Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47068 * 2 1 4 4 C 1.34232 * 117.00001 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99790 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00146 * 180.02562 * 4 3 2 7 7 H 1.08999 * 109.69697 * 358.30211 * 6 4 3 8 8 C 1.52762 * 109.50776 * 238.18979 * 6 4 3 9 9 C 1.53037 * 109.38298 * 185.70505 * 8 6 4 10 10 C 1.53040 * 109.53983 * 61.23752 * 9 8 6 11 11 C 1.53187 * 109.31187 * 298.63631 * 10 9 8 12 12 N 1.46919 * 109.58914 * 118.65834 * 6 4 3 13 13 C 1.34770 * 120.63216 * 353.42173 * 12 6 4 14 14 O 1.21281 * 120.00296 * 353.62282 * 13 12 6 15 15 C 1.50708 * 120.00081 * 173.62215 * 13 12 6 16 16 N 1.46905 * 109.46916 * 179.97438 * 15 13 12 17 17 C 1.46899 * 110.99615 * 179.97438 * 16 15 13 18 18 H 1.09001 * 109.47483 * 324.99676 * 17 16 15 19 19 C 1.52996 * 109.47022 * 85.00204 * 17 16 15 20 20 C 1.50708 * 109.46710 * 204.99916 * 17 16 15 21 21 H 1.07995 * 119.99944 * 359.97438 * 20 17 16 22 22 C 1.37881 * 119.99304 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99468 * 180.02562 * 22 20 17 24 24 Si 1.86797 * 120.00554 * 0.02562 * 22 20 17 25 25 H 1.48493 * 109.47152 * 89.99797 * 24 22 20 26 26 H 1.48494 * 109.47053 * 210.00120 * 24 22 20 27 27 H 1.48500 * 109.46866 * 329.99870 * 24 22 20 28 28 H 1.09000 * 109.46848 * 59.99650 * 1 2 3 29 29 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46709 * 299.99984 * 1 2 3 31 31 H 1.09004 * 109.46963 * 240.00415 * 2 1 3 32 32 H 1.08994 * 109.47294 * 120.00303 * 2 1 3 33 33 H 1.09003 * 109.56398 * 65.66574 * 8 6 4 34 34 H 1.09005 * 109.38468 * 305.62932 * 8 6 4 35 35 H 1.09002 * 109.45711 * 301.21213 * 9 8 6 36 36 H 1.09003 * 109.45955 * 181.26296 * 9 8 6 37 37 H 1.08994 * 109.49485 * 178.68289 * 10 9 8 38 38 H 1.09005 * 109.49647 * 58.58555 * 10 9 8 39 39 H 1.09007 * 109.58692 * 294.84726 * 11 10 9 40 40 H 1.08999 * 109.58651 * 174.42185 * 11 10 9 41 41 H 1.08998 * 109.47006 * 60.00240 * 15 13 12 42 42 H 1.09000 * 109.46964 * 299.99753 * 15 13 12 43 43 H 1.00902 * 110.99974 * 303.95207 * 16 15 13 44 44 H 1.08998 * 109.47065 * 179.97438 * 19 17 16 45 45 H 1.08997 * 109.47634 * 59.99892 * 19 17 16 46 46 H 1.08997 * 109.47353 * 299.99922 * 19 17 16 47 47 H 0.97002 * 119.99955 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1133 3.6690 -0.0296 8 6 4.8165 3.1194 -1.2240 9 6 5.5112 4.4809 -1.1470 10 6 6.3864 4.5388 0.1071 11 6 5.5040 4.3754 1.3486 12 7 4.7231 3.1381 1.2143 13 6 4.7468 2.2025 2.1841 14 8 4.0149 1.2380 2.1143 15 6 5.6830 2.3548 3.3553 16 7 5.5182 1.2135 4.2655 17 6 6.4175 1.3280 5.4213 18 1 7.3554 1.7866 5.1081 19 6 5.7592 2.1957 6.4958 20 6 6.6918 -0.0438 5.9820 21 1 6.2427 -0.9134 5.5255 22 6 7.5155 -0.1883 7.0783 23 7 7.7553 -1.3854 7.5672 24 14 8.2906 1.3161 7.8690 25 1 7.3891 1.8394 8.9266 26 1 9.5953 0.9418 8.4713 27 1 8.5037 2.3630 6.8376 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.2117 3.0701 -2.1295 34 1 5.5667 2.3288 -1.2440 35 1 4.7602 5.2697 -1.1027 36 1 6.1334 4.6215 -2.0309 37 1 6.8988 5.4999 0.1489 38 1 7.1217 3.7349 0.0751 39 1 4.8282 5.2268 1.4313 40 1 6.1316 4.3168 2.2378 41 1 5.4533 3.2786 3.8863 42 1 6.7116 2.3881 2.9963 43 1 4.5578 1.1230 4.5616 44 1 6.4263 2.2802 7.3536 45 1 4.8214 1.7370 6.8091 46 1 5.5607 3.1878 6.0903 47 1 8.3345 -1.4871 8.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -131.928828 kcal Electronic energy + Delta-G solvation = -27538.742865 eV Core-core repulsion = 23721.134981 eV Total energy + Delta-G solvation = -3817.607884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26821 -40.49853 -38.71496 -37.70199 -37.40845 -34.58023 -34.00206 -33.14387 -32.25848 -31.54728 -27.88383 -27.14349 -26.27172 -25.24955 -23.82674 -22.44488 -22.01390 -21.87241 -20.09657 -19.10939 -18.72697 -18.13977 -17.67109 -17.13226 -17.02508 -16.60906 -16.50713 -15.94544 -15.36906 -15.29791 -15.07139 -14.86046 -14.74667 -14.56709 -14.31494 -14.03562 -13.94460 -13.81711 -13.55717 -13.47166 -13.14349 -12.92309 -12.73251 -12.62858 -12.51435 -12.45970 -12.14118 -11.99791 -11.77212 -11.65164 -11.50278 -11.46747 -11.28333 -11.23184 -10.76809 -10.68521 -9.79491 -9.07703 -8.26698 -6.31365 1.09756 1.31184 1.37439 1.48671 1.49035 1.69715 1.96038 2.33571 3.06734 3.36539 3.50193 3.72097 3.75629 3.81504 3.96663 4.00970 4.07168 4.10242 4.19662 4.28743 4.30569 4.33131 4.45844 4.52229 4.55654 4.65200 4.67960 4.77672 4.80286 4.85228 4.89537 4.92413 5.02095 5.10564 5.12772 5.21694 5.37241 5.39074 5.45576 5.57278 5.63636 5.92258 6.17341 6.57773 6.66099 6.75772 6.83487 7.10588 7.33385 8.91707 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.003861 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.171739 B = 7249.427770 C = 8646.840024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 O -0.363 6.363 4 C 0.469 3.531 5 O -0.535 6.535 6 C 0.157 3.843 7 H 0.130 0.870 8 C -0.122 4.122 9 C -0.108 4.108 10 C -0.138 4.138 11 C 0.100 3.900 12 N -0.605 5.605 13 C 0.504 3.496 14 O -0.546 6.546 15 C 0.053 3.947 16 N -0.683 5.683 17 C 0.192 3.808 18 H 0.042 0.958 19 C -0.177 4.177 20 C -0.512 4.512 21 H 0.021 0.979 22 C 0.003 3.997 23 N -0.956 5.956 24 Si 0.963 3.037 25 H -0.264 1.264 26 H -0.299 1.299 27 H -0.237 1.237 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.336 0.664 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 21.414 -19.682 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.313 3.687 5 O -0.424 6.424 6 C 0.053 3.947 7 H 0.147 0.853 8 C -0.160 4.160 9 C -0.146 4.146 10 C -0.176 4.176 11 C -0.020 4.020 12 N -0.343 5.343 13 C 0.294 3.706 14 O -0.424 6.424 15 C -0.079 4.079 16 N -0.315 5.315 17 C 0.083 3.917 18 H 0.060 0.940 19 C -0.235 4.235 20 C -0.551 4.551 21 H 0.039 0.961 22 C -0.193 4.193 23 N -0.597 5.597 24 Si 0.789 3.211 25 H -0.190 1.190 26 H -0.227 1.227 27 H -0.161 1.161 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.154 0.846 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.174 20.079 -19.960 29.762 hybrid contribution 0.102 -0.344 1.294 1.343 sum -9.072 19.736 -18.666 28.640 Atomic orbital electron populations 1.21785 0.89776 1.04255 1.03809 1.23068 0.97206 0.79669 1.01210 1.86379 1.24254 1.33093 1.84302 1.23568 0.80935 0.92906 0.71291 1.90669 1.61036 1.44426 1.46251 1.20864 0.95339 0.90690 0.87806 0.85258 1.21873 0.98666 1.00468 0.95033 1.21513 0.99595 0.94699 0.98754 1.22001 0.97902 1.03871 0.93870 1.22243 0.94833 0.84389 1.00509 1.48237 1.48455 1.20982 1.16625 1.21222 0.83403 0.81400 0.84616 1.90688 1.42804 1.32020 1.76852 1.21869 0.99314 0.94775 0.91975 1.60112 1.10635 1.41709 1.18997 1.19447 0.92130 0.93709 0.86462 0.94018 1.22718 1.00913 0.99870 1.00044 1.21280 1.28257 0.93027 1.12504 0.96084 1.25977 0.96672 0.99443 0.97230 1.70089 1.39267 1.24932 1.25364 0.85655 0.76662 0.79385 0.79414 1.19046 1.22731 1.16087 0.90036 0.88559 0.91831 0.91577 0.94139 0.88384 0.93133 0.88797 0.89439 0.87157 0.93056 0.87587 0.88399 0.89540 0.87739 0.84550 0.94016 0.93292 0.91043 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.06 1.73 6.19 71.98 0.45 2.18 16 3 O -0.36 -10.87 10.22 -49.53 -0.51 -11.37 16 4 C 0.47 15.15 4.50 71.24 0.32 15.47 16 5 O -0.54 -22.40 14.34 29.76 0.43 -21.97 16 6 C 0.16 3.43 3.33 44.09 0.15 3.58 16 7 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.12 -2.00 5.30 30.53 0.16 -1.84 16 9 C -0.11 -0.95 5.89 30.62 0.18 -0.77 16 10 C -0.14 -1.40 6.08 30.67 0.19 -1.22 16 11 C 0.10 1.29 6.35 86.36 0.55 1.84 16 12 N -0.61 -14.07 2.98 -799.99 -2.38 -16.45 16 13 C 0.50 16.97 7.42 87.66 0.65 17.62 16 14 O -0.55 -23.85 11.98 22.47 0.27 -23.58 16 15 C 0.05 1.69 4.32 85.56 0.37 2.06 16 16 N -0.68 -30.14 5.85 -499.44 -2.92 -33.06 16 17 C 0.19 8.99 2.17 44.17 0.10 9.09 16 18 H 0.04 1.90 6.86 -2.39 -0.02 1.89 16 19 C -0.18 -7.02 8.64 71.98 0.62 -6.40 16 20 C -0.51 -30.98 9.42 25.60 0.24 -30.74 16 21 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 22 C 0.00 0.17 5.45 84.65 0.46 0.63 16 23 N -0.96 -62.28 13.96 21.45 0.30 -61.98 16 24 Si 0.96 44.54 24.37 68.60 1.67 46.21 16 25 H -0.26 -11.51 6.87 99.48 0.68 -10.82 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.24 -9.68 6.53 99.48 0.65 -9.03 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.75 8.13 -2.38 -0.02 1.73 16 32 H 0.04 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.16 7.92 -2.38 -0.02 1.14 16 35 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.10 1.20 5.93 -2.39 -0.01 1.19 16 41 H 0.09 2.13 6.99 -2.39 -0.02 2.12 16 42 H 0.10 3.19 7.85 -2.39 -0.02 3.17 16 43 H 0.34 15.08 8.17 -89.69 -0.73 14.34 16 44 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 45 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 46 H 0.07 2.19 7.45 -2.39 -0.02 2.17 16 47 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -88.27 366.17 2.17 -86.09 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.15 Total: 26.43 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 5.17 Total: 9.69 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -5.01 Total: -111.50 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: 0.19 Total: -56.92 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.21 kcal Total: -88.27 2.17 -86.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.834 kcal (2) G-P(sol) polarization free energy of solvation -88.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds