Wall clock time and date at job start Fri Apr 10 2020 18:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45205 * 109.47086 * 2 1 4 4 C 1.34221 * 117.00188 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99949 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00395 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.52550 * 60.08154 * 6 4 3 8 8 C 1.53033 * 109.50179 * 180.16222 * 6 4 3 9 9 C 1.53041 * 109.53898 * 181.31603 * 8 6 4 10 10 C 1.53192 * 109.31320 * 298.63305 * 9 8 6 11 11 N 1.46927 * 108.77318 * 54.63839 * 10 9 8 12 12 C 1.34773 * 120.63516 * 126.41107 * 11 10 9 13 13 O 1.21277 * 120.00553 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99638 * 359.97438 * 12 11 10 15 15 N 1.46902 * 109.46957 * 179.97438 * 14 12 11 16 16 C 1.46905 * 110.99926 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.46936 * 35.00215 * 16 15 14 18 18 C 1.53006 * 109.47224 * 275.00378 * 16 15 14 19 19 C 1.50698 * 109.47118 * 155.00367 * 16 15 14 20 20 H 1.08003 * 119.99784 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00066 * 180.02562 * 19 16 15 22 22 N 1.31518 * 119.99885 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 120.00128 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47294 * 119.99484 * 23 21 19 26 26 H 1.48496 * 109.46850 * 239.99976 * 23 21 19 27 27 C 1.46926 * 118.73580 * 306.38910 * 11 10 9 28 28 H 1.08996 * 109.47467 * 60.00096 * 1 2 3 29 29 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47252 * 300.00327 * 1 2 3 31 31 H 1.08997 * 109.47548 * 240.00116 * 2 1 3 32 32 H 1.09006 * 109.47153 * 119.99422 * 2 1 3 33 33 H 1.09002 * 109.45686 * 61.29559 * 8 6 4 34 34 H 1.09004 * 109.45285 * 301.33296 * 8 6 4 35 35 H 1.09005 * 109.49689 * 178.68550 * 9 8 6 36 36 H 1.09002 * 109.50075 * 58.58639 * 9 8 6 37 37 H 1.08997 * 109.58972 * 294.84829 * 10 9 8 38 38 H 1.09001 * 109.70306 * 174.49208 * 10 9 8 39 39 H 1.08998 * 109.47194 * 299.99510 * 14 12 11 40 40 H 1.09009 * 109.47313 * 60.00139 * 14 12 11 41 41 H 1.00892 * 111.00563 * 303.95462 * 15 14 12 42 42 H 1.08999 * 109.46936 * 179.97438 * 18 16 15 43 43 H 1.08998 * 109.46787 * 300.00233 * 18 16 15 44 44 H 1.08992 * 109.47035 * 59.99970 * 18 16 15 45 45 H 0.96995 * 119.99862 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.58406 * 173.39827 * 27 11 10 47 47 H 1.09002 * 109.59019 * 293.81816 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5860 3.4705 0.8899 8 6 5.4489 2.8582 -0.0033 9 6 6.0349 4.2716 0.0292 10 6 5.5877 5.0344 -1.2217 11 7 4.1213 4.9908 -1.3031 12 6 3.4061 6.1268 -1.4235 13 8 2.1962 6.0775 -1.4902 14 6 4.1100 7.4583 -1.4752 15 7 3.1167 8.5324 -1.6080 16 6 3.7679 9.8482 -1.6611 17 1 4.7163 9.7629 -2.1914 18 6 4.0226 10.3490 -0.2379 19 6 2.8739 10.8224 -2.3840 20 1 1.9177 10.4966 -2.7662 21 6 3.2770 12.1293 -2.5584 22 7 4.4416 12.5259 -2.0934 23 14 2.1685 13.3371 -3.4539 24 1 0.9226 12.6472 -3.8747 25 1 1.8292 14.4633 -2.5475 26 1 2.8727 13.8607 -4.6519 27 6 3.4494 3.6852 -1.2513 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.7840 2.3468 -0.9057 34 1 5.7856 2.3052 0.8736 35 1 7.1232 4.2138 0.0504 36 1 5.6803 4.7921 0.9189 37 1 6.0169 4.5668 -2.1078 38 1 5.9195 6.0707 -1.1584 39 1 4.6816 7.6030 -0.5585 40 1 4.7845 7.4798 -2.3313 41 1 2.5312 8.3856 -2.4164 42 1 4.5062 11.3250 -0.2774 43 1 3.0741 10.4341 0.2924 44 1 4.6692 9.6444 0.2849 45 1 4.7250 13.4454 -2.2158 46 1 2.3702 3.8313 -1.2050 47 1 3.7042 3.1076 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602862238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:58 Heat of formation + Delta-G solvation = -127.417298 kcal Electronic energy + Delta-G solvation = -26379.914623 eV Core-core repulsion = 22562.502374 eV Total energy + Delta-G solvation = -3817.412249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08341 -39.87704 -37.64092 -36.73098 -35.57252 -33.28109 -32.47400 -32.24640 -31.41039 -29.15938 -26.37549 -25.55096 -25.16844 -23.88607 -23.29589 -21.95903 -20.48099 -19.82640 -19.04254 -17.95686 -17.29342 -16.97717 -16.56633 -16.24989 -15.65780 -15.48514 -14.89700 -14.72495 -14.36061 -14.11793 -13.99598 -13.75227 -13.58587 -13.25643 -13.06693 -12.88831 -12.76449 -12.47169 -12.26789 -11.96577 -11.82601 -11.78239 -11.34512 -11.28970 -11.18084 -10.94851 -10.93631 -10.85254 -10.72578 -10.70172 -10.36806 -10.15160 -10.06151 -9.43245 -8.84126 -8.72060 -8.48686 -7.30933 -6.04263 -4.09920 1.85502 2.30180 2.88391 2.96805 3.29520 3.37449 3.43121 4.22108 4.30885 4.40850 4.45943 4.58231 4.62499 4.67335 4.78802 4.83669 4.90493 4.92321 5.18066 5.26156 5.29898 5.34550 5.38807 5.43360 5.47608 5.55717 5.58398 5.64536 5.69486 5.77652 5.83861 5.86895 5.98137 6.13606 6.41585 6.81689 7.09092 7.16757 7.35206 7.43650 7.48078 7.78415 7.86083 8.24660 8.35182 8.39740 8.64322 9.00420 9.56159 11.02320 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002555 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.942605 B =10955.005631 C =11875.532285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.472 3.528 5 O -0.508 6.508 6 C -0.096 4.096 7 H 0.115 0.885 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.104 3.896 11 N -0.621 5.621 12 C 0.518 3.482 13 O -0.519 6.519 14 C 0.046 3.954 15 N -0.673 5.673 16 C 0.212 3.788 17 H 0.002 0.998 18 C -0.125 4.125 19 C -0.516 4.516 20 H 0.062 0.938 21 C 0.061 3.939 22 N -0.891 5.891 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.285 1.285 27 C 0.125 3.875 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.341 0.659 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.003 0.997 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -23.494 4.361 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.314 3.686 5 O -0.395 6.395 6 C -0.116 4.116 7 H 0.133 0.867 8 C -0.140 4.140 9 C -0.173 4.173 10 C -0.020 4.020 11 N -0.358 5.358 12 C 0.307 3.693 13 O -0.393 6.393 14 C -0.087 4.087 15 N -0.307 5.307 16 C 0.105 3.895 17 H 0.020 0.980 18 C -0.184 4.184 19 C -0.555 4.555 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 C 0.001 3.999 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.160 0.840 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.566 -23.594 4.993 24.167 hybrid contribution 0.029 0.391 -1.206 1.268 sum 1.595 -23.202 3.786 23.563 Atomic orbital electron populations 1.21818 0.92419 1.02970 1.03917 1.23055 0.95611 0.80054 1.02511 1.86562 1.24344 1.32488 1.83598 1.23575 0.80644 0.92303 0.72032 1.90660 1.60502 1.43012 1.45333 1.21523 0.97353 0.89891 1.02869 0.86732 1.21437 0.91195 0.97469 1.03931 1.21954 1.01322 0.95155 0.98881 1.21812 0.79684 1.02435 0.98023 1.48158 1.06964 1.05647 1.75010 1.21149 0.87834 0.85441 0.74923 1.90677 1.14009 1.86614 1.48015 1.21840 0.95480 0.89289 1.02051 1.60510 1.20589 1.01563 1.47996 1.19160 0.93108 0.83459 0.93763 0.98047 1.21734 0.98811 1.01166 0.96653 1.21293 1.03992 0.94771 1.35433 0.91977 1.24913 0.95225 0.98217 0.95676 1.69901 1.19817 1.17321 1.45963 0.86441 0.80748 0.80971 0.79276 1.19667 1.20954 1.21118 1.21335 1.00065 0.83673 0.94786 0.91207 0.90229 0.91313 0.91192 0.91262 0.90723 0.90625 0.89756 0.90826 0.91165 0.88774 0.88851 0.93327 0.84036 0.89953 0.94768 0.97811 0.92974 0.87585 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.15 0.38 -0.57 16 2 C 0.06 0.50 6.19 37.15 0.23 0.73 16 3 O -0.35 -3.74 10.15 -39.23 -0.40 -4.14 16 4 C 0.47 5.13 7.26 36.01 0.26 5.39 16 5 O -0.51 -6.44 15.73 -18.75 -0.29 -6.73 16 6 C -0.10 -0.93 2.78 -91.66 -0.25 -1.19 16 7 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 8 C -0.10 -0.86 4.46 -26.69 -0.12 -0.97 16 9 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 10 C 0.10 0.95 6.34 -3.71 -0.02 0.92 16 11 N -0.62 -7.63 2.97 -172.77 -0.51 -8.14 16 12 C 0.52 8.51 7.74 -10.99 -0.08 8.42 16 13 O -0.52 -10.46 15.62 5.56 0.09 -10.37 16 14 C 0.05 0.80 4.31 -4.97 -0.02 0.78 16 15 N -0.67 -14.89 5.93 -109.21 -0.65 -15.54 16 16 C 0.21 5.33 2.60 -68.86 -0.18 5.15 16 17 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 18 C -0.13 -3.08 9.19 37.16 0.34 -2.73 16 19 C -0.52 -14.24 8.59 -34.44 -0.30 -14.53 16 20 H 0.06 1.72 7.62 -52.48 -0.40 1.32 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 22 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 23 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.12 1.40 5.64 -3.71 -0.02 1.37 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.86 5.93 -51.93 -0.31 0.55 16 39 H 0.09 1.52 6.99 -51.93 -0.36 1.16 16 40 H 0.05 0.79 7.85 -51.92 -0.41 0.38 16 41 H 0.34 7.76 7.93 -39.30 -0.31 7.45 16 42 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.11 1.39 7.01 -51.93 -0.36 1.02 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -32.42 378.04 -8.39 -40.82 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.89 Total: 3.44 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.04 Total: 3.18 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.53 Total: -48.20 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.61 Total: -21.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -8.39 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.602 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds