Wall clock time and date at job start Fri Apr 10 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47214 * 2 1 4 4 C 1.34231 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99748 * 359.72946 * 4 3 2 6 6 C 1.50700 * 120.00020 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58427 * 1.47303 * 6 4 3 8 8 C 1.53189 * 109.58233 * 121.89577 * 6 4 3 9 9 C 1.53048 * 109.30931 * 174.42387 * 8 6 4 10 10 C 1.53045 * 109.53545 * 298.63364 * 9 8 6 11 11 C 1.53194 * 109.31122 * 61.36778 * 10 9 8 12 12 N 1.46924 * 108.77652 * 305.36200 * 11 10 9 13 13 C 1.34775 * 120.63126 * 233.58953 * 12 11 10 14 14 O 1.21285 * 120.00128 * 186.11057 * 13 12 11 15 15 C 1.50695 * 120.00081 * 6.11132 * 13 12 11 16 16 N 1.46898 * 109.47530 * 180.02562 * 15 13 12 17 17 C 1.46896 * 111.00569 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47071 * 34.99952 * 17 16 15 19 19 C 1.53000 * 109.47241 * 275.00100 * 17 16 15 20 20 C 1.50703 * 109.47388 * 154.99703 * 17 16 15 21 21 H 1.07997 * 119.99878 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99767 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00591 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99571 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47286 * 60.00416 * 24 22 20 26 26 H 1.48501 * 109.47039 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47412 * 299.99856 * 24 22 20 28 28 H 1.09003 * 109.47226 * 59.99635 * 1 2 3 29 29 H 1.08996 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46847 * 299.99512 * 1 2 3 31 31 H 1.09005 * 109.46847 * 240.00488 * 2 1 3 32 32 H 1.09003 * 109.47226 * 120.00365 * 2 1 3 33 33 H 1.08998 * 109.50060 * 294.37038 * 8 6 4 34 34 H 1.09004 * 109.49965 * 54.47572 * 8 6 4 35 35 H 1.08997 * 109.45992 * 178.61481 * 9 8 6 36 36 H 1.08994 * 109.46155 * 58.65508 * 9 8 6 37 37 H 1.08991 * 109.49638 * 301.41337 * 10 9 8 38 38 H 1.09005 * 109.49452 * 181.31700 * 10 9 8 39 39 H 1.09005 * 109.58271 * 185.57692 * 11 10 9 40 40 H 1.08998 * 109.58768 * 65.14768 * 11 10 9 41 41 H 1.08998 * 109.47005 * 300.00254 * 15 13 12 42 42 H 1.09005 * 109.47404 * 59.99951 * 15 13 12 43 43 H 1.00910 * 110.99693 * 303.95200 * 16 15 13 44 44 H 1.08997 * 109.46616 * 299.99757 * 19 17 16 45 45 H 1.08997 * 109.47168 * 59.99558 * 19 17 16 46 46 H 1.08997 * 109.46871 * 179.97438 * 19 17 16 47 47 H 0.96996 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 0.0040 6 6 3.9208 2.9374 0.0000 7 1 3.1118 3.6674 0.0272 8 6 4.8223 3.1196 1.2251 9 6 5.5124 4.4834 1.1471 10 6 6.3854 4.5442 -0.1084 11 6 5.5015 4.3781 -1.3486 12 7 4.7249 3.1383 -1.2131 13 6 4.7494 2.2032 -2.1834 14 8 4.0204 1.2365 -2.1125 15 6 5.6826 2.3587 -3.3564 16 7 5.5193 1.2175 -4.2668 17 6 6.4150 1.3356 -5.4251 18 1 7.3522 1.7974 -5.1141 19 6 5.7508 2.2017 -6.4972 20 6 6.6927 -0.0348 -5.9872 21 1 6.2479 -0.9063 -5.5301 22 6 7.5146 -0.1759 -7.0852 23 7 8.0567 0.8852 -7.6417 24 14 7.8593 -1.8747 -7.7816 25 1 6.5829 -2.5042 -8.2056 26 1 8.7657 -1.7554 -8.9518 27 1 8.5038 -2.7150 -6.7406 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 4.2191 3.0685 2.1315 34 1 5.5751 2.3315 1.2433 35 1 6.1356 4.6260 2.0299 36 1 4.7589 5.2698 1.1039 37 1 7.1234 3.7427 -0.0776 38 1 6.8948 5.5070 -0.1511 39 1 6.1280 4.3214 -2.2388 40 1 4.8230 5.2272 -1.4301 41 1 5.4492 3.2821 -3.8864 42 1 6.7119 2.3949 -2.9995 43 1 5.6671 0.3446 -3.7825 44 1 4.8138 1.7399 -6.8082 45 1 5.5500 3.1929 -6.0906 46 1 6.4157 2.2897 -7.3565 47 1 8.6352 0.7858 -8.4139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:55 Heat of formation + Delta-G solvation = -116.408870 kcal Electronic energy + Delta-G solvation = -27467.984441 eV Core-core repulsion = 23651.049553 eV Total energy + Delta-G solvation = -3816.934888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08802 -39.25549 -37.53501 -36.26770 -35.53025 -33.11804 -32.54054 -32.06195 -31.28954 -29.11124 -26.59039 -25.44059 -24.62879 -24.40380 -22.87027 -21.14614 -21.07086 -19.74955 -18.94758 -17.86413 -17.06155 -16.52245 -16.42899 -15.82053 -15.57656 -15.38478 -14.84158 -14.58079 -14.30520 -13.98728 -13.88119 -13.59048 -13.43805 -13.22267 -13.00335 -12.80245 -12.63641 -12.46126 -11.90567 -11.83192 -11.65179 -11.49593 -11.41389 -11.25123 -11.14214 -10.94991 -10.89142 -10.74932 -10.37128 -10.34849 -10.13895 -10.05900 -10.03045 -9.33790 -8.84138 -8.73933 -8.46125 -7.29533 -6.02301 -4.07937 2.23840 2.71143 2.88793 3.11298 3.34221 3.37393 3.42020 4.36701 4.42837 4.49722 4.56720 4.70968 4.82958 4.89653 4.95486 4.96322 5.05607 5.18106 5.26615 5.30740 5.32923 5.40770 5.45352 5.50664 5.63293 5.65262 5.73038 5.77279 5.81156 5.81921 5.88728 5.92241 6.03568 6.31849 6.70202 6.82501 7.10102 7.16801 7.29207 7.47305 7.79731 7.87328 8.04163 8.25761 8.36735 8.37206 8.65573 9.01710 9.57898 11.04265 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003733 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.223439 B = 7498.724563 C = 8897.945424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.362 6.362 4 C 0.479 3.521 5 O -0.492 6.492 6 C 0.158 3.842 7 H 0.097 0.903 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.140 4.140 11 C 0.111 3.889 12 N -0.615 5.615 13 C 0.513 3.487 14 O -0.497 6.497 15 C 0.052 3.948 16 N -0.673 5.673 17 C 0.213 3.787 18 H 0.002 0.998 19 C -0.125 4.125 20 C -0.517 4.517 21 H 0.061 0.939 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.342 0.658 44 H 0.033 0.967 45 H 0.003 0.997 46 H 0.082 0.918 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 9.999 19.073 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 O -0.279 6.279 4 C 0.321 3.679 5 O -0.378 6.378 6 C 0.053 3.947 7 H 0.115 0.885 8 C -0.163 4.163 9 C -0.153 4.153 10 C -0.178 4.178 11 C -0.011 4.011 12 N -0.354 5.354 13 C 0.302 3.698 14 O -0.370 6.370 15 C -0.081 4.081 16 N -0.306 5.306 17 C 0.106 3.894 18 H 0.020 0.980 19 C -0.183 4.183 20 C -0.556 4.556 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.161 0.839 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.101 0.899 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.898 9.435 18.587 22.665 hybrid contribution 1.124 -1.113 -0.060 1.583 sum -7.774 8.322 18.527 21.747 Atomic orbital electron populations 1.21791 0.93056 1.02728 1.03151 1.22917 0.94695 0.80251 1.02681 1.86373 1.24437 1.32472 1.84629 1.22602 0.81013 0.91565 0.72673 1.90664 1.60105 1.42493 1.44568 1.20592 0.94138 0.92696 0.87271 0.88483 1.21898 0.99359 0.99445 0.95580 1.21490 0.99169 0.96202 0.98402 1.21980 0.98391 1.03054 0.94383 1.21810 0.94298 0.85562 0.99471 1.48196 1.48826 1.20810 1.17603 1.21278 0.83882 0.81358 0.83267 1.90674 1.40749 1.30223 1.75340 1.21777 0.95461 0.99236 0.91594 1.60526 1.58708 1.02528 1.08834 1.19150 0.88163 0.96147 0.85956 0.98047 1.21731 1.00296 0.95002 1.01270 1.21215 1.28413 0.92230 1.13738 0.92128 1.24894 0.95544 0.96966 0.96490 1.69878 1.32117 1.28390 1.22674 0.86556 0.78193 0.84259 0.78388 1.20138 1.21292 1.20298 0.91477 0.90431 0.91914 0.90645 0.91884 0.90264 0.90050 0.90943 0.91323 0.90978 0.90165 0.88636 0.90869 0.88863 0.93202 0.83936 0.94801 0.97834 0.89940 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.07 0.91 6.19 37.16 0.23 1.14 16 3 O -0.36 -5.46 10.22 -41.18 -0.42 -5.88 16 4 C 0.48 7.71 4.50 36.01 0.16 7.87 16 5 O -0.49 -9.59 14.36 -26.91 -0.39 -9.98 16 6 C 0.16 1.94 3.34 -68.75 -0.23 1.71 16 7 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.12 -1.18 5.31 -26.61 -0.14 -1.32 16 9 C -0.12 -0.80 5.88 -26.68 -0.16 -0.96 16 10 C -0.14 -1.07 6.08 -26.61 -0.16 -1.23 16 11 C 0.11 1.05 6.35 -3.71 -0.02 1.02 16 12 N -0.61 -8.25 2.97 -166.54 -0.49 -8.75 16 13 C 0.51 9.18 7.43 -10.99 -0.08 9.10 16 14 O -0.50 -10.70 11.98 -21.04 -0.25 -10.95 16 15 C 0.05 0.96 4.32 -4.98 -0.02 0.94 16 16 N -0.67 -15.52 5.93 -109.22 -0.65 -16.17 16 17 C 0.21 5.49 2.60 -68.87 -0.18 5.31 16 18 H 0.00 0.05 7.80 -51.93 -0.41 -0.35 16 19 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 20 C -0.52 -14.63 8.59 -34.44 -0.30 -14.92 16 21 H 0.06 1.73 7.62 -52.49 -0.40 1.33 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 24 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.95 7.93 -51.93 -0.41 0.53 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.91 5.93 -51.93 -0.31 0.61 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.58 6.98 -51.93 -0.36 1.22 16 42 H 0.05 0.87 7.85 -51.93 -0.41 0.47 16 43 H 0.34 8.29 7.93 -39.29 -0.31 7.98 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.00 0.06 7.45 -51.93 -0.39 -0.33 16 46 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -34.20 372.72 -9.19 -43.38 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.94 Total: 4.41 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.27 Total: 6.48 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.51 Total: -49.81 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.06 Total: -26.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.20 -9.19 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.026 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds