Wall clock time and date at job start Fri Apr 10 2020 18:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00052 * 2 1 4 4 O 1.20833 * 119.99751 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99932 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46805 * 179.97438 * 5 3 2 7 7 C 1.34777 * 119.99581 * 179.97438 * 6 5 3 8 8 O 1.21278 * 120.00233 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99513 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.33998 * 327.19102 * 9 7 6 11 11 C 1.54915 * 110.37202 * 89.44516 * 9 7 6 12 12 C 1.55139 * 101.68768 * 155.87901 * 11 9 7 13 13 C 1.54370 * 102.99826 * 324.39591 * 12 11 9 14 14 N 1.47445 * 107.25071 * 22.22574 * 13 12 11 15 15 C 1.46902 * 110.99469 * 123.29273 * 14 13 12 16 16 C 1.52998 * 109.46844 * 173.82799 * 15 14 13 17 17 H 1.08997 * 109.47744 * 53.91288 * 16 15 14 18 18 C 1.53000 * 109.47201 * 293.91296 * 16 15 14 19 19 C 1.53001 * 109.47217 * 173.91287 * 16 15 14 20 20 C 1.50703 * 109.47306 * 184.99566 * 19 16 15 21 21 H 1.07994 * 119.99682 * 0.02562 * 20 19 16 22 22 C 1.37872 * 119.99820 * 180.02562 * 20 19 16 23 23 N 1.31521 * 120.00108 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00465 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47120 * 89.99997 * 24 22 20 26 26 H 1.48494 * 109.47511 * 210.00249 * 24 22 20 27 27 H 1.48506 * 109.47158 * 330.00150 * 24 22 20 28 28 H 1.08999 * 109.46898 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47636 * 300.00759 * 1 2 3 30 30 H 1.08999 * 109.46491 * 60.00696 * 1 2 3 31 31 H 1.08997 * 109.47114 * 60.00124 * 5 3 2 32 32 H 1.08998 * 109.47035 * 299.99609 * 5 3 2 33 33 H 0.97000 * 120.00162 * 0.02562 * 6 5 3 34 34 H 1.08995 * 110.99059 * 273.98721 * 11 9 7 35 35 H 1.09000 * 110.98634 * 37.76430 * 11 9 7 36 36 H 1.08997 * 110.70767 * 82.74530 * 12 11 9 37 37 H 1.08995 * 110.70316 * 205.98498 * 12 11 9 38 38 H 1.08999 * 109.84922 * 262.83581 * 13 12 11 39 39 H 1.08996 * 110.04362 * 141.73615 * 13 12 11 40 40 H 1.08999 * 109.47221 * 293.82065 * 15 14 13 41 41 H 1.08999 * 109.47163 * 53.82754 * 15 14 13 42 42 H 1.08997 * 109.47051 * 57.35343 * 18 16 15 43 43 H 1.08994 * 109.47519 * 177.35497 * 18 16 15 44 44 H 1.08996 * 109.47224 * 297.35793 * 18 16 15 45 45 H 1.08998 * 109.47260 * 305.00343 * 19 16 15 46 46 H 1.08999 * 109.46841 * 64.99985 * 19 16 15 47 47 H 0.96995 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 5.2921 2.9950 0.0007 8 8 6.1274 2.1157 0.0016 9 6 5.7193 4.4402 -0.0006 10 1 5.0035 5.0463 -0.5558 11 6 5.8573 4.9631 1.4511 12 6 6.8541 6.1378 1.2685 13 6 7.7985 5.6229 0.1613 14 7 7.0722 4.5764 -0.5812 15 6 7.0008 4.8997 -2.0124 16 6 6.3794 3.7249 -2.7702 17 1 5.4211 3.4675 -2.3191 18 6 7.3173 2.5182 -2.6983 19 6 6.1651 4.1177 -4.2333 20 6 5.4420 3.0072 -4.9510 21 1 5.1628 2.1111 -4.4169 22 6 5.1370 3.1354 -6.2894 23 7 4.5055 2.1665 -6.9157 24 14 5.6206 4.6851 -7.2135 25 1 6.9765 4.5125 -7.7940 26 1 4.6438 4.9367 -8.3033 27 1 5.6259 5.8381 -6.2776 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5137 -0.8901 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 3.3137 3.3830 -0.0005 34 1 4.8996 5.3191 1.8305 35 1 6.2731 4.1960 2.1044 36 1 6.3333 7.0381 0.9425 37 1 7.4051 6.3225 2.1907 38 1 8.6992 5.2027 0.6088 39 1 8.0647 6.4381 -0.5116 40 1 6.3864 5.7889 -2.1538 41 1 8.0048 5.0874 -2.3930 42 1 7.5073 2.2675 -1.6547 43 1 6.8539 1.6675 -3.1977 44 1 8.2589 2.7600 -3.1910 45 1 5.5698 5.0295 -4.2813 46 1 7.1310 4.2890 -4.7086 47 1 4.2905 2.2568 -7.8572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602695794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:40 Heat of formation + Delta-G solvation = -118.970374 kcal Electronic energy + Delta-G solvation = -27414.923244 eV Core-core repulsion = 23597.877281 eV Total energy + Delta-G solvation = -3817.045963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.80376 -40.08478 -38.01822 -36.74235 -35.37336 -34.37498 -32.43367 -30.81836 -30.25622 -28.74661 -27.31000 -26.77003 -25.38547 -22.99761 -22.01692 -21.30398 -20.92916 -20.02529 -18.86908 -18.01002 -17.39044 -16.91135 -16.82687 -16.38860 -15.85698 -15.38117 -15.13410 -14.71568 -14.38021 -14.04448 -13.73668 -13.55711 -13.47788 -13.19125 -13.11918 -12.71733 -12.53446 -12.33634 -12.23466 -11.92236 -11.81747 -11.49873 -11.36294 -11.13486 -11.02062 -10.90341 -10.79541 -10.76278 -10.68035 -10.33948 -9.77777 -9.68548 -9.55749 -9.31049 -9.03709 -8.99622 -8.47778 -8.09640 -5.98121 -3.94351 1.96018 2.26375 2.81314 3.26828 3.33516 3.40503 3.43833 4.14566 4.45784 4.49847 4.51820 4.61000 4.84412 4.91161 4.99970 5.05027 5.15921 5.20852 5.33690 5.34842 5.35767 5.42045 5.51384 5.58251 5.65761 5.72173 5.80545 5.91746 6.07251 6.09147 6.12355 6.32912 6.38941 6.48691 6.71969 6.95538 7.04451 7.19840 7.29349 7.31752 7.44350 7.45642 7.55095 7.60040 7.87113 8.43577 8.62568 9.08088 9.64956 11.15445 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.008052 B = 0.005495 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.520285 B = 5093.884824 C = 7807.092679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.462 3.538 4 O -0.505 6.505 5 C 0.130 3.870 6 N -0.730 5.730 7 C 0.532 3.468 8 O -0.503 6.503 9 C 0.059 3.941 10 H 0.076 0.924 11 C -0.116 4.116 12 C -0.139 4.139 13 C 0.044 3.956 14 N -0.504 5.504 15 C 0.051 3.949 16 C -0.070 4.070 17 H 0.054 0.946 18 C -0.130 4.130 19 C -0.009 4.009 20 C -0.508 4.508 21 H 0.072 0.928 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.878 3.122 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.267 1.267 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.408 0.592 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.010 0.990 46 H 0.011 0.989 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 3.296 19.660 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.305 3.695 4 O -0.393 6.393 5 C 0.005 3.995 6 N -0.388 5.388 7 C 0.317 3.683 8 O -0.375 6.375 9 C -0.053 4.053 10 H 0.094 0.906 11 C -0.154 4.154 12 C -0.178 4.178 13 C -0.083 4.083 14 N -0.228 5.228 15 C -0.076 4.076 16 C -0.089 4.089 17 H 0.072 0.928 18 C -0.187 4.187 19 C -0.047 4.047 20 C -0.546 4.546 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.545 5.545 24 Si 0.705 3.295 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.192 1.192 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.245 0.755 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.028 0.972 46 H 0.030 0.970 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.013 2.406 19.511 19.762 hybrid contribution -0.923 1.910 -1.000 2.345 sum -2.936 4.317 18.512 19.234 Atomic orbital electron populations 1.23320 0.75703 1.03954 1.02764 1.86486 1.23878 1.32663 1.83883 1.23632 0.92020 0.81730 0.72140 1.90667 1.66875 1.36298 1.45440 1.20575 0.86505 0.85869 1.06504 1.45752 1.08389 1.06824 1.77882 1.20259 0.81023 0.91337 0.75657 1.90673 1.50899 1.49392 1.46560 1.22413 0.93103 0.93033 0.96768 0.90624 1.22658 1.00073 0.98167 0.94537 1.22784 0.97534 0.97781 0.99659 1.22827 0.97563 0.92949 0.95006 1.63151 1.12406 1.43942 1.03282 1.22627 1.01104 0.97730 0.86126 1.20999 0.97729 0.93896 0.96245 0.92788 1.21690 0.97728 0.97685 1.01590 1.19635 0.96250 0.97018 0.91824 1.21099 1.35891 1.02964 0.94605 0.90975 1.25020 0.94858 0.96078 0.97629 1.69917 1.41622 1.32568 1.10428 0.86814 0.78406 0.84622 0.79623 1.20352 1.21555 1.19201 0.87833 0.91856 0.91463 0.86487 0.87195 0.75474 0.90312 0.90034 0.91273 0.90469 0.90345 0.92486 0.95176 0.90710 0.91371 0.92931 0.94739 0.97188 0.97041 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.06 10.57 -39.26 -0.41 -4.47 16 3 C 0.46 5.85 8.03 36.01 0.29 6.14 16 4 O -0.51 -7.37 15.42 -18.76 -0.29 -7.66 16 5 C 0.13 1.61 6.27 -5.19 -0.03 1.58 16 6 N -0.73 -9.76 5.53 -61.47 -0.34 -10.10 16 7 C 0.53 8.10 4.97 -10.99 -0.05 8.05 16 8 O -0.50 -9.18 14.20 5.56 0.08 -9.10 16 9 C 0.06 0.80 2.34 -67.33 -0.16 0.64 16 10 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 11 C -0.12 -1.18 6.48 -24.59 -0.16 -1.34 16 12 C -0.14 -1.27 6.95 -24.88 -0.17 -1.45 16 13 C 0.04 0.51 6.89 -2.81 -0.02 0.49 16 14 N -0.50 -7.52 3.98 -224.71 -0.89 -8.42 16 15 C 0.05 0.87 3.89 -3.82 -0.01 0.86 16 16 C -0.07 -1.45 1.93 -90.62 -0.17 -1.63 16 17 H 0.05 1.17 5.89 -51.93 -0.31 0.86 16 18 C -0.13 -2.77 8.61 37.16 0.32 -2.45 16 19 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 20 C -0.51 -14.69 9.00 -34.44 -0.31 -15.00 16 21 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 22 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 23 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 24 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.49 8.13 -51.94 -0.42 0.07 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.41 5.08 7.44 -40.82 -0.30 4.78 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.63 7.58 -51.93 -0.39 0.23 16 40 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 41 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 42 H 0.07 1.42 5.45 -51.93 -0.28 1.14 16 43 H 0.05 1.24 7.03 -51.93 -0.36 0.87 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16 46 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -34.88 373.75 -7.59 -42.46 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.85 Total: 2.97 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.38 Total: -1.24 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.46 Total: -46.12 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.62 Total: -21.23 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.88 -7.59 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602695794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.507 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds