16 22 22 C 1.37871 * 120.00157 * 179.97438 * 20 19 16 23 23 N 1.31519 * 119.99896 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00240 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47477 * 89.99723 * 24 22 20 26 26 H 1.48501 * 109.47246 * 209.99965 * 24 22 20 27 27 H 1.48504 * 109.46838 * 329.99489 * 24 22 20 28 28 H 1.09000 * 109.47080 * 59.99555 * 1 2 3 29 29 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46864 * 300.00206 * 1 2 3 31 31 H 1.09005 * 109.47014 * 59.99558 * 5 3 2 32 32 H 1.09001 * 109.47143 * 300.00708 * 5 3 2 33 33 H 0.97001 * 119.99972 * 359.97438 * 6 5 3 34 34 H 1.09002 * 110.32845 * 336.26805 * 11 9 7 35 35 H 1.08999 * 110.32330 * 98.47700 * 11 9 7 36 36 H 1.09003 * 110.32132 * 118.90072 * 12 11 9 37 37 H 1.09002 * 110.32678 * 241.00297 * 12 11 9 38 38 H 1.09003 * 110.40953 * 265.07935 * 13 12 11 39 39 H 1.08991 * 110.41642 * 142.63139 * 13 12 11 40 40 H 1.08998 * 109.46740 * 44.66988 * 15 14 9 41 41 H 1.09001 * 109.47177 * 284.67098 * 15 14 9 42 42 H 1.09006 * 109.46978 * 305.45018 * 18 16 15 43 43 H 1.08996 * 109.47480 * 185.44696 * 18 16 15 44 44 H 1.09002 * 109.46947 * 65.44631 * 18 16 15 45 45 H 1.08996 * 109.47107 * 294.99301 * 19 16 15 46 46 H 1.08991 * 109.47490 * 55.00114 * 19 16 15 47 47 H 0.97002 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 5.2922 2.9948 -0.0007 8 8 6.1275 2.1154 -0.0016 9 6 5.7196 4.4400 0.0006 10 1 5.3036 4.9578 0.8649 11 6 5.2809 5.1323 -1.3076 12 6 6.4347 6.0943 -1.6583 13 6 7.4737 5.9018 -0.5329 14 7 7.2016 4.5420 0.0000 15 6 7.7405 4.3905 1.3582 16 6 9.2441 4.1185 1.2830 17 1 9.7282 4.9089 0.7093 18 6 9.8276 4.0840 2.6968 19 6 9.4851 2.7713 0.5988 20 6 10.9657 2.5593 0.4142 21 1 11.6648 3.3105 0.7507 22 6 11.4277 1.4064 -0.1844 23 7 10.5763 0.4914 -0.5938 24 14 13.2629 1.1434 -0.4126 25 1 13.8156 0.4504 0.7787 26 1 13.4974 0.3132 -1.6213 27 1 13.9346 2.4576 -0.5769 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7807 -0.8908 32 1 3.9565 0.7804 0.8891 33 1 3.3138 3.3829 0.0005 34 1 5.1481 4.3956 -2.0998 35 1 4.3578 5.6901 -1.1496 36 1 6.8682 5.8296 -2.6228 37 1 6.0775 7.1240 -1.6743 38 1 7.3323 6.6499 0.2471 39 1 8.4850 5.9575 -0.9355 40 1 7.2447 3.5565 1.8547 41 1 7.5647 5.3061 1.9230 42 1 9.5721 5.0067 3.2179 43 1 10.9118 3.9869 2.6403 44 1 9.4145 3.2338 3.2397 45 1 9.0780 1.9716 1.2176 46 1 8.9930 2.7645 -0.3737 47 1 10.9014 -0.3199 -1.0145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602695793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:35 Heat of formation + Delta-G solvation = -145.083374 kcal Electronic energy + Delta-G solvation = -26826.396007 eV Core-core repulsion = 23008.217699 eV Total energy + Delta-G solvation = -3818.178308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83594 -41.08041 -39.17719 -37.76490 -36.86481 -35.60440 -34.38718 -32.05324 -31.27361 -29.56271 -28.92555 -27.60506 -26.55712 -24.78266 -23.53398 -22.16723 -22.04816 -21.20906 -20.34389 -19.02447 -18.46316 -18.41749 -17.83387 -17.41798 -16.98013 -16.68240 -16.53667 -15.97913 -15.60189 -15.37325 -14.98807 -14.77450 -14.46250 -14.34927 -14.14122 -14.05410 -13.86952 -13.65878 -13.40238 -13.12162 -12.99110 -12.76294 -12.65778 -12.57654 -12.39848 -12.17760 -12.08918 -11.89203 -11.82850 -11.80073 -11.51568 -11.41207 -10.92151 -10.85809 -10.73826 -10.43519 -10.28368 -9.19602 -8.05244 -6.16128 0.92140 1.28082 1.38861 1.41678 1.52073 1.66079 2.21758 2.46534 3.12986 3.25313 3.52045 3.63916 3.66736 4.02151 4.07164 4.16179 4.22672 4.26187 4.30583 4.33290 4.35564 4.39302 4.56327 4.63290 4.70049 4.72285 4.79285 4.84293 4.95233 4.96319 5.07390 5.12934 5.18857 5.25918 5.29665 5.36463 5.45724 5.54659 5.70991 5.93556 6.05116 6.13963 6.24406 6.42661 6.44339 6.52815 7.05297 7.28864 7.50634 9.05758 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.003440 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.019038 B = 8138.324539 C = 9442.514208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.474 3.526 4 O -0.522 6.522 5 C 0.125 3.875 6 N -0.717 5.717 7 C 0.516 3.484 8 O -0.547 6.547 9 C 0.046 3.954 10 H 0.101 0.899 11 C -0.105 4.105 12 C -0.115 4.115 13 C 0.032 3.968 14 N -0.514 5.514 15 C 0.070 3.930 16 C -0.074 4.074 17 H 0.053 0.947 18 C -0.125 4.125 19 C 0.061 3.939 20 C -0.530 4.530 21 H 0.058 0.942 22 C -0.007 4.007 23 N -0.933 5.933 24 Si 0.959 3.041 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.262 1.262 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.034 0.966 45 H -0.036 1.036 46 H -0.004 1.004 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.948 9.105 1.323 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.412 6.412 5 C 0.000 4.000 6 N -0.376 5.376 7 C 0.302 3.698 8 O -0.422 6.422 9 C -0.066 4.066 10 H 0.118 0.882 11 C -0.143 4.143 12 C -0.153 4.153 13 C -0.095 4.095 14 N -0.239 5.239 15 C -0.058 4.058 16 C -0.093 4.093 17 H 0.071 0.929 18 C -0.183 4.183 19 C 0.024 3.976 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.203 4.203 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.186 1.186 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.053 0.947 45 H -0.017 1.017 46 H 0.015 0.985 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.338 8.154 0.927 22.862 hybrid contribution 0.227 -0.109 0.283 0.379 sum -21.111 8.045 1.210 22.624 Atomic orbital electron populations 1.23645 0.73757 1.06015 1.03005 1.86496 1.25728 1.31871 1.83351 1.23355 0.91422 0.81840 0.71624 1.90646 1.67137 1.36789 1.46614 1.20600 0.87130 0.85565 1.06679 1.45609 1.07513 1.07354 1.77145 1.20983 0.81400 0.92118 0.75307 1.90916 1.52350 1.50882 1.48017 1.22654 0.90797 0.91272 1.01847 0.88151 1.22289 1.00009 0.98228 0.93817 1.22280 0.94456 1.00573 0.98003 1.23203 1.00306 0.88203 0.97765 1.64913 1.07563 1.28712 1.22684 1.22183 0.95809 0.99276 0.88582 1.20998 0.93691 0.98196 0.96377 0.92895 1.21621 1.00615 1.00478 0.95601 1.18665 0.93710 0.90967 0.94255 1.21788 0.94073 1.03326 1.37628 0.92409 1.26003 1.02399 0.96158 0.95777 1.70217 1.35903 1.09253 1.42027 0.85542 0.80093 0.78386 0.77552 1.19938 1.21081 1.18613 0.91399 0.85049 0.91389 0.87088 0.87011 0.74274 0.92046 0.86755 0.91912 0.87754 0.91733 0.91582 0.93656 0.92588 0.91254 0.93509 0.94655 1.01719 0.98516 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.45 10.56 -51.35 -0.54 -6.99 16 3 C 0.47 9.60 8.03 71.23 0.57 10.18 16 4 O -0.52 -11.88 15.42 21.95 0.34 -11.54 16 5 C 0.13 2.83 6.27 85.63 0.54 3.37 16 6 N -0.72 -17.14 5.51 -466.78 -2.57 -19.72 16 7 C 0.52 16.71 6.74 87.66 0.59 17.30 16 8 O -0.55 -25.15 15.98 -3.06 -0.05 -25.19 16 9 C 0.05 1.24 2.65 44.31 0.12 1.36 16 10 H 0.10 2.12 7.99 -2.39 -0.02 2.10 16 11 C -0.11 -2.13 6.53 31.49 0.21 -1.93 16 12 C -0.12 -2.37 7.00 31.49 0.22 -2.15 16 13 C 0.03 0.88 6.09 86.45 0.53 1.41 16 14 N -0.51 -18.06 3.93 -861.07 -3.39 -21.45 16 15 C 0.07 2.56 4.04 86.30 0.35 2.91 16 16 C -0.07 -3.26 2.43 -10.80 -0.03 -3.29 16 17 H 0.05 2.33 7.59 -2.39 -0.02 2.31 16 18 C -0.13 -4.93 8.91 71.98 0.64 -4.29 16 19 C 0.06 3.59 4.39 29.85 0.13 3.72 16 20 C -0.53 -32.43 8.48 25.60 0.22 -32.21 16 21 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 22 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 23 N -0.93 -62.37 13.29 21.45 0.28 -62.08 16 24 Si 0.96 47.52 29.54 68.60 2.03 49.55 16 25 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 28 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 31 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.42 7.99 7.44 -92.71 -0.69 7.30 16 34 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 39 H 0.07 2.06 7.89 -2.39 -0.02 2.04 16 40 H 0.04 1.85 7.40 -2.39 -0.02 1.83 16 41 H 0.06 1.64 7.65 -2.39 -0.02 1.63 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.05 1.94 7.12 -2.39 -0.02 1.92 16 44 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 45 H -0.04 -2.37 8.14 -2.39 -0.02 -2.39 16 46 H 0.00 -0.24 7.62 -2.39 -0.02 -0.26 16 47 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -85.64 384.25 2.10 -83.54 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.26 Total: 15.96 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.74 Total: -2.08 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -5.67 Total: -103.25 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.25 Total: -43.73 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -85.64 2.10 -83.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.545 kcal (2) G-P(sol) polarization free energy of solvation -85.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds