Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47068 * 2 1 4 4 C 1.34232 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99790 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00146 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.69697 * 358.30211 * 6 4 3 8 8 C 1.52762 * 109.50776 * 238.18979 * 6 4 3 9 9 C 1.53037 * 109.38298 * 185.70505 * 8 6 4 10 10 C 1.53040 * 109.53983 * 61.23752 * 9 8 6 11 11 C 1.53187 * 109.31187 * 298.63631 * 10 9 8 12 12 N 1.46919 * 109.58914 * 118.65834 * 6 4 3 13 13 C 1.34770 * 120.63216 * 353.42173 * 12 6 4 14 14 O 1.21281 * 120.00296 * 353.62282 * 13 12 6 15 15 C 1.50708 * 120.00081 * 173.62215 * 13 12 6 16 16 N 1.46905 * 109.46916 * 179.97438 * 15 13 12 17 17 C 1.46899 * 110.99615 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47483 * 324.99676 * 17 16 15 19 19 C 1.52996 * 109.47022 * 85.00204 * 17 16 15 20 20 C 1.50708 * 109.46710 * 204.99916 * 17 16 15 21 21 H 1.07995 * 119.99944 * 359.97438 * 20 17 16 22 22 C 1.37881 * 119.99304 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99468 * 180.02562 * 22 20 17 24 24 Si 1.86797 * 120.00554 * 0.02562 * 22 20 17 25 25 H 1.48493 * 109.47152 * 89.99797 * 24 22 20 26 26 H 1.48494 * 109.47053 * 210.00120 * 24 22 20 27 27 H 1.48500 * 109.46866 * 329.99870 * 24 22 20 28 28 H 1.09000 * 109.46848 * 59.99650 * 1 2 3 29 29 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46709 * 299.99984 * 1 2 3 31 31 H 1.09004 * 109.46963 * 240.00415 * 2 1 3 32 32 H 1.08994 * 109.47294 * 120.00303 * 2 1 3 33 33 H 1.09003 * 109.56398 * 65.66574 * 8 6 4 34 34 H 1.09005 * 109.38468 * 305.62932 * 8 6 4 35 35 H 1.09002 * 109.45711 * 301.21213 * 9 8 6 36 36 H 1.09003 * 109.45955 * 181.26296 * 9 8 6 37 37 H 1.08994 * 109.49485 * 178.68289 * 10 9 8 38 38 H 1.09005 * 109.49647 * 58.58555 * 10 9 8 39 39 H 1.09007 * 109.58692 * 294.84726 * 11 10 9 40 40 H 1.08999 * 109.58651 * 174.42185 * 11 10 9 41 41 H 1.08998 * 109.47006 * 60.00240 * 15 13 12 42 42 H 1.09000 * 109.46964 * 299.99753 * 15 13 12 43 43 H 1.00902 * 110.99974 * 303.95207 * 16 15 13 44 44 H 1.08998 * 109.47065 * 179.97438 * 19 17 16 45 45 H 1.08997 * 109.47634 * 59.99892 * 19 17 16 46 46 H 1.08997 * 109.47353 * 299.99922 * 19 17 16 47 47 H 0.97002 * 119.99955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1133 3.6690 -0.0296 8 6 4.8165 3.1194 -1.2240 9 6 5.5112 4.4809 -1.1470 10 6 6.3864 4.5388 0.1071 11 6 5.5040 4.3754 1.3486 12 7 4.7231 3.1381 1.2143 13 6 4.7468 2.2025 2.1841 14 8 4.0149 1.2380 2.1143 15 6 5.6830 2.3548 3.3553 16 7 5.5182 1.2135 4.2655 17 6 6.4175 1.3280 5.4213 18 1 7.3554 1.7866 5.1081 19 6 5.7592 2.1957 6.4958 20 6 6.6918 -0.0438 5.9820 21 1 6.2427 -0.9134 5.5255 22 6 7.5155 -0.1883 7.0783 23 7 7.7553 -1.3854 7.5672 24 14 8.2906 1.3161 7.8690 25 1 7.3891 1.8394 8.9266 26 1 9.5953 0.9418 8.4713 27 1 8.5037 2.3630 6.8376 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.2117 3.0701 -2.1295 34 1 5.5667 2.3288 -1.2440 35 1 4.7602 5.2697 -1.1027 36 1 6.1334 4.6215 -2.0309 37 1 6.8988 5.4999 0.1489 38 1 7.1217 3.7349 0.0751 39 1 4.8282 5.2268 1.4313 40 1 6.1316 4.3168 2.2378 41 1 5.4533 3.2786 3.8863 42 1 6.7116 2.3881 2.9963 43 1 4.5578 1.1230 4.5616 44 1 6.4263 2.2802 7.3536 45 1 4.8214 1.7370 6.8091 46 1 5.5607 3.1878 6.0903 47 1 8.3345 -1.4871 8.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -105.099510 kcal Electronic energy + Delta-G solvation = -27537.579459 eV Core-core repulsion = 23721.134981 eV Total energy + Delta-G solvation = -3816.444477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.14772 -39.30773 -37.64730 -36.31887 -35.88640 -33.18437 -32.50628 -32.10577 -31.34030 -29.90965 -26.73646 -25.35625 -24.78722 -24.45703 -22.90028 -21.18225 -21.10652 -20.22285 -19.04151 -17.88698 -17.02870 -16.72014 -16.49217 -15.91745 -15.74635 -15.43249 -14.84017 -14.66109 -14.60749 -14.10204 -13.89761 -13.78482 -13.53179 -13.19873 -13.05873 -12.87536 -12.69916 -12.58241 -12.31240 -11.92854 -11.87329 -11.76995 -11.53927 -11.50700 -11.44353 -11.18381 -11.04841 -10.99724 -10.56372 -10.35749 -10.13403 -10.07200 -9.59077 -9.42294 -9.11668 -8.81648 -8.55045 -7.44339 -6.01214 -3.98768 2.19587 2.67334 2.80677 3.05889 3.25594 3.33299 3.38415 4.32761 4.41287 4.44227 4.53100 4.64815 4.75667 4.82418 4.88738 4.95348 5.04058 5.09034 5.11499 5.25488 5.27619 5.32506 5.37552 5.46276 5.56891 5.60209 5.63644 5.68827 5.71606 5.74745 5.80550 5.90532 5.99674 6.13909 6.21949 6.27682 6.46313 6.66068 6.68815 7.07291 7.21693 7.68790 7.87327 8.02233 8.23205 8.35701 8.71548 9.12996 9.60224 11.12495 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003861 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.171739 B = 7249.427770 C = 8646.840024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.363 6.363 4 C 0.476 3.524 5 O -0.486 6.486 6 C 0.159 3.841 7 H 0.097 0.903 8 C -0.126 4.126 9 C -0.115 4.115 10 C -0.140 4.140 11 C 0.111 3.889 12 N -0.614 5.614 13 C 0.513 3.487 14 O -0.493 6.493 15 C 0.049 3.951 16 N -0.655 5.655 17 C 0.185 3.815 18 H 0.035 0.965 19 C -0.184 4.184 20 C -0.497 4.497 21 H 0.083 0.917 22 C 0.067 3.933 23 N -0.900 5.900 24 Si 0.887 3.113 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.341 0.659 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 16.085 -18.751 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 O -0.281 6.281 4 C 0.317 3.683 5 O -0.371 6.371 6 C 0.055 3.945 7 H 0.115 0.885 8 C -0.165 4.165 9 C -0.152 4.152 10 C -0.179 4.179 11 C -0.011 4.011 12 N -0.354 5.354 13 C 0.302 3.698 14 O -0.366 6.366 15 C -0.084 4.084 16 N -0.286 5.286 17 C 0.076 3.924 18 H 0.052 0.948 19 C -0.243 4.243 20 C -0.535 4.535 21 H 0.101 0.899 22 C -0.134 4.134 23 N -0.539 5.539 24 Si 0.718 3.282 25 H -0.208 1.208 26 H -0.224 1.224 27 H -0.195 1.195 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.116 0.884 43 H 0.159 0.841 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.031 14.671 -18.975 25.629 hybrid contribution 0.120 1.422 1.136 1.824 sum -8.911 16.093 -17.839 25.625 Atomic orbital electron populations 1.21791 0.93063 1.02766 1.03079 1.22927 0.94654 0.80203 1.02810 1.86366 1.24438 1.32526 1.84721 1.22606 0.81065 0.91573 0.73030 1.90701 1.60027 1.42374 1.43999 1.20490 0.94127 0.92752 0.87170 0.88523 1.21836 0.99495 0.99507 0.95624 1.21484 0.99121 0.96212 0.98416 1.21983 0.98424 1.03112 0.94352 1.21808 0.94223 0.85616 0.99487 1.48171 1.48800 1.20748 1.17678 1.21147 0.83747 0.81248 0.83699 1.90695 1.40656 1.29725 1.75555 1.21830 0.98808 0.95205 0.92556 1.60358 1.11237 1.38075 1.18937 1.19686 0.91072 0.96570 0.85065 0.94758 1.22884 1.01812 0.98225 1.01350 1.20972 1.28458 0.91840 1.12280 0.89873 1.24947 0.96201 0.95576 0.96719 1.69891 1.37910 1.21681 1.24390 0.86883 0.78071 0.83558 0.79713 1.20787 1.22408 1.19538 0.91930 0.90383 0.91555 0.91815 0.90584 0.90177 0.89932 0.91372 0.90885 0.90196 0.90811 0.90916 0.88791 0.93390 0.88443 0.84057 0.93461 0.92547 0.95590 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.07 0.89 6.19 37.16 0.23 1.12 16 3 O -0.36 -5.33 10.22 -41.26 -0.42 -5.75 16 4 C 0.48 7.50 4.50 36.01 0.16 7.66 16 5 O -0.49 -9.53 14.34 -26.92 -0.39 -9.91 16 6 C 0.16 1.88 3.33 -68.98 -0.23 1.65 16 7 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.13 -1.16 5.30 -26.83 -0.14 -1.30 16 9 C -0.11 -0.74 5.89 -26.69 -0.16 -0.90 16 10 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 11 C 0.11 0.94 6.35 -3.71 -0.02 0.92 16 12 N -0.61 -7.74 2.98 -166.79 -0.50 -8.24 16 13 C 0.51 8.70 7.42 -10.98 -0.08 8.61 16 14 O -0.49 -10.30 11.98 -21.12 -0.25 -10.55 16 15 C 0.05 0.82 4.32 -4.97 -0.02 0.80 16 16 N -0.65 -14.26 5.85 -109.21 -0.64 -14.90 16 17 C 0.18 4.39 2.17 -68.86 -0.15 4.25 16 18 H 0.03 0.82 6.86 -51.93 -0.36 0.47 16 19 C -0.18 -3.92 8.64 37.16 0.32 -3.60 16 20 C -0.50 -14.43 9.42 -34.44 -0.32 -14.75 16 21 H 0.08 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 23 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 24 Si 0.89 21.87 24.37 -169.99 -4.14 17.73 16 25 H -0.28 -6.73 6.87 56.52 0.39 -6.35 16 26 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 27 H -0.27 -6.26 6.53 56.52 0.37 -5.90 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.95 7.92 -51.93 -0.41 0.53 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 40 H 0.09 0.78 5.93 -51.93 -0.31 0.47 16 41 H 0.05 0.69 6.99 -51.93 -0.36 0.33 16 42 H 0.10 1.57 7.85 -51.93 -0.41 1.17 16 43 H 0.34 7.40 8.17 -39.29 -0.32 7.08 16 44 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 45 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 46 H 0.03 0.46 7.45 -51.93 -0.39 0.07 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -36.49 366.17 -8.16 -44.65 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.82 Total: 4.66 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.29 Total: 4.14 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.36 Total: -50.48 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.06 Total: -26.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.49 -8.16 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.452 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds