Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45205 * 109.47086 * 2 1 4 4 C 1.34221 * 117.00188 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99949 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00395 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.52550 * 60.08154 * 6 4 3 8 8 C 1.53033 * 109.50179 * 180.16222 * 6 4 3 9 9 C 1.53041 * 109.53898 * 181.31603 * 8 6 4 10 10 C 1.53192 * 109.31320 * 298.63305 * 9 8 6 11 11 N 1.46927 * 108.77318 * 54.63839 * 10 9 8 12 12 C 1.34773 * 120.63516 * 126.41107 * 11 10 9 13 13 O 1.21277 * 120.00553 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99638 * 359.97438 * 12 11 10 15 15 N 1.46902 * 109.46957 * 179.97438 * 14 12 11 16 16 C 1.46905 * 110.99926 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.46936 * 35.00215 * 16 15 14 18 18 C 1.53006 * 109.47224 * 275.00378 * 16 15 14 19 19 C 1.50698 * 109.47118 * 155.00367 * 16 15 14 20 20 H 1.08003 * 119.99784 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00066 * 180.02562 * 19 16 15 22 22 N 1.31518 * 119.99885 * 359.97438 * 21 19 16 23 23 Si 1.86800 * 120.00128 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47294 * 119.99484 * 23 21 19 26 26 H 1.48496 * 109.46850 * 239.99976 * 23 21 19 27 27 C 1.46926 * 118.73580 * 306.38910 * 11 10 9 28 28 H 1.08996 * 109.47467 * 60.00096 * 1 2 3 29 29 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47252 * 300.00327 * 1 2 3 31 31 H 1.08997 * 109.47548 * 240.00116 * 2 1 3 32 32 H 1.09006 * 109.47153 * 119.99422 * 2 1 3 33 33 H 1.09002 * 109.45686 * 61.29559 * 8 6 4 34 34 H 1.09004 * 109.45285 * 301.33296 * 8 6 4 35 35 H 1.09005 * 109.49689 * 178.68550 * 9 8 6 36 36 H 1.09002 * 109.50075 * 58.58639 * 9 8 6 37 37 H 1.08997 * 109.58972 * 294.84829 * 10 9 8 38 38 H 1.09001 * 109.70306 * 174.49208 * 10 9 8 39 39 H 1.08998 * 109.47194 * 299.99510 * 14 12 11 40 40 H 1.09009 * 109.47313 * 60.00139 * 14 12 11 41 41 H 1.00892 * 111.00563 * 303.95462 * 15 14 12 42 42 H 1.08999 * 109.46936 * 179.97438 * 18 16 15 43 43 H 1.08998 * 109.46787 * 300.00233 * 18 16 15 44 44 H 1.08992 * 109.47035 * 59.99970 * 18 16 15 45 45 H 0.96995 * 119.99862 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.58406 * 173.39827 * 27 11 10 47 47 H 1.09002 * 109.59019 * 293.81816 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5860 3.4705 0.8899 8 6 5.4489 2.8582 -0.0033 9 6 6.0349 4.2716 0.0292 10 6 5.5877 5.0344 -1.2217 11 7 4.1213 4.9908 -1.3031 12 6 3.4061 6.1268 -1.4235 13 8 2.1962 6.0775 -1.4902 14 6 4.1100 7.4583 -1.4752 15 7 3.1167 8.5324 -1.6080 16 6 3.7679 9.8482 -1.6611 17 1 4.7163 9.7629 -2.1914 18 6 4.0226 10.3490 -0.2379 19 6 2.8739 10.8224 -2.3840 20 1 1.9177 10.4966 -2.7662 21 6 3.2770 12.1293 -2.5584 22 7 4.4416 12.5259 -2.0934 23 14 2.1685 13.3371 -3.4539 24 1 0.9226 12.6472 -3.8747 25 1 1.8292 14.4633 -2.5475 26 1 2.8727 13.8607 -4.6519 27 6 3.4494 3.6852 -1.2513 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.7840 2.3468 -0.9057 34 1 5.7856 2.3052 0.8736 35 1 7.1232 4.2138 0.0504 36 1 5.6803 4.7921 0.9189 37 1 6.0169 4.5668 -2.1078 38 1 5.9195 6.0707 -1.1584 39 1 4.6816 7.6030 -0.5585 40 1 4.7845 7.4798 -2.3313 41 1 2.5312 8.3856 -2.4164 42 1 4.5062 11.3250 -0.2774 43 1 3.0741 10.4341 0.2924 44 1 4.6692 9.6444 0.2849 45 1 4.7250 13.4454 -2.2158 46 1 2.3702 3.8313 -1.2050 47 1 3.7042 3.1076 -2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602862238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -148.046776 kcal Electronic energy + Delta-G solvation = -26380.809185 eV Core-core repulsion = 22562.502374 eV Total energy + Delta-G solvation = -3818.306811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 312.188 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.95985 -40.98661 -38.66142 -37.67822 -37.32046 -34.57872 -34.07403 -32.96217 -32.17008 -30.91473 -27.85935 -27.12233 -26.31355 -25.09447 -23.98463 -22.74758 -21.81012 -21.26095 -20.13290 -18.95366 -18.58618 -18.05248 -17.79527 -17.32734 -16.94411 -16.70454 -16.51218 -15.75021 -15.50196 -15.24039 -15.16493 -14.76927 -14.57962 -14.51428 -14.26379 -14.04085 -13.63405 -13.61023 -13.42164 -13.09912 -12.96378 -12.82550 -12.67991 -12.62238 -12.50894 -12.28283 -12.18598 -12.05016 -12.01218 -11.95859 -11.70775 -11.55918 -11.55127 -10.92956 -10.74235 -10.54947 -9.74690 -9.06572 -8.13385 -6.26090 0.98368 1.41658 1.44199 1.52326 1.56026 1.62315 1.94220 2.43142 3.15405 3.41222 3.49282 3.65817 3.67626 3.78950 3.98084 3.98476 4.03712 4.08012 4.13500 4.31690 4.40792 4.45157 4.49951 4.54326 4.68816 4.74229 4.82486 4.85487 4.86701 4.89247 5.03177 5.07732 5.10034 5.12647 5.21117 5.34021 5.39092 5.44726 5.51178 5.67350 5.85911 6.22626 6.28115 6.44501 6.60618 6.74140 6.94671 7.18099 7.43823 8.92325 Molecular weight = 312.19amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002555 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.942605 B =10955.005631 C =11875.532285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.475 3.525 5 O -0.526 6.526 6 C -0.090 4.090 7 H 0.115 0.885 8 C -0.098 4.098 9 C -0.127 4.127 10 C 0.094 3.906 11 N -0.610 5.610 12 C 0.520 3.480 13 O -0.566 6.566 14 C 0.048 3.952 15 N -0.683 5.683 16 C 0.218 3.782 17 H -0.016 1.016 18 C -0.115 4.115 19 C -0.540 4.540 20 H 0.052 0.948 21 C 0.017 3.983 22 N -0.913 5.913 23 Si 0.960 3.040 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.277 1.277 27 C 0.126 3.874 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.334 0.666 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.030 0.970 45 H 0.264 0.736 46 H 0.084 0.916 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -24.456 4.426 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.282 6.282 4 C 0.319 3.681 5 O -0.415 6.415 6 C -0.110 4.110 7 H 0.133 0.867 8 C -0.136 4.136 9 C -0.165 4.165 10 C -0.027 4.027 11 N -0.344 5.344 12 C 0.309 3.691 13 O -0.443 6.443 14 C -0.084 4.084 15 N -0.315 5.315 16 C 0.110 3.890 17 H 0.001 0.999 18 C -0.173 4.173 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.203 1.203 27 C 0.003 3.997 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.152 0.848 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.473 -24.594 5.069 25.233 hybrid contribution -0.210 0.580 -1.216 1.363 sum 2.264 -24.015 3.853 24.427 Atomic orbital electron populations 1.21843 0.90969 1.04377 1.03508 1.23308 0.96806 0.79002 1.02847 1.86570 1.24248 1.34039 1.83308 1.23716 0.80632 0.92408 0.71386 1.90648 1.60880 1.43645 1.46366 1.21501 0.98492 0.89053 1.01939 0.86683 1.21437 0.89772 0.98092 1.04276 1.21931 1.02787 0.94084 0.97675 1.22141 0.77353 1.03315 0.99897 1.48120 1.08341 1.04854 1.73085 1.20920 0.87214 0.86134 0.74865 1.90663 1.15809 1.87269 1.50595 1.21882 0.94733 0.88529 1.03306 1.60390 1.21737 1.01714 1.47647 1.18963 0.91921 0.84663 0.93425 0.99866 1.21566 0.98447 1.00723 0.96572 1.21583 1.04116 0.95899 1.36197 0.92969 1.25647 0.96529 0.99734 0.96335 1.69996 1.20923 1.17817 1.46505 0.85480 0.78967 0.78708 0.78302 1.19657 1.20489 1.20313 1.21344 0.98854 0.83247 0.96232 0.91719 0.87913 0.91564 0.90934 0.90856 0.90475 0.90193 0.87167 0.91178 0.89164 0.88484 0.87444 0.91764 0.84837 0.92086 0.95899 0.95102 0.92708 0.89774 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 71.98 0.74 -0.97 16 2 C 0.05 0.83 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.59 10.15 -51.33 -0.52 -8.11 16 4 C 0.48 9.92 7.26 71.24 0.52 10.44 16 5 O -0.53 -12.78 15.73 21.95 0.35 -12.43 16 6 C -0.09 -1.63 2.78 -11.46 -0.03 -1.66 16 7 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 8 C -0.10 -1.40 4.46 30.62 0.14 -1.26 16 9 C -0.13 -1.53 6.08 30.67 0.19 -1.35 16 10 C 0.09 1.47 6.34 86.36 0.55 2.02 16 11 N -0.61 -14.12 2.97 -818.90 -2.43 -16.56 16 12 C 0.52 16.82 7.74 87.66 0.68 17.50 16 13 O -0.57 -23.14 15.62 -3.02 -0.05 -23.19 16 14 C 0.05 1.61 4.31 85.56 0.37 1.98 16 15 N -0.68 -30.33 5.93 -499.44 -2.96 -33.29 16 16 C 0.22 11.01 2.60 44.17 0.11 11.13 16 17 H -0.02 -0.86 7.80 -2.39 -0.02 -0.88 16 18 C -0.11 -5.61 9.19 71.98 0.66 -4.95 16 19 C -0.54 -30.07 8.59 25.60 0.22 -29.85 16 20 H 0.05 2.94 7.62 -2.91 -0.02 2.92 16 21 C 0.02 0.94 5.30 84.65 0.45 1.39 16 22 N -0.91 -51.57 11.32 21.45 0.24 -51.33 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.13 2.71 5.64 86.36 0.49 3.20 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.07 1.07 8.13 -2.38 -0.02 1.05 16 33 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.08 1.12 8.07 -2.38 -0.02 1.10 16 35 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 1.50 5.93 -2.39 -0.01 1.48 16 39 H 0.11 3.30 6.99 -2.39 -0.02 3.28 16 40 H 0.06 2.00 7.85 -2.38 -0.02 1.98 16 41 H 0.33 15.51 7.93 -89.70 -0.71 14.79 16 42 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 43 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 45 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 46 H 0.08 2.23 7.01 -2.38 -0.02 2.21 16 47 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -69.87 378.04 2.42 -67.45 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.25 Total: 22.77 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.52 Total: 8.89 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -5.15 Total: -101.17 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.22 Total: -43.73 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.87 2.42 -67.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602862238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.597 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds