Wall clock time and date at job start Fri Apr 10 2020 18:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47214 * 2 1 4 4 C 1.34231 * 117.00089 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99748 * 359.72946 * 4 3 2 6 6 C 1.50700 * 120.00020 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.58427 * 1.47303 * 6 4 3 8 8 C 1.53189 * 109.58233 * 121.89577 * 6 4 3 9 9 C 1.53048 * 109.30931 * 174.42387 * 8 6 4 10 10 C 1.53045 * 109.53545 * 298.63364 * 9 8 6 11 11 C 1.53194 * 109.31122 * 61.36778 * 10 9 8 12 12 N 1.46924 * 108.77652 * 305.36200 * 11 10 9 13 13 C 1.34775 * 120.63126 * 233.58953 * 12 11 10 14 14 O 1.21285 * 120.00128 * 186.11057 * 13 12 11 15 15 C 1.50695 * 120.00081 * 6.11132 * 13 12 11 16 16 N 1.46898 * 109.47530 * 180.02562 * 15 13 12 17 17 C 1.46896 * 111.00569 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.47071 * 34.99952 * 17 16 15 19 19 C 1.53000 * 109.47241 * 275.00100 * 17 16 15 20 20 C 1.50703 * 109.47388 * 154.99703 * 17 16 15 21 21 H 1.07997 * 119.99878 * 0.02562 * 20 17 16 22 22 C 1.37874 * 119.99767 * 180.02562 * 20 17 16 23 23 N 1.31512 * 120.00591 * 0.02562 * 22 20 17 24 24 Si 1.86802 * 119.99571 * 179.97438 * 22 20 17 25 25 H 1.48502 * 109.47286 * 60.00416 * 24 22 20 26 26 H 1.48501 * 109.47039 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47412 * 299.99856 * 24 22 20 28 28 H 1.09003 * 109.47226 * 59.99635 * 1 2 3 29 29 H 1.08996 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46847 * 299.99512 * 1 2 3 31 31 H 1.09005 * 109.46847 * 240.00488 * 2 1 3 32 32 H 1.09003 * 109.47226 * 120.00365 * 2 1 3 33 33 H 1.08998 * 109.50060 * 294.37038 * 8 6 4 34 34 H 1.09004 * 109.49965 * 54.47572 * 8 6 4 35 35 H 1.08997 * 109.45992 * 178.61481 * 9 8 6 36 36 H 1.08994 * 109.46155 * 58.65508 * 9 8 6 37 37 H 1.08991 * 109.49638 * 301.41337 * 10 9 8 38 38 H 1.09005 * 109.49452 * 181.31700 * 10 9 8 39 39 H 1.09005 * 109.58271 * 185.57692 * 11 10 9 40 40 H 1.08998 * 109.58768 * 65.14768 * 11 10 9 41 41 H 1.08998 * 109.47005 * 300.00254 * 15 13 12 42 42 H 1.09005 * 109.47404 * 59.99951 * 15 13 12 43 43 H 1.00910 * 110.99693 * 303.95200 * 16 15 13 44 44 H 1.08997 * 109.46616 * 299.99757 * 19 17 16 45 45 H 1.08997 * 109.47168 * 59.99558 * 19 17 16 46 46 H 1.08997 * 109.46871 * 179.97438 * 19 17 16 47 47 H 0.96996 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 0.0040 6 6 3.9208 2.9374 0.0000 7 1 3.1118 3.6674 0.0272 8 6 4.8223 3.1196 1.2251 9 6 5.5124 4.4834 1.1471 10 6 6.3854 4.5442 -0.1084 11 6 5.5015 4.3781 -1.3486 12 7 4.7249 3.1383 -1.2131 13 6 4.7494 2.2032 -2.1834 14 8 4.0204 1.2365 -2.1125 15 6 5.6826 2.3587 -3.3564 16 7 5.5193 1.2175 -4.2668 17 6 6.4150 1.3356 -5.4251 18 1 7.3522 1.7974 -5.1141 19 6 5.7508 2.2017 -6.4972 20 6 6.6927 -0.0348 -5.9872 21 1 6.2479 -0.9063 -5.5301 22 6 7.5146 -0.1759 -7.0852 23 7 8.0567 0.8852 -7.6417 24 14 7.8593 -1.8747 -7.7816 25 1 6.5829 -2.5042 -8.2056 26 1 8.7657 -1.7554 -8.9518 27 1 8.5038 -2.7150 -6.7406 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 4.2191 3.0685 2.1315 34 1 5.5751 2.3315 1.2433 35 1 6.1356 4.6260 2.0299 36 1 4.7589 5.2698 1.1039 37 1 7.1234 3.7427 -0.0776 38 1 6.8948 5.5070 -0.1511 39 1 6.1280 4.3214 -2.2388 40 1 4.8230 5.2272 -1.4301 41 1 5.4492 3.2821 -3.8864 42 1 6.7119 2.3949 -2.9995 43 1 5.6671 0.3446 -3.7825 44 1 4.8138 1.7399 -6.8082 45 1 5.5500 3.1929 -6.0906 46 1 6.4157 2.2897 -7.3565 47 1 8.6352 0.7858 -8.4139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:54 Heat of formation + Delta-G solvation = -138.605328 kcal Electronic energy + Delta-G solvation = -27468.946952 eV Core-core repulsion = 23651.049553 eV Total energy + Delta-G solvation = -3817.897399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26475 -40.49099 -38.66287 -37.56944 -37.31869 -34.59202 -33.96743 -33.10726 -32.20220 -30.92886 -27.92759 -27.27352 -26.19642 -25.25570 -23.82705 -22.43281 -21.96473 -21.60152 -20.08126 -19.12439 -18.60264 -18.04490 -17.65190 -17.21078 -16.80207 -16.63635 -16.59013 -15.70342 -15.45336 -15.27318 -14.99914 -14.80802 -14.66120 -14.52788 -14.30625 -14.00106 -13.84079 -13.55484 -13.42605 -13.14736 -12.89084 -12.75048 -12.71460 -12.63389 -12.46244 -12.34447 -12.22287 -12.16873 -12.01996 -11.78481 -11.66017 -11.49239 -11.23848 -10.98173 -10.72166 -10.57340 -9.79828 -9.14717 -8.17082 -6.30332 1.08848 1.39749 1.41515 1.47607 1.49512 1.69781 1.94734 2.39714 3.11281 3.39711 3.58878 3.72262 3.75565 3.80647 3.97621 4.00440 4.05234 4.10647 4.18671 4.31734 4.33606 4.34987 4.46835 4.65561 4.76956 4.79590 4.80422 4.84744 4.90317 5.00265 5.04839 5.10859 5.11250 5.15448 5.20485 5.36561 5.43570 5.43927 5.56875 5.61783 5.80158 6.11888 6.19389 6.36811 6.65960 6.81910 6.87657 7.09036 7.39318 8.88390 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003733 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.223439 B = 7498.724563 C = 8897.945424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.472 3.528 5 O -0.535 6.535 6 C 0.155 3.845 7 H 0.128 0.872 8 C -0.119 4.119 9 C -0.108 4.108 10 C -0.137 4.137 11 C 0.100 3.900 12 N -0.605 5.605 13 C 0.508 3.492 14 O -0.543 6.543 15 C 0.055 3.945 16 N -0.680 5.680 17 C 0.218 3.782 18 H -0.017 1.017 19 C -0.112 4.112 20 C -0.545 4.545 21 H 0.048 0.952 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.276 1.276 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.330 0.670 44 H 0.021 0.979 45 H 0.031 0.969 46 H 0.062 0.938 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 12.100 20.385 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.316 3.684 5 O -0.424 6.424 6 C 0.051 3.949 7 H 0.146 0.854 8 C -0.158 4.158 9 C -0.146 4.146 10 C -0.175 4.175 11 C -0.020 4.020 12 N -0.343 5.343 13 C 0.297 3.703 14 O -0.421 6.421 15 C -0.077 4.077 16 N -0.312 5.312 17 C 0.111 3.889 18 H 0.000 1.000 19 C -0.171 4.171 20 C -0.583 4.583 21 H 0.066 0.934 22 C -0.180 4.180 23 N -0.550 5.550 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.201 1.201 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.147 0.853 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.372 11.608 19.931 24.896 hybrid contribution 1.263 -1.720 -0.400 2.171 sum -8.109 9.889 19.531 23.345 Atomic orbital electron populations 1.21789 0.89890 1.04285 1.03740 1.23083 0.97161 0.79588 1.01305 1.86385 1.24224 1.33251 1.84232 1.23481 0.80950 0.92788 0.71170 1.90633 1.61002 1.44314 1.46490 1.20995 0.95303 0.90919 0.87721 0.85398 1.21936 0.98554 1.00369 0.94914 1.21518 0.99621 0.94835 0.98584 1.21991 0.97849 1.03820 0.93832 1.22213 0.94915 0.84426 1.00453 1.48225 1.48493 1.20882 1.16717 1.21125 0.83462 0.81702 0.84004 1.90665 1.42584 1.32253 1.76589 1.21806 0.96350 0.97930 0.91633 1.60428 1.57897 1.03522 1.09340 1.18974 0.87852 0.95049 0.87061 0.99974 1.21548 0.98926 0.96266 1.00339 1.21497 1.29178 0.93087 1.14548 0.93368 1.25623 0.95157 1.00578 0.96593 1.69971 1.32182 1.30016 1.22861 0.85597 0.78078 0.79938 0.77909 1.20035 1.20122 1.19945 0.92005 0.88426 0.90065 0.94019 0.91354 0.88204 0.92917 0.89225 0.88849 0.93060 0.87262 0.89017 0.87708 0.87074 0.92291 0.85277 0.95951 0.95024 0.91908 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.85 16 2 C 0.06 1.72 6.19 71.98 0.45 2.17 16 3 O -0.36 -11.07 10.22 -49.59 -0.51 -11.58 16 4 C 0.47 15.41 4.50 71.24 0.32 15.73 16 5 O -0.54 -21.94 14.36 29.75 0.43 -21.52 16 6 C 0.15 3.57 3.34 44.23 0.15 3.72 16 7 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 8 C -0.12 -2.02 5.31 30.67 0.16 -1.86 16 9 C -0.11 -1.08 5.88 30.63 0.18 -0.90 16 10 C -0.14 -1.67 6.08 30.67 0.19 -1.48 16 11 C 0.10 1.61 6.35 86.36 0.55 2.16 16 12 N -0.61 -15.51 2.97 -799.19 -2.38 -17.89 16 13 C 0.51 18.39 7.43 87.66 0.65 19.04 16 14 O -0.54 -24.41 11.98 22.38 0.27 -24.14 16 15 C 0.06 2.04 4.32 85.56 0.37 2.41 16 16 N -0.68 -32.30 5.93 -499.47 -2.96 -35.26 16 17 C 0.22 11.52 2.60 44.17 0.11 11.63 16 18 H -0.02 -0.96 7.80 -2.38 -0.02 -0.98 16 19 C -0.11 -5.66 9.19 71.98 0.66 -5.00 16 20 C -0.54 -31.58 8.59 25.60 0.22 -31.36 16 21 H 0.05 2.84 7.62 -2.91 -0.02 2.82 16 22 C 0.02 1.16 5.30 84.65 0.45 1.60 16 23 N -0.91 -52.49 11.32 21.45 0.24 -52.25 16 24 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 33 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.21 7.93 -2.39 -0.02 1.19 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.09 1.56 5.93 -2.38 -0.01 1.54 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 3.65 6.98 -2.39 -0.02 3.63 16 42 H 0.06 2.08 7.85 -2.38 -0.02 2.06 16 43 H 0.33 16.85 7.93 -89.69 -0.71 16.14 16 44 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.03 1.36 7.45 -2.39 -0.02 1.34 16 46 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 47 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -77.75 372.72 2.57 -75.18 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.25 Total: 24.44 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 5.20 Total: 16.01 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -5.09 Total: -105.39 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.19 Total: -57.24 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.75 2.57 -75.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.420 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds